mRNA_M-pyrifera_M_contig125935.5240.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125935.5240.1
Unique NamemRNA_M-pyrifera_M_contig125935.5240.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125935.5240.1 vs. uniprot
Match: A0A7S4I690_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I690_9EUKA)

HSP 1 Score: 179 bits (454), Expect = 8.480e-51
Identity = 91/159 (57.23%), Postives = 120/159 (75.47%), Query Frame = 1
Query:    1 KLPYADIAKAVKTLDESVLTTENVSAMKQFVPTSEEIEILKEYTGDKAQLGKAERYFLEIMAVPKLASRLSALHTKLSFQGKYEGAKESLDVLVGAVKQIRESKMLPKMMELVRAIGNYLNGGTFRGGAYGFKLDTLVKMGGVKGVDPKLTMMHYLAQM 477
            K+ +ADI KA+  L+E VL  EN +A+KQ  P  EEIE +KEYTG+   LGKAER+F+E++ +  L  RL+ALHTK  F  K E A+ ++ V++ AVK+IR+SK LP+M+ELV A+GNYLNGGTFRGGAYGFKL+TLVK+  V+  D K  M++YLAQM
Sbjct:  160 KMSFADIRKAIMDLNEDVLPIENTAALKQLTPEPEEIEQIKEYTGEVELLGKAERFFIEMIKIKALRPRLNALHTKQGFDNKMEVARSAVLVMLDAVKEIRDSKKLPRMLELVLAVGNYLNGGTFRGGAYGFKLETLVKITEVRASDNKTNMLNYLAQM 318          
BLAST of mRNA_M-pyrifera_M_contig125935.5240.1 vs. uniprot
Match: UPI000B8D085F (formin-like protein 20 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D085F)

HSP 1 Score: 138 bits (347), Expect = 3.810e-37
Identity = 68/159 (42.77%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 KLPYADIAKAVKTLDESVLTTENVSAMKQFVPTSEEIEILKEYTGDKAQLGKAERYFLEIMAVPKLASRLSALHTKLSFQGKYEGAKESLDVLVGAVKQIRESKMLPKMMELVRAIGNYLNGGTFRGGAYGFKLDTLVKMGGVKGVDPKLTMMHYLAQM 477
            K+P +D+  AV  +DESVL  + V  + +F PT EE+E+LK YTGD+A LGK E+YFLE+M VP++ S+L     K+ F  +    K++L+ +  A +++R S+ L ++M+ +  +GN LN GT RG A GFKLD+L+K+   +  + K+T+MHYL ++
Sbjct:   20 KMPLSDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDRANLGKCEQYFLELMKVPRVESKLRVFSFKIQFGSQISDFKKNLNTVNSACEEVRNSQKLKEIMKKILYLGNTLNQGTARGSAIGFKLDSLLKLTDTRASNSKMTLMHYLCKV 178          
BLAST of mRNA_M-pyrifera_M_contig125935.5240.1 vs. uniprot
Match: A0A024G6H3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6H3_9STRA)

HSP 1 Score: 144 bits (363), Expect = 6.310e-37
Identity = 68/157 (43.31%), Postives = 107/157 (68.15%), Query Frame = 1
Query:    1 KLPYADIAKAVKTLDESVLTTENVSAMKQFVPTSEEIEILKEYTGDKAQLGKAERYFLEIMAVPKLASRLSALHTKLSFQGKYEGAKESLDVLVGAVKQIRESKMLPKMMELVRAIGNYLNGGTFRGGAYGFKLDTLVKMGGVKGVDPKLTMMHYLA 471
            K+P ++I KA+  +D  ++ +E ++ + Q  PT EE ++LK YTGD+  LG  E++FLE+M++P+   R+  +   LSF+ +    +  LD+L  A  ++ ES+   K++E + AIGNYLNGGT RG AYGFKLDTL K+  ++ +DPK+T+MH+LA
Sbjct:  650 KMPPSEIKKAILNVDTDLVNSETLNVLIQTAPTLEEQDLLKNYTGDEQLLGNLEKFFLEMMSIPRYTQRIKCIRFHLSFEDRVLETQTQLDILSAATDELTESRNFRKVLEHILAIGNYLNGGTPRGAAYGFKLDTLTKLHTLRSIDPKITLMHFLA 806          
BLAST of mRNA_M-pyrifera_M_contig125935.5240.1 vs. uniprot
Match: UPI0007AFC1A3 (formin-like protein 16 n=2 Tax=Arachis TaxID=3817 RepID=UPI0007AFC1A3)

HSP 1 Score: 134 bits (338), Expect = 8.390e-37
Identity = 69/159 (43.40%), Postives = 104/159 (65.41%), Query Frame = 1
Query:    1 KLPYADIAKAVKTLDESVLTTENVSAMKQFVPTSEEIEILKEYTGDKAQLGKAERYFLEIMAVPKLASRLSALHTKLSFQGKYEGAKESLDVLVGAVKQIRESKMLPKMMELVRAIGNYLNGGTFRGGAYGFKLDTLVKMGGVKGVDPKLTMMHYLAQM 477
            K+P  D+  AV  +DESVL  + V  + +F PT EE+E+LK YTGDK  LGK E+YFLE+M VP++ S+L     K+ F  +    K+SL+ +  A +++R+S  L ++M+ +  +GN LN GT RG A GFKLD+L+K+      + K+T+MHYL ++
Sbjct:    6 KMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKENLGKCEQYFLELMKVPRVESKLRVFSFKIQFLSQVTEFKKSLNAVNSACEEVRKSVKLKEIMKKILFLGNTLNQGTTRGSAIGFKLDSLLKLTDTHASNNKMTLMHYLCKV 164          
BLAST of mRNA_M-pyrifera_M_contig125935.5240.1 vs. uniprot
Match: A0A1Q3D989_CEPFO (FH2 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D989_CEPFO)

HSP 1 Score: 132 bits (333), Expect = 1.920e-36
Identity = 67/149 (44.97%), Postives = 99/149 (66.44%), Query Frame = 1
Query:   28 AVKTLDESVLTTENVSAMKQFVPTSEEIEILKEYTGDKAQLGKAERYFLEIMAVPKLASRLSALHTKLSFQGKYEGAKESLDVLVGAVKQIRESKMLPKMMELVRAIGNYLNGGTFRGGAYGFKLDTLVKMGGVKGVDPKLTMMHYLAQ 474
            AV  +DES+L  + V  + +F PT EE+E+LK YTGDK  LGK E+YFLE+M VP++ S+L     K+ F  +    K+SL+ +  A +++R S  L ++M+L+  +GN LN GT RG A GFKLD+L K+   + V+ K+T+MHYL +
Sbjct:    7 AVLAMDESILDVDQVENLIKFCPTKEEMELLKGYTGDKGTLGKCEQYFLELMKVPRVDSKLRVFSFKIQFGSQISEFKKSLNTVNSACEEVRNSSKLKEIMKLILHLGNMLNQGTARGSAIGFKLDSLSKLTDTRAVNSKMTLMHYLCK 155          
BLAST of mRNA_M-pyrifera_M_contig125935.5240.1 vs. uniprot
Match: A0A8J4V7P9_9ROSI (Formin-like protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4V7P9_9ROSI)

HSP 1 Score: 140 bits (353), Expect = 4.120e-36
Identity = 71/159 (44.65%), Postives = 106/159 (66.67%), Query Frame = 1
Query:    1 KLPYADIAKAVKTLDESVLTTENVSAMKQFVPTSEEIEILKEYTGDKAQLGKAERYFLEIMAVPKLASRLSALHTKLSFQGKYEGAKESLDVLVGAVKQIRESKMLPKMMELVRAIGNYLNGGTFRGGAYGFKLDTLVKMGGVKGVDPKLTMMHYLAQM 477
            K+P +D+  AV  LDESVL  + V  + +F PT EE+E+LK YTGD   LGK E+YFLE+M VP++ S+L     K+ F  +    K+SL+ +  A +++R+S  L ++M+L+  IGN LN GT RG A GFKLD+L+K+   +  + K+T+MHYL ++
Sbjct:  248 KMPLSDMMAAVLALDESVLDVDQVENLIKFCPTKEEMELLKGYTGDMENLGKCEQYFLELMKVPRVESKLRVFSFKIQFSSQISEFKKSLNTVNSACEEVRKSTKLKEIMKLILFIGNTLNQGTARGSAIGFKLDSLLKLTDTRASNSKMTLMHYLCKL 406          
BLAST of mRNA_M-pyrifera_M_contig125935.5240.1 vs. uniprot
Match: A0A1Q3BUA8_CEPFO (Formin-like protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BUA8_CEPFO)

HSP 1 Score: 140 bits (353), Expect = 4.390e-36
Identity = 70/158 (44.30%), Postives = 105/158 (66.46%), Query Frame = 1
Query:    1 KLPYADIAKAVKTLDESVLTTENVSAMKQFVPTSEEIEILKEYTGDKAQLGKAERYFLEIMAVPKLASRLSALHTKLSFQGKYEGAKESLDVLVGAVKQIRESKMLPKMMELVRAIGNYLNGGTFRGGAYGFKLDTLVKMGGVKGVDPKLTMMHYLAQ 474
            K+P +D+  AV  +DES+L  + V  + +F PT EE+E+LK YTGDK  LGK E+YFLE+M VP++ S+L     K+ F  +    K+SL+ +  A +++R S  L ++M+L+  +GN LN GT RG A GFKLD+L K+   + V+ K+T+MHYL +
Sbjct:  257 KMPLSDMMAAVLAMDESILDVDQVENLIKFCPTKEEMELLKGYTGDKETLGKCEQYFLELMKVPRVESKLRVFSFKIQFGSQISEFKKSLNTVNSACEEVRNSSKLKEIMKLILHLGNMLNQGTARGSAIGFKLDSLSKLTDTRAVNSKMTLMHYLCK 414          
BLAST of mRNA_M-pyrifera_M_contig125935.5240.1 vs. uniprot
Match: A0A1X0RVD9_RHIZD (Actin-binding FH2 n=1 Tax=Rhizopus microsporus TaxID=58291 RepID=A0A1X0RVD9_RHIZD)

HSP 1 Score: 135 bits (339), Expect = 6.230e-36
Identity = 72/160 (45.00%), Postives = 104/160 (65.00%), Query Frame = 1
Query:    1 KLPYADIAKAVKTLDESVLTTENVSAMKQFVPTSEEIEILKEYTGDKAQLGKAERYFLEIMAVPKLASRLSALHTKLSFQGKYEGAKESLDVLVGAVKQIRESKMLPKMMELVRAIGNYLNGGTFRGGAYGFKLDTLVKMGGVK----GVDPKLTMMHYL 468
            KLPY++I  A+  +D++ LT +N+ A++Q+VPT EEIEI+KEY GD   LG AERYF  IM +P+LA RL+ +  +  F  + +     +D++  AV +++ESK    +++ V AIGNYLNG T RG A GF +D L+KM   K    GV    T++HYL
Sbjct:   60 KLPYSEIRDAIWNIDDAKLTIDNLIAIRQYVPTKEEIEIVKEYQGDVNMLGNAERYFRAIMYIPRLADRLNCMIFRRRFDQELQEILPEMDIIQLAVTELKESKRFKHVLKTVLAIGNYLNGQTVRGNAVGFHIDALLKMRDTKAEGEGVSNVPTLLHYL 219          
BLAST of mRNA_M-pyrifera_M_contig125935.5240.1 vs. uniprot
Match: UPI001C71EA30 (formin-like protein 20 isoform X4 n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C71EA30)

HSP 1 Score: 140 bits (354), Expect = 1.030e-35
Identity = 70/159 (44.03%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 KLPYADIAKAVKTLDESVLTTENVSAMKQFVPTSEEIEILKEYTGDKAQLGKAERYFLEIMAVPKLASRLSALHTKLSFQGKYEGAKESLDVLVGAVKQIRESKMLPKMMELVRAIGNYLNGGTFRGGAYGFKLDTLVKMGGVKGVDPKLTMMHYLAQM 477
            K+P +D+  AV  +DESVL  + V  + +F PT EE+E+LK YTGDK  LGK E+YFLE+M VP++ S+L     K+ F  +    K+SL+ +  A +++R+S  L ++M+++  IGN LN GT RG A GFKLD+L+K+   +  + K+T+MHYL ++
Sbjct: 1047 KMPLSDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKENLGKCEQYFLELMKVPRVESKLRVFSFKIQFSSQISEFKKSLNTVNSACEEVRKSVKLKEVMKIILFIGNTLNQGTARGSAIGFKLDSLLKLTDTRASNSKMTLMHYLCKL 1205          
BLAST of mRNA_M-pyrifera_M_contig125935.5240.1 vs. uniprot
Match: UPI001C71AED2 (formin-like protein 20 isoform X3 n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C71AED2)

HSP 1 Score: 140 bits (354), Expect = 1.030e-35
Identity = 70/159 (44.03%), Postives = 107/159 (67.30%), Query Frame = 1
Query:    1 KLPYADIAKAVKTLDESVLTTENVSAMKQFVPTSEEIEILKEYTGDKAQLGKAERYFLEIMAVPKLASRLSALHTKLSFQGKYEGAKESLDVLVGAVKQIRESKMLPKMMELVRAIGNYLNGGTFRGGAYGFKLDTLVKMGGVKGVDPKLTMMHYLAQM 477
            K+P +D+  AV  +DESVL  + V  + +F PT EE+E+LK YTGDK  LGK E+YFLE+M VP++ S+L     K+ F  +    K+SL+ +  A +++R+S  L ++M+++  IGN LN GT RG A GFKLD+L+K+   +  + K+T+MHYL ++
Sbjct: 1047 KMPLSDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKENLGKCEQYFLELMKVPRVESKLRVFSFKIQFSSQISEFKKSLNTVNSACEEVRKSVKLKEVMKIILFIGNTLNQGTARGSAIGFKLDSLLKLTDTRASNSKMTLMHYLCKL 1205          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125935.5240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I690_9EUKA8.480e-5157.23Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
UPI000B8D085F3.810e-3742.77formin-like protein 20 n=1 Tax=Carica papaya TaxID... [more]
A0A024G6H3_9STRA6.310e-3743.31Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
UPI0007AFC1A38.390e-3743.40formin-like protein 16 n=2 Tax=Arachis TaxID=3817 ... [more]
A0A1Q3D989_CEPFO1.920e-3644.97FH2 domain-containing protein n=1 Tax=Cephalotus f... [more]
A0A8J4V7P9_9ROSI4.120e-3644.65Formin-like protein n=1 Tax=Castanea mollissima Ta... [more]
A0A1Q3BUA8_CEPFO4.390e-3644.30Formin-like protein (Fragment) n=1 Tax=Cephalotus ... [more]
A0A1X0RVD9_RHIZD6.230e-3645.00Actin-binding FH2 n=1 Tax=Rhizopus microsporus Tax... [more]
UPI001C71EA301.030e-3544.03formin-like protein 20 isoform X4 n=2 Tax=Carya il... [more]
UPI001C71AED21.030e-3544.03formin-like protein 20 isoform X3 n=1 Tax=Carya il... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125935contigM-pyrifera_M_contig125935:5..484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score142.5
Seed ortholog evalue1.7e-31
Seed eggNOG ortholog59689.Al_scaffold_0006_702
KEGG koko:K02184,ko:K04512
KEGG Pathwayko04310,ko04320,map04310,map04320
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the formin-like family
EggNOG OGs37M0R@33090,3GCH6@35493,3HX27@3699,KOG1922@1,KOG1922@2759
COG Functional cat.TZ
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04147,ko04812
Exons1
Model size480
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.8972805-CDS-M-pyrifera_M_contig125935:4..4841622815774.8972805-CDS-M-pyrifera_M_contig125935:4..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125935 5..484 +
1692277563.5323687-CDS-M-pyrifera_M_contig125935:4..4841692277563.5323687-CDS-M-pyrifera_M_contig125935:4..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125935 5..484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125935.5240.1prot_M-pyrifera_M_contig125935.5240.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125935 5..484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125935.5240.1

>prot_M-pyrifera_M_contig125935.5240.1 ID=prot_M-pyrifera_M_contig125935.5240.1|Name=mRNA_M-pyrifera_M_contig125935.5240.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
KLPYADIAKAVKTLDESVLTTENVSAMKQFVPTSEEIEILKEYTGDKAQL
GKAERYFLEIMAVPKLASRLSALHTKLSFQGKYEGAKESLDVLVGAVKQI
RESKMLPKMMELVRAIGNYLNGGTFRGGAYGFKLDTLVKMGGVKGVDPKL
TMMHYLAQM*
back to top

mRNA from alignment at M-pyrifera_M_contig125935:5..484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125935.5240.1 ID=mRNA_M-pyrifera_M_contig125935.5240.1|Name=mRNA_M-pyrifera_M_contig125935.5240.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig125935:5..484+ (Macrocystis pyrifera P11B4 male)
AAGCTGCCCTACGCAGACATTGCCAAGGCGGTCAAGACCCTCGACGAGAG CGTTCTCACCACCGAGAACGTGAGCGCCATGAAGCAGTTCGTCCCCACCT CTGAGGAGATTGAGATCCTCAAGGAGTACACCGGCGACAAGGCCCAGCTC GGCAAGGCAGAACGCTACTTCCTCGAGATCATGGCCGTGCCCAAGCTGGC CTCGCGCCTCTCCGCCTTGCACACCAAGCTGTCCTTCCAGGGCAAGTACG AGGGCGCCAAGGAGTCGCTCGACGTGCTTGTTGGAGCCGTCAAGCAGATT CGCGAGAGCAAGATGCTGCCCAAGATGATGGAGCTCGTGCGGGCCATTGG TAACTACCTCAACGGTGGCACCTTCCGCGGTGGAGCCTACGGTTTCAAGC TCGATACCCTCGTGAAGATGGGAGGGGTCAAGGGCGTCGACCCCAAGCTC ACCATGATGCACTACCTCGCGCAGATGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig125935:5..484+

>mRNA_M-pyrifera_M_contig125935.5240.1 ID=mRNA_M-pyrifera_M_contig125935.5240.1|Name=mRNA_M-pyrifera_M_contig125935.5240.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig125935:5..484+ (Macrocystis pyrifera P11B4 male)
AAGCTGCCCTACGCAGACATTGCCAAGGCGGTCAAGACCCTCGACGAGAG
CGTTCTCACCACCGAGAACGTGAGCGCCATGAAGCAGTTCGTCCCCACCT
CTGAGGAGATTGAGATCCTCAAGGAGTACACCGGCGACAAGGCCCAGCTC
GGCAAGGCAGAACGCTACTTCCTCGAGATCATGGCCGTGCCCAAGCTGGC
CTCGCGCCTCTCCGCCTTGCACACCAAGCTGTCCTTCCAGGGCAAGTACG
AGGGCGCCAAGGAGTCGCTCGACGTGCTTGTTGGAGCCGTCAAGCAGATT
CGCGAGAGCAAGATGCTGCCCAAGATGATGGAGCTCGTGCGGGCCATTGG
TAACTACCTCAACGGTGGCACCTTCCGCGGTGGAGCCTACGGTTTCAAGC
TCGATACCCTCGTGAAGATGGGAGGGGTCAAGGGCGTCGACCCCAAGCTC
ACCATGATGCACTACCTCGCGCAGATGTGAAAGCTGCCCTACGCAGACAT
TGCCAAGGCGGTCAAGACCCTCGACGAGAGCGTTCTCACCACCGAGAACG
TGAGCGCCATGAAGCAGTTCGTCCCCACCTCTGAGGAGATTGAGATCCTC
AAGGAGTACACCGGCGACAAGGCCCAGCTCGGCAAGGCAGAACGCTACTT
CCTCGAGATCATGGCCGTGCCCAAGCTGGCCTCGCGCCTCTCCGCCTTGC
ACACCAAGCTGTCCTTCCAGGGCAAGTACGAGGGCGCCAAGGAGTCGCTC
GACGTGCTTGTTGGAGCCGTCAAGCAGATTCGCGAGAGCAAGATGCTGCC
CAAGATGATGGAGCTCGTGCGGGCCATTGGTAACTACCTCAACGGTGGCA
CCTTCCGCGGTGGAGCCTACGGTTTCAAGCTCGATACCCTCGTGAAGATG
GGAGGGGTCAAGGGCGTCGACCCCAAGCTCACCATGATGCACTACCTCGC
GCAGATGTGA
back to top