mRNA_M-pyrifera_M_contig125927.5238.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125927.5238.1
Unique NamemRNA_M-pyrifera_M_contig125927.5238.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125927.5238.1 vs. uniprot
Match: A0A8K1C336_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C336_PYTOL)

HSP 1 Score: 82.0 bits (201), Expect = 3.730e-16
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 QALLFQKIQAGRFKFSQRVWRQTSSSCKDFIRRLLVVDPAQRLSAQQAINHRWLTPKRRRSVCTEQLSDAVAEIHQYQARKRWKKGVSVVRSVIKI 288
            QALLF+KI+AGRF F    W   S   KD I+++L+VDPA+R +A Q + H+W+T +    V T  L  A+ E+ +Y AR+R+K  V+ V++ + +
Sbjct:  633 QALLFRKIKAGRFVFDSPYWDNVSEDAKDLIKKMLIVDPAERWTATQLLEHKWITGE---EVSTTPLLTALEELRKYNARRRFKSAVTTVKATLSL 725          
BLAST of mRNA_M-pyrifera_M_contig125927.5238.1 vs. uniprot
Match: A0A0N7L8D9_PLAHL (Camk camk1 protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L8D9_PLAHL)

HSP 1 Score: 70.1 bits (170), Expect = 1.670e-13
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 QALLFQKIQAGRFKFSQRVWRQTSSSCKDFIRRLLVVDPAQRLSAQQAINHRWLTPKRRRSVCTEQLSDAVAEIHQYQARKRWKKGVSVVRSVI 282
            Q +LFQKI+ G++ F    W   S+  K+FI ++LVV+P  R SA + + H+W+T      V T  L  A+ E+ ++ ARK++K  V  V++ I
Sbjct:    2 QPILFQKIRKGKYYFDSPYWDNVSTDAKEFISKMLVVNPTNRASADELLAHKWITGS---DVATVPLMSALTELRRFHARKKFKAAVHSVQATI 92          
BLAST of mRNA_M-pyrifera_M_contig125927.5238.1 vs. uniprot
Match: A0A8K1CDJ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDJ7_PYTOL)

HSP 1 Score: 73.2 bits (178), Expect = 3.890e-13
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 QALLFQKIQAGRFKFSQRVWRQTSSSCKDFIRRLLVVDPAQRLSAQQAINHRWLTPKRRRSVCTEQLSDAVAEIHQYQARKRWKKGVSVVRSVIKI 288
            Q +LF+KI+ G+++F    W   S+  K+FI R+LVV+PA+R +A + + HRW+T      V T  L+ A+ E+ ++ ARK++K  V  V++ I +
Sbjct:  253 QPILFRKIRKGKYQFDSPYWDNVSTDAKEFIGRMLVVNPAERATAAELMQHRWITGT---DVATVPLTSALTELRRFHARKKFKAAVLSVQTTISL 345          
BLAST of mRNA_M-pyrifera_M_contig125927.5238.1 vs. uniprot
Match: A0A5D6YIS0_9STRA (Protein kinase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIS0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.870e-13
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   10 LFQKIQAGRFKFSQRVWRQTSSSCKDFIRRLLVVDPAQRLSAQQAINHRWLTPKRRRSVCTEQLSDAVAEIHQYQARKRWKKGVSVVRSVI 282
            LF+KI+ G+F+F    W   S   KD I ++LVV+PA+R +  Q + H+W+T      V T QL+ A+ E+ ++ AR+++K  VS V++ I
Sbjct:  178 LFKKIKRGKFQFDSPYWDHVSDDAKDLISKMLVVNPAERATVGQLLEHKWVTGT---EVATVQLTSALEELRRFNARRKFKAAVSTVQATI 265          
BLAST of mRNA_M-pyrifera_M_contig125927.5238.1 vs. uniprot
Match: K3WM37_GLOUD (Phosphorylase kinase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM37_GLOUD)

HSP 1 Score: 72.0 bits (175), Expect = 1.040e-12
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   10 LFQKIQAGRFKFSQRVWRQTSSSCKDFIRRLLVVDPAQRLSAQQAINHRWLTPKRRRSVCTEQLSDAVAEIHQYQARKRWKKGVSVVRSVI 282
            LF+KI+ G+++F    W   S   KD I ++LVV+PA+R +  Q + HRW+T      V T QL+ A+ E+ ++ AR+++K  VS V++ I
Sbjct:  261 LFKKIKKGKYQFDSPYWDHVSDEAKDLISKMLVVNPAERATVGQLLEHRWVTGA---EVATVQLTSALEELRRFNARRKFKAAVSTVQATI 348          
BLAST of mRNA_M-pyrifera_M_contig125927.5238.1 vs. uniprot
Match: A0A8K1CFS7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFS7_PYTOL)

HSP 1 Score: 72.0 bits (175), Expect = 1.040e-12
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   10 LFQKIQAGRFKFSQRVWRQTSSSCKDFIRRLLVVDPAQRLSAQQAINHRWLTPKRRRSVCTEQLSDAVAEIHQYQARKRWKKGVSVVRS 276
            LF+KI+ G+F+F    W   S   KD I  +LVV+PA R SA Q + H+W+T K    V T QL+ A+ E+ ++ AR+++K  +  V++
Sbjct:  260 LFKKIKRGKFQFDSPYWDHVSDDAKDLINHMLVVNPADRWSATQLLEHKWVTGK---EVATVQLTSALEELRRFNARRKFKAAIRTVQT 345          
BLAST of mRNA_M-pyrifera_M_contig125927.5238.1 vs. uniprot
Match: A0A7S3M3D2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M3D2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.310e-12
Identity = 35/93 (37.63%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   10 LFQKIQAGRFKFSQRVWRQTSSSCKDFIRRLLVVDPAQRLSAQQAINHRWLTPKRRRSVCTEQLSDAVAEIHQYQARKRWKKGVSVVRSVIKI 288
            LF KI+AG ++F  + W + S   KD IR+LLV+DP  RL+ +QA++H W+    +  + +  LS++++E+  +Q  K++K GV+V+ +V K+
Sbjct:   76 LFLKIRAGVYEFHPKYWDKISEEAKDLIRKLLVIDPVNRLTVEQALSHPWIHADGK-VLSSYDLSESLSEMELFQNSKKFKVGVNVLLAVQKM 167          
BLAST of mRNA_M-pyrifera_M_contig125927.5238.1 vs. uniprot
Match: A0A5D6XRP3_9STRA (Protein kinase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRP3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.980e-12
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 1
Query:    1 QALLFQKIQAGRFKFSQRVWRQTSSSCKDFIRRLLVVDPAQRLSAQQAINHRWLTPKRRRSVCTEQLSDAVAEIHQYQARKRWKKGVSVVRSVI 282
            Q +LF+KI+ G+F++    W   S   KDFI R+LVV+P  R +A Q + HRW+       V    L+ A+ E+ ++ ARK++K  V  V++ I
Sbjct:  160 QPILFRKIRKGKFQYDSPYWDNVSDDAKDFISRMLVVNPKDRATATQLLEHRWILDS---DVANVPLTSALTELRRFHARKKFKAAVHSVQATI 250          
BLAST of mRNA_M-pyrifera_M_contig125927.5238.1 vs. uniprot
Match: A0A8J5XWU7_DIALT (Protein kinase domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XWU7_DIALT)

HSP 1 Score: 69.7 bits (169), Expect = 5.580e-12
Identity = 35/92 (38.04%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    4 ALLFQKIQAGRFKFSQRVWRQTSSSCKDFIRRLLVVDPAQRLSAQQAINHRWLTPKRRRSVCTEQLSDAVAEIHQYQARKRWKKGVSVVRSV 279
            ALLFQ+I+AG+++F +  W   S   KDF+ +LLVVDP +R++A+ A+ H WL      +V T  LS     +   QAR + +  ++V R++
Sbjct:  220 ALLFQQIKAGKYEFLRPYWDPVSDQAKDFVAKLLVVDPKRRMTAEIALAHPWLASAAEHAVSTHNLSYVTENLKDRQARNKLRGIINVTRAM 311          
BLAST of mRNA_M-pyrifera_M_contig125927.5238.1 vs. uniprot
Match: A0A8C4NHL9_EPTBU (Calcium/calmodulin-dependent serine protein kinase a n=3 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4NHL9_EPTBU)

HSP 1 Score: 69.7 bits (169), Expect = 7.840e-12
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   10 LFQKIQAGRFKFSQRVWRQTSSSCKDFIRRLLVVDPAQRLSAQQAINHRWLTPKRRRSVCTEQLSDAVAEIHQYQARKRWKKGV 261
            LF+ I   ++K + R W  TS S KD +RR+L++DPA+R++  +A+NH WL  KR R  C   L + V ++ ++ AR++ K  V
Sbjct:  226 LFEGIARAKYKMNPRQWDNTSESAKDLVRRMLMLDPAERITVYEALNHPWL--KRERYACKIHLPETVEQLRKFNARRKLKGAV 307          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125927.5238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1C336_PYTOL3.730e-1641.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0N7L8D9_PLAHL1.670e-1337.23Camk camk1 protein kinase n=1 Tax=Plasmopara halst... [more]
A0A8K1CDJ7_PYTOL3.890e-1337.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6YIS0_9STRA6.870e-1338.46Protein kinase domain-containing protein n=1 Tax=P... [more]
K3WM37_GLOUD1.040e-1238.46Phosphorylase kinase n=1 Tax=Globisporangium ultim... [more]
A0A8K1CFS7_PYTOL1.040e-1239.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3M3D2_9STRA2.310e-1237.63Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A5D6XRP3_9STRA2.980e-1237.23Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A8J5XWU7_DIALT5.580e-1238.04Protein kinase domain-containing protein n=2 Tax=D... [more]
A0A8C4NHL9_EPTBU7.840e-1239.29Calcium/calmodulin-dependent serine protein kinase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125927contigM-pyrifera_M_contig125927:145..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue2e-11
Seed eggNOG ortholog42099.EPrPV00000013946
KEGG koko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.17
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.8300066-CDS-M-pyrifera_M_contig125927:144..4321622815774.8300066-CDS-M-pyrifera_M_contig125927:144..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125927 145..432 -
1692277563.498314-CDS-M-pyrifera_M_contig125927:144..4321692277563.498314-CDS-M-pyrifera_M_contig125927:144..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125927 145..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125927.5238.1prot_M-pyrifera_M_contig125927.5238.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125927 145..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125927.5238.1

>prot_M-pyrifera_M_contig125927.5238.1 ID=prot_M-pyrifera_M_contig125927.5238.1|Name=mRNA_M-pyrifera_M_contig125927.5238.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
QALLFQKIQAGRFKFSQRVWRQTSSSCKDFIRRLLVVDPAQRLSAQQAIN
HRWLTPKRRRSVCTEQLSDAVAEIHQYQARKRWKKGVSVVRSVIKI
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mRNA from alignment at M-pyrifera_M_contig125927:145..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125927.5238.1 ID=mRNA_M-pyrifera_M_contig125927.5238.1|Name=mRNA_M-pyrifera_M_contig125927.5238.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig125927:145..432- (Macrocystis pyrifera P11B4 male)
CAGGCCCTGCTCTTCCAGAAGATCCAAGCTGGTCGCTTCAAGTTCAGCCA GCGGGTGTGGCGGCAAACCAGCAGCAGCTGCAAAGACTTCATCCGTCGCC TGCTCGTCGTTGACCCGGCGCAGCGCCTGAGTGCGCAGCAGGCCATCAAC CACAGGTGGCTGACGCCGAAGCGGCGCCGCAGTGTGTGCACGGAGCAACT GTCGGACGCGGTGGCGGAAATCCACCAGTACCAGGCACGCAAGCGGTGGA AGAAGGGGGTGTCTGTTGTTCGCAGCGTGATCAAAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125927:145..432-

>mRNA_M-pyrifera_M_contig125927.5238.1 ID=mRNA_M-pyrifera_M_contig125927.5238.1|Name=mRNA_M-pyrifera_M_contig125927.5238.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig125927:145..432- (Macrocystis pyrifera P11B4 male)
CAGGCCCTGCTCTTCCAGAAGATCCAAGCTGGTCGCTTCAAGTTCAGCCA
GCGGGTGTGGCGGCAAACCAGCAGCAGCTGCAAAGACTTCATCCGTCGCC
TGCTCGTCGTTGACCCGGCGCAGCGCCTGAGTGCGCAGCAGGCCATCAAC
CACAGGTGGCTGACGCCGAAGCGGCGCCGCAGTGTGTGCACGGAGCAACT
GTCGGACGCGGTGGCGGAAATCCACCAGTACCAGGCACGCAAGCGGTGGA
AGAAGGGGGTGTCTGTTGTTCGCAGCGTGATCAAAATCCAGGCCCTGCTC
TTCCAGAAGATCCAAGCTGGTCGCTTCAAGTTCAGCCAGCGGGTGTGGCG
GCAAACCAGCAGCAGCTGCAAAGACTTCATCCGTCGCCTGCTCGTCGTTG
ACCCGGCGCAGCGCCTGAGTGCGCAGCAGGCCATCAACCACAGGTGGCTG
ACGCCGAAGCGGCGCCGCAGTGTGTGCACGGAGCAACTGTCGGACGCGGT
GGCGGAAATCCACCAGTACCAGGCACGCAAGCGGTGGAAGAAGGGGGTGT
CTGTTGTTCGCAGCGTGATCAAAATC
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