mRNA_M-pyrifera_M_contig12587.5232.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12587.5232.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.240e-22 Identity = 59/124 (47.58%), Postives = 77/124 (62.10%), Query Frame = 1
Query: 1 CLDAFMVAFHER-----WFTCTKQLQLTSLHFCVEYRNKTTVHLRVDASTPRRLLTAAGTAPRSSDRRGSTRVPQVRARRVTWKLTSAAMLSRPIDAFSDLKQLSFGHCFNQAIEGVTWPASLQ 357
CL+A +VA +E W+T TK+LQL SL FC+ RN TVHL VD PRRLL +A P R TRVP++R+RRVTW + +AA L PI A +D++ L FG F ++E V WP L+
Sbjct: 51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLR 174
BLAST of mRNA_M-pyrifera_M_contig12587.5232.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 102 bits (254), Expect = 5.740e-20 Identity = 56/124 (45.16%), Postives = 73/124 (58.87%), Query Frame = 1
Query: 1 CLDAFMVAFHER-----WFTCTKQLQLTSLHFCVEYRNKTTVHLRVDASTPRRLLTAAGTAPRSSDRRGSTRVPQVRARRVTWKLTSAAMLSRPIDAFSDLKQLSFGHCFNQAIEGVTWPASLQ 357
CL+A +VA +E W+T TK+ QL SL FC+ RN T+ L+VD+ TPRRLL AA P R TRVP++RARRVTW + +AA L I + D L F F ++E V WP L+
Sbjct: 12 CLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLK 135
BLAST of mRNA_M-pyrifera_M_contig12587.5232.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 5.110e-18 Identity = 55/114 (48.25%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 1 CLDAFMVAFHER-----WFTCTKQLQLTSLHFCVEYRNKTTVHLRVDASTPRRLLTAAGTAPRSSDRRGSTRVPQVRARRVTWKLTSAAMLSRPIDAFSDLKQLSFGHCFNQAI 327
CL+A ++A +E W+T TK+LQL SL FCV RN T+HL+VDA PRRLL A P + TRVP++RARRVTW + AA LS PI A +D+ L FG +A+
Sbjct: 113 CLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFGETSLEAL 226
BLAST of mRNA_M-pyrifera_M_contig12587.5232.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 8.790e-17 Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 1 CLDAFMVAFHER-----WFTCTKQLQLTSLHFCVEYRNKTTVHLRVDASTPRRLLTAAGTAPRSSDRRGSTRVPQVRARRVTWKLTSAAMLSRPIDAFSDLKQLSFGHCFNQAIEGVTWPASLQ 357
CL VA +E W+T TK+LQL SL C+ R+ T+HL VDA TPRRLL AA R TRVP++RARR TW + +A+ + I A D+ L FG F+ +++ + WP L+
Sbjct: 136 CLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLK 259
BLAST of mRNA_M-pyrifera_M_contig12587.5232.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 9.010e-14 Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 1
Query: 31 ERWFTCTKQLQLTSLHFCVEYRNKTTVHLRVDASTPRRLLTAAGTAPRSSDRRGSTRVPQVRARRVTWKLTSAAMLSRPIDAFSDLKQLSFGHCFNQAIEGVTWPASL 354
+ WF TK+LQL SL C R+ +HLRV+ STP RLL A + S+ TRVP++RAR V+W LTSA LS I A + + +F N ++ V WP SL
Sbjct: 47 KHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADSPSDGSEE--GTRVPRLRAREVSWDLTSADRLSSSIYALASAQVFTFSDSLNAVLDAVVWPTSL 152
BLAST of mRNA_M-pyrifera_M_contig12587.5232.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 1.310e-8 Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 1
Query: 1 CLDAFMVAFHE-------RWFTCTKQLQLTSLHFCVEYRNKTTVHLRVDASTPRRLLTA--AGTAP--RSSDRRGSTRVPQVRARRVTWKLTSAAMLSRP---IDAFSDLKQLSFGHCFNQAIEGVTWPASL 354
CLDAF++A + RW+ T +LQLTSL C R + +H+ VD TPR L ++ A T P RS + S+RVP VRA R+TW L+ A+L + + +S+ +L C + V WP L
Sbjct: 11 CLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGL 142
BLAST of mRNA_M-pyrifera_M_contig12587.5232.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 56.2 bits (134), Expect = 1.210e-5 Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 1
Query: 7 DAFMVAFHE-------RWFTCTKQLQLTSLHFCVEYRNKTTVHLRVDASTPRRLLTA----AGTAPRSSDRRGSTRVPQVRARRVTWKLTSAAMLSRP-IDAFSDLKQLSF-GHCFNQAIEGVTWPASL 354
DAF +A + RW+T T +LQL SL C R+ T+H+RV TP L + A +SS R +RVP VRA R+TW + ++ R I+ +S ++L G ++ V WP L
Sbjct: 11 DAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWPLGL 139 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12587.5232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12587.5232.1 >prot_M-pyrifera_M_contig12587.5232.1 ID=prot_M-pyrifera_M_contig12587.5232.1|Name=mRNA_M-pyrifera_M_contig12587.5232.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=628bp MVAFHERWFTCTKQLQLTSLHFCVEYRNKTTVHLRVDASTPRRLLTAAGTback to top mRNA from alignment at M-pyrifera_M_contig12587:4096..6414+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12587.5232.1 ID=mRNA_M-pyrifera_M_contig12587.5232.1|Name=mRNA_M-pyrifera_M_contig12587.5232.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2319bp|location=Sequence derived from alignment at M-pyrifera_M_contig12587:4096..6414+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12587:4096..6414+ >mRNA_M-pyrifera_M_contig12587.5232.1 ID=mRNA_M-pyrifera_M_contig12587.5232.1|Name=mRNA_M-pyrifera_M_contig12587.5232.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3768bp|location=Sequence derived from alignment at M-pyrifera_M_contig12587:4096..6414+ (Macrocystis pyrifera P11B4 male)back to top |