mRNA_M-pyrifera_M_contig12591.5234.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12591.5234.1
Unique NamemRNA_M-pyrifera_M_contig12591.5234.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12591.5234.1 vs. uniprot
Match: D8LL06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL06_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 1.130e-119
Identity = 170/222 (76.58%), Postives = 190/222 (85.59%), Query Frame = 1 
Query:   31 QKMEREFYQN---------QKEFKRLAQLKKELEDLPKQRQCHRYRWTQTETTFDVEIPMQKACEDKDLYLVVEKDQMQVAIKTDEAFGAITGVFPGDVDASSCSFRIHNHNNEPYIHIEVVKMTSPGTYEFWNELLQGEVESPTIRFAGRTARYGWKQNAETIEVEIPVPDDVTKRKTKLDLDPAGASMHLSFSNRPDFEPLEGKFKALISPLDSVWMLGE 669
            Q++ERE+Y+          Q++  RL +L+  L DLP QRQCHRYRWTQTETTFDVEIPM KAC D+DLYLVVEKDQMQVAIKTDE+FGAITGVFPGDVDA SCSFRIH+  NEPYIH+E+VK+T+PG YEFW+ELLQGE ESPTIRF G T RY WKQNAETIE++IPVPDDVTKRKT LDLDPAG  +H+SFSNRPDFEPLEGKFK LISPLDSVWMLGE
Sbjct:   16 QRLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSFSNRPDFEPLEGKFKGLISPLDSVWMLGE 237
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BLAST of mRNA_M-pyrifera_M_contig12591.5234.1 vs. uniprot
Match: A0A836CLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX2_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.190e-36
Identity = 77/226 (34.07%), Postives = 118/226 (52.21%), Query Frame = 1 
Query:   40 EREFYQNQK-EFKRLAQLKKELEDLPKQRQCHRYRWTQTETTFDVEIPMQKACEDKDLYLVVEKDQMQVAIKTDEAFGAITGVFPGDVDASSCSFRIHNHNN-EPYIHIEVVKMTSPGTYEFWNELLQGEVESPTIRFAGRTARYGWKQNAETIEVEIPVPDDVTKRKTKLDLDPAG--------------ASMHLSFSNRPDFEPLEGKFKALISPLDSVWMLGE 669
            ER FY+ Q+ E K   +  +   ++P QR+CH+YRW QT     VE+P+ +AC+ +DL  V+ +  MQ++I++D  F  + G FPG VD  + ++ +H+  + + Y+ + + K+  PGT E W  LL+GE  +PT+RF G T  Y W Q    I+V   VP   T   T++D    G              A + LS    P+    E +F+  I   D  WML E
Sbjct:   20 ERSFYKQQEGEGKARIRPNRGAAEVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDE 245
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12591.5234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL06_ECTSI1.130e-11976.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLX2_9STRA1.190e-3634.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12591contigM-pyrifera_M_contig12591:5996..8808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-11_006260.1
Exons4
Model size669
Cds size669
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12591.5234.1prot_M-pyrifera_M_contig12591.5234.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12591 5996..8808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.622025-CDS-M-pyrifera_M_contig12591:5995..61661622815774.622025-CDS-M-pyrifera_M_contig12591:5995..6166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12591 5996..6166 -
1692277563.3916063-CDS-M-pyrifera_M_contig12591:5995..61661692277563.3916063-CDS-M-pyrifera_M_contig12591:5995..6166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12591 5996..6166 -
1622815774.6397502-CDS-M-pyrifera_M_contig12591:6461..65741622815774.6397502-CDS-M-pyrifera_M_contig12591:6461..6574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12591 6462..6574 -
1692277563.4005985-CDS-M-pyrifera_M_contig12591:6461..65741692277563.4005985-CDS-M-pyrifera_M_contig12591:6461..6574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12591 6462..6574 -
1622815774.6524746-CDS-M-pyrifera_M_contig12591:7362..74681622815774.6524746-CDS-M-pyrifera_M_contig12591:7362..7468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12591 7363..7468 -
1692277563.408094-CDS-M-pyrifera_M_contig12591:7362..74681692277563.408094-CDS-M-pyrifera_M_contig12591:7362..7468Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12591 7363..7468 -
1622815774.6672041-CDS-M-pyrifera_M_contig12591:8529..88081622815774.6672041-CDS-M-pyrifera_M_contig12591:8529..8808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12591 8530..8808 -
1692277563.4174016-CDS-M-pyrifera_M_contig12591:8529..88081692277563.4174016-CDS-M-pyrifera_M_contig12591:8529..8808Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12591 8530..8808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12591.5234.1

>prot_M-pyrifera_M_contig12591.5234.1 ID=prot_M-pyrifera_M_contig12591.5234.1|Name=mRNA_M-pyrifera_M_contig12591.5234.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=223bp
MFCRRFEYKTQKMEREFYQNQKEFKRLAQLKKELEDLPKQRQCHRYRWTQ
TETTFDVEIPMQKACEDKDLYLVVEKDQMQVAIKTDEAFGAITGVFPGDV
DASSCSFRIHNHNNEPYIHIEVVKMTSPGTYEFWNELLQGEVESPTIRFA
GRTARYGWKQNAETIEVEIPVPDDVTKRKTKLDLDPAGASMHLSFSNRPD
FEPLEGKFKALISPLDSVWMLGE
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mRNA from alignment at M-pyrifera_M_contig12591:5996..8808-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12591.5234.1 ID=mRNA_M-pyrifera_M_contig12591.5234.1|Name=mRNA_M-pyrifera_M_contig12591.5234.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2813bp|location=Sequence derived from alignment at M-pyrifera_M_contig12591:5996..8808- (Macrocystis pyrifera P11B4 male)
ATGTTTTGTCGACGTTTTGAATACAAAACGCAGAAAATGGAGCGAGAGTT
CTACCAGAACCAGAAGGAGTTCAAGAGGCTTGCACAGCTGAAGAAGGAGC
TGGAGGACTTGCCGAAACAAAGGCAATGCCACCGGTACAGATGGACACAA
ACGGAGACCACGTTCGATGTGGAGATACCGATGCAGAAGGCGTGCGAGGA
CAAAGATCTATATCTCGTCGTTGAGAAGGACCAGATGCAGGTGGCCATCA
AGACAGACGAGGCCTTTGGGGCGATAACGGTGGGTGGCAACATGATGTCT
GCTTACCTTTTGCTGCTGCGAGTTTTTTCCAGCTCTATTTCCAAGTTGTA
TTCGGGTTTCTCCAAGAACGTGGGTTAACATTTCTTAGCCAAGGGGGCTC
ACAAGTGGTGTCTACCTCCGTGTTTTGTACCAGGTATCGGTTGATGTTTG
TCGCCAACGCGGCGATGTATCAAGCCGGCGTGTTATACGCTTTACTCGTG
CATGTGCTTTGGCAAGGAAGCTCATGAGAGACGTTGTGTCAGCCCGTGTT
ACTCGTGCTTATTTTGTTTGCTGCCTATTTTAACAGCCCTTCTGGCAGTG
TAGCTGTAGTCGTTTTGGAGTGTTTTGGCGTTGAATGGCACCACTGTGGA
CAGCAACACTGCCATCTCATAGTCATGACATGCAGTAGAGAGACGTCTGT
GTCGGCTGAAGTCTGTGTAGCCGCCGCACGCTGGTTGTCGTCAAGTATGC
AACATGGGTTGTGTTCTTCGTGATTGTTGGGGACATTGGATGGGAGAGAT
AGCCATGACTCTTGGACCCCGCGTGTATTTTGCTTTCGGTTTTTCCATGC
AGCAGTGCTTGCAGACTCCTTGCGCCCTTCTGTTACCACTGTATGGATCA
TGACGGCAGCATTTTGTACGTACGAGACACGCACACAGCTTGAGTCTTAC
CTTCGCAGATATAGGCACGAGGGAATATGTGCCGAGTCAGAACCATCCCC
GAACACAGGCTCCATCCCACCATGCGGACAGCTCCTGCGGGTAGGGACGA
TGCTCGCGTGGCGACACATTTCAAGGATTTCACTCGTGCTTTTAAGCGTT
GTTGCCCCTTAACGCCCTGCCATGAGTAAAAGAAACGTCGTTTTCGCCAA
CCCTAGTCTGCTGCTCTCGTACGGCTTAAATTCCTGCCCTTCGACGAACT
TTGCGAAAGCTCTAGTCTATCGTACCGGTATCTGGTACACTGGTACACAC
ACAAGGTTCGGCTACATGACAAATAGGTTGCGGTTTCCGCGCTTCCGATC
AGGCCGTAACCGCACATTATCGCGTTCCTAACGGGTGCAGGGCGTGTTCC
CTGGCGACGTGGATGCATCGAGCTGCAGCTTCCGGATTCACAACCACAAC
AACGAGCCGTACATTCACATTGAAGTCGTCAAGATGACCTCACCAGGTTA
GTCGGTGCTCAACGTGCAGCGTGTGCGTAGTGCATGAGTCTAAAACACAT
CTGAAATGATTCGCCTGCAGTGTTGGCATTGCTATCCTCGTCTCGTGCCT
CCCTCGTAAATTGGCCGCTTGGTGTCTTCCTGAGTGAAGAGCGCAGCGGA
GAAGGGCTTTGGCTCCCCATCCAAGTCATGTATGTTGTAACAGTCTATCA
CTTGATGACACGCCACCCTTCCTTGCACCGTCGTGCGTCTTGTACTTCAC
GCCCGCTTGGGGTGTCACTTGTGTCAGAAACGGACATACTGCCTGCCGGT
CAGCGCAAAGCATGTCGAATTGGTCTCAAAACCGGGAGACGTGATTACCA
CCCTTGCTACTCGCGGTCTCGCGTGGTATCTCCAGCGCTTTTGTTGAAAA
TTTCGGCGGATACATGCTGTCTGAGGGCATGGTGCAGTGGTGGCTCTATC
CCTACAGTGATATTATCGGTGCCCCGACACTTTATCCTTATTTCACCATA
CGCTTCGGTAGTGTATGGGTAGTTCCCCTGAATGCGGTATCGTTGCGAAG
CCGCAGACAGCACCCTATCGCCTGTCCAGCCTAACTCGGGCTAAGCACGG
TAGGGATCAGCCGTAGGACAGACACACCACCAAGGCTTTCGTGGACACCT
GAGGGCCCAAAATTGAAACCGGTCATAGTGCGCAAGAGAGAGAAACCGTT
GTCCCTGAAAGTTGTCGTCGTCGTTTCTTGCCTACTGTGGGCGATTTAAT
GCTGAGTGCACCACGTGCGCAATGTACGCCTCAGGAACGTACGAATTCTG
GAACGAGCTCCTCCAGGGCGAAGTGGAAAGCCCTACCATCCGCTTCGCCG
GGCGAACAGCGCGGTACGGCTGGAAGCAGAACGCCGAGACTATCGAGGTA
GGTACCCGCGGGGATAAACTAGAATACGGAACTGCTGTACTGCTGTACTA
CACAGCACTACTGTAGTCATCCGCTGGGTGCCCATTGGCCCTTTCCTCGG
CGAGCCAAACACCACCCCTCGCGTTACCGAATGTGCTTCTACAGCTGTAT
ATACATGGTGGGTGGTTCCGCTATTTTGTTCATGCCACCCTGTCTCTCCG
CTTGGCGCTTTGCTTTGTTCCCCCGTCTGTCCGCTGAACTGAACCTGATG
CCCTTCCCTTCGCTGGCCTACCGTGTCAATCGTGCGATGAAGGTGGAGAT
TCCCGTTCCGGACGACGTAACCAAGCGAAAAACGAAGCTTGACTTGGACC
CGGCTGGAGCTTCAATGCACCTGTCCTTCTCGAACAGGCCGGATTTCGAA
CCACTCGAAGGGAAATTCAAGGCACTGATCAGCCCGCTCGACTCCGTCTG
GATGTTGGGTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12591:5996..8808-

>mRNA_M-pyrifera_M_contig12591.5234.1 ID=mRNA_M-pyrifera_M_contig12591.5234.1|Name=mRNA_M-pyrifera_M_contig12591.5234.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1338bp|location=Sequence derived from alignment at M-pyrifera_M_contig12591:5996..8808- (Macrocystis pyrifera P11B4 male)
ATGTTTTGTCGACGTTTTGAATACAAAACGCAGAAAATGGAGCGAGAGTT
CTACCAGAACCAGAAGGAGTTCAAGAGGCTTGCACAGCTGAAGAAGGAGC
TGGAGGACTTGCCGAAACAAAGGCAATGCCACCGGTACAGATGGACACAA
ACGGAGACCACGTTCGATGTGGAGATACCGATGCAGAAGGCGTGCGAGGA
CAAAGATCTATATCTCGTCGTTGAGAAGGACCAGATGCAGGTGGCCATCA
AGACAGACGAGGCCTTTGGGGCGATAACGATGTTTTGTCGACGTTTTGAA
TACAAAACGCAGAAAATGGAGCGAGAGTTCTACCAGAACCAGAAGGAGTT
CAAGAGGCTTGCACAGCTGAAGAAGGAGCTGGAGGACTTGCCGAAACAAA
GGCAATGCCACCGGTACAGATGGACACAAACGGAGACCACGTTCGATGTG
GAGATACCGATGCAGAAGGCGTGCGAGGACAAAGATCTATATCTCGTCGT
TGAGAAGGACCAGATGCAGGTGGCCATCAAGACAGACGAGGCCTTTGGGG
CGATAACGGGCGTGTTCCCTGGCGACGTGGATGCATCGAGCTGCAGCTTC
CGGATTCACAACCACAACAACGAGCCGTACATTCACATTGAAGTCGTCAA
GATGACCTCACCAGGGCGTGTTCCCTGGCGACGTGGATGCATCGAGCTGC
AGCTTCCGGATTCACAACCACAACAACGAGCCGTACATTCACATTGAAGT
CGTCAAGATGACCTCACCAGGAACGTACGAATTCTGGAACGAGCTCCTCC
AGGGCGAAGTGGAAAGCCCTACCATCCGCTTCGCCGGGCGAACAGCGCGG
TACGGCTGGAAGCAGAACGCCGAGACTATCGAGGAACGTACGAATTCTGG
AACGAGCTCCTCCAGGGCGAAGTGGAAAGCCCTACCATCCGCTTCGCCGG
GCGAACAGCGCGGTACGGCTGGAAGCAGAACGCCGAGACTATCGAGGTGG
AGATTCCCGTTCCGGACGACGTAACCAAGCGAAAAACGAAGCTTGACTTG
GACCCGGCTGGAGCTTCAATGCACCTGTCCTTCTCGAACAGGCCGGATTT
CGAACCACTCGAAGGGAAATTCAAGGCACTGATCAGCCCGCTCGACTCCG
TCTGGATGTTGGGTGAGGTGGAGATTCCCGTTCCGGACGACGTAACCAAG
CGAAAAACGAAGCTTGACTTGGACCCGGCTGGAGCTTCAATGCACCTGTC
CTTCTCGAACAGGCCGGATTTCGAACCACTCGAAGGGAAATTCAAGGCAC
TGATCAGCCCGCTCGACTCCGTCTGGATGTTGGGTGAG
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