mRNA_M-pyrifera_M_contig125904.5233.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125904.5233.1
Unique NamemRNA_M-pyrifera_M_contig125904.5233.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125904.5233.1 vs. uniprot
Match: A0A6H5L2A1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A1_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 5.990e-38
Identity = 69/87 (79.31%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:    1 QVNKYHESALIEAQILRDVNKRERSIRRSPNESSLCVEMFGQLEHQGHCCLVFECLGRSLYDFLKKNGYRGFPMSVLRPIARELLQV 261
            +V KYHESALIEAQILRDVN RERS RR+  ++SLCVEMF Q EHQGHCCLVFECLGRSLYD+LKKN YRGFP+ VLR I+RELLQ 
Sbjct:  455 KVAKYHESALIEAQILRDVNLRERSTRRNTIDTSLCVEMFAQFEHQGHCCLVFECLGRSLYDYLKKNDYRGFPIDVLRSISRELLQA 541
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BLAST of mRNA_M-pyrifera_M_contig125904.5233.1 vs. uniprot
Match: D7FR38_ECTSI (AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR38_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.320e-30
Identity = 63/87 (72.41%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    1 QVNKYHESALIEAQILRDVNKRERSIRRSPNESSLCVEMFGQLEHQGHCCLVFECLGRSLYDFLKKNGYRGFPMSVLRPIARELLQV 261
            +V KYHESALIEAQILRDVN RERS RR+  ++SLCVEMF Q EHQ       ECLGRSLYDFLKKN YRGFP+ VLR I+RELLQ 
Sbjct:   53 KVAKYHESALIEAQILRDVNFRERSTRRNTIDTSLCVEMFAQFEHQ-----CSECLGRSLYDFLKKNDYRGFPIDVLRSISRELLQA 134
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BLAST of mRNA_M-pyrifera_M_contig125904.5233.1 vs. uniprot
Match: A0A835Z1U5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.830e-21
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 QVNKYHESALIEAQILRDVNKRERSIRRSPNESSLCVEMFGQLEHQGHCCLVFECLGRSLYDFLKKNGYRGFPMSVLRPIARELLQV 261
            +V +YHESALIEA ILRDVN      R     ++LCV +  Q + +GHCCLVFE +G SLYD LK+N YRGFP+  +R  AR+LL+ 
Sbjct:  221 RVKRYHESALIEADILRDVN------RAGGAGAALCVRLLDQFDARGHCCLVFERMGPSLYDVLKRNDYRGFPLRYVRDFARQLLEA 301
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BLAST of mRNA_M-pyrifera_M_contig125904.5233.1 vs. uniprot
Match: A0A7S3QFB1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QFB1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.920e-20
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    4 VNKYHESALIEAQILRDVNKRERSIRRSPNESSLCVEMFGQLEHQ-GHCCLVFECLGRSLYDFLKKNGYRGFPMSVLRPIARELLQV 261
            V +YHESALIEA IL+DVN      RR     SLCV M    + Q GHCCLVFECLGRSLYDF+K +G++ FP+  +R  AR++L  
Sbjct:  660 VKRYHESALIEADILKDVN------RRGGRGRSLCVVMLRHFDLQRGHCCLVFECLGRSLYDFMKTHGFKPFPLFCVRDFARQILDA 740
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BLAST of mRNA_M-pyrifera_M_contig125904.5233.1 vs. uniprot
Match: A0A7S1BPD7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPD7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.370e-18
Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    4 VNKYHESALIEAQILRDVNKRERSIRRSPNESSLCVEMFGQLEHQGHCCLVFECLGRSLYDFLKKNGYRGFPMSVLRPIARELLQV 261
            V +YHESA IEA ILRDVN R            LCV MF     +GH CLVFE LGRSLYDFLK++ YR FP+  ++  A +LL  
Sbjct:   73 VRRYHESAKIEADILRDVNGR------GGRGVGLCVRMFRSFNFKGHYCLVFESLGRSLYDFLKRHDYRPFPLYCVKDFASQLLDA 152
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BLAST of mRNA_M-pyrifera_M_contig125904.5233.1 vs. uniprot
Match: A0A7S1BLV6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLV6_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 6.670e-18
Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    4 VNKYHESALIEAQILRDVNKRERSIRRSPNESSLCVEMFGQLEHQGHCCLVFECLGRSLYDFLKKNGYRGFPMSVLRPIARELLQV 261
            V +YHESA IEA ILRDVN R            LCV MF     +GH CLVFE LGRSLYDFLK++ YR FP+  ++  A +LL  
Sbjct:   73 VRRYHESAKIEADILRDVNGR------GGRGVGLCVRMFRSFNFKGHYCLVFESLGRSLYDFLKRHDYRPFPLYCVKDFASQLLDA 152
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BLAST of mRNA_M-pyrifera_M_contig125904.5233.1 vs. uniprot
Match: A0A2P4Y3X6_9STRA (CMGC/CLK protein kinase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3X6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.620e-17
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 QVNKYHESALIEAQILRDVNKRERSIRRSPNESSLCVEMFGQLEHQGHCCLVFECLGRSLYDFLKKNGYRGFPMSVLRPIARELL 255
            +V+KY ESA IEA IL+DVN +++      N  SLCV MF  LE++GH C+VFE LG SLYD+LK + Y+ FP+  +R  A +LL
Sbjct:   45 KVDKYTESAKIEAAILQDVNDKDK------NNESLCVRMFKWLEYKGHVCMVFERLGCSLYDYLKNHDYKPFPLHCIRAYAWQLL 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig125904.5233.1 vs. uniprot
Match: A0A225WAS6_9STRA (CMGC/CLK protein kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WAS6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.750e-17
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 QVNKYHESALIEAQILRDVNKRERSIRRSPNESSLCVEMFGQLEHQGHCCLVFECLGRSLYDFLKKNGYRGFPMSVLRPIARELL 255
            +V+KY ESA IEA IL DVN +++      N  SLCV MF   EH+GH C+VFE LG SLYD+LK + Y+ FP+  +R  A +LL
Sbjct:  224 KVDKYTESAKIEAAILEDVNDKDK------NNESLCVRMFKWFEHKGHVCMVFERLGCSLYDYLKNHDYKPFPLHCIRAYAWQLL 302
[Close]
BLAST of mRNA_M-pyrifera_M_contig125904.5233.1 vs. uniprot
Match: M4C289_HYAAE (Protein kinase domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C289_HYAAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.130e-17
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 QVNKYHESALIEAQILRDVNKRERSIRRSPNESSLCVEMFGQLEHQGHCCLVFECLGRSLYDFLKKNGYRGFPMSVLRPIARELL 255
            +V+KY ESA IEA IL+DVN +++      N  SLCV MF  LE++GH C+VFE LG SLYD+LK + Y+ FP+  +R  A +LL
Sbjct:  232 KVDKYTESAKIEAAILQDVNDKDK------NNESLCVRMFKWLEYKGHVCMVFERLGCSLYDYLKNHDYKPFPLHCIRAYAWQLL 310
[Close]
BLAST of mRNA_M-pyrifera_M_contig125904.5233.1 vs. uniprot
Match: A0A329S7G9_9STRA (Protein kinase domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A329S7G9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.240e-17
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 QVNKYHESALIEAQILRDVNKRERSIRRSPNESSLCVEMFGQLEHQGHCCLVFECLGRSLYDFLKKNGYRGFPMSVLRPIARELL 255
            QV KY ESA IEA IL+DVN +++      N  SLCV MF   E++GH C+VFE LG SLYD+LK + Y+ FP+  +R  A +LL
Sbjct:  211 QVEKYTESAKIEAAILQDVNDKDK------NNESLCVRMFKWFEYKGHVCMVFERLGCSLYDYLKSHDYKPFPLHCIRAYAWQLL 289
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125904.5233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2A1_9PHAE5.990e-3879.31Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FR38_ECTSI1.320e-3072.41AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinas... [more]
A0A835Z1U5_9STRA4.830e-2154.02Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3QFB1_9STRA1.920e-2055.17Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1BPD7_9STRA1.370e-1852.33Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1BLV6_9STRA6.670e-1852.33Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A2P4Y3X6_9STRA1.620e-1751.76CMGC/CLK protein kinase (Fragment) n=1 Tax=Phytoph... [more]
A0A225WAS6_9STRA1.750e-1751.76CMGC/CLK protein kinase n=1 Tax=Phytophthora megak... [more]
M4C289_HYAAE2.130e-1751.76Protein kinase domain-containing protein n=1 Tax=H... [more]
A0A329S7G9_9STRA3.240e-1751.76Protein kinase domain-containing protein n=11 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125904contigM-pyrifera_M_contig125904:111..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue4.8e-15
Seed eggNOG ortholog272952.HpaP813204
KEGG koko:K00924,ko:K08287,ko:K08823
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010468,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031974,GO:0031981,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045111,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0140096,GO:1901564
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs3Q7K6@4776,KOG0667@1,KOG0671@2759
EC2.7.12.1
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03041
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.5835853-CDS-M-pyrifera_M_contig125904:110..3801622815774.5835853-CDS-M-pyrifera_M_contig125904:110..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125904 111..380 +
1692277563.3743846-CDS-M-pyrifera_M_contig125904:110..3801692277563.3743846-CDS-M-pyrifera_M_contig125904:110..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125904 111..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125904.5233.1prot_M-pyrifera_M_contig125904.5233.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125904 111..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125904.5233.1

>prot_M-pyrifera_M_contig125904.5233.1 ID=prot_M-pyrifera_M_contig125904.5233.1|Name=mRNA_M-pyrifera_M_contig125904.5233.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
QVNKYHESALIEAQILRDVNKRERSIRRSPNESSLCVEMFGQLEHQGHCC
LVFECLGRSLYDFLKKNGYRGFPMSVLRPIARELLQVGG*
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mRNA from alignment at M-pyrifera_M_contig125904:111..380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125904.5233.1 ID=mRNA_M-pyrifera_M_contig125904.5233.1|Name=mRNA_M-pyrifera_M_contig125904.5233.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig125904:111..380+ (Macrocystis pyrifera P11B4 male)
CAGGTGAATAAATACCACGAATCGGCGCTGATCGAGGCTCAGATACTCCG
CGACGTTAACAAGCGGGAGCGGAGCATCAGGCGATCGCCAAATGAGTCCT
CTCTGTGCGTGGAGATGTTTGGGCAGCTGGAGCATCAGGGGCACTGCTGC
CTTGTTTTTGAGTGCCTCGGGCGCTCACTTTACGACTTCCTGAAGAAGAA
TGGATACAGGGGTTTCCCCATGAGCGTTCTCCGCCCCATCGCAAGGGAGT
TGCTGCAGGTGGGAGGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125904:111..380+

>mRNA_M-pyrifera_M_contig125904.5233.1 ID=mRNA_M-pyrifera_M_contig125904.5233.1|Name=mRNA_M-pyrifera_M_contig125904.5233.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig125904:111..380+ (Macrocystis pyrifera P11B4 male)
CAGGTGAATAAATACCACGAATCGGCGCTGATCGAGGCTCAGATACTCCG
CGACGTTAACAAGCGGGAGCGGAGCATCAGGCGATCGCCAAATGAGTCCT
CTCTGTGCGTGGAGATGTTTGGGCAGCTGGAGCATCAGGGGCACTGCTGC
CTTGTTTTTGAGTGCCTCGGGCGCTCACTTTACGACTTCCTGAAGAAGAA
TGGATACAGGGGTTTCCCCATGAGCGTTCTCCGCCCCATCGCAAGGGAGT
TGCTGCAGGTGGGAGGGTAGCAGGTGAATAAATACCACGAATCGGCGCTG
ATCGAGGCTCAGATACTCCGCGACGTTAACAAGCGGGAGCGGAGCATCAG
GCGATCGCCAAATGAGTCCTCTCTGTGCGTGGAGATGTTTGGGCAGCTGG
AGCATCAGGGGCACTGCTGCCTTGTTTTTGAGTGCCTCGGGCGCTCACTT
TACGACTTCCTGAAGAAGAATGGATACAGGGGTTTCCCCATGAGCGTTCT
CCGCCCCATCGCAAGGGAGTTGCTGCAGGTGGGAGGGTAG
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