mRNA_M-pyrifera_M_contig12582.5229.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12582.5229.1
Unique NamemRNA_M-pyrifera_M_contig12582.5229.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12582.5229.1 vs. uniprot
Match: D8LKL2_ECTSI (Tubulin-specific chaperone A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL2_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.480e-36
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 1
Query:    1 RMLKEVSGYEKEAKDNEAKVQEMRDDGKDPYDIRKQEEVLQESYMMIPDSKGRLAKVFEDLEAFLGEHAHTEGLPSDQLEEAKSLV 258
            RM+KEV+ YE EAK+NEAKVQ+MRDDGKD YDIRKQEEVLQESYMMIPDSK RLAK  ED+E FLGEHA  EGLP+DQLEEAK L+
Sbjct:   17 RMVKEVASYEVEAKENEAKVQKMRDDGKDAYDIRKQEEVLQESYMMIPDSKSRLAKALEDMEGFLGEHAGAEGLPTDQLEEAKGLL 102          
BLAST of mRNA_M-pyrifera_M_contig12582.5229.1 vs. uniprot
Match: A0A6V2H5K8_9STRA (Tubulin-specific chaperone A n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2H5K8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.270e-19
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 RMLKEVSGYEKEAKDNEAKVQEMRDDGKDPYDIRKQEEVLQESYMMIPDSKGRLAKVFEDLEAFLGEHAHTEGLPSDQLEEAKSLV 258
            R+ KE   YEKE K+NE K+ +M+ DG+DPYDI+K EEVL ESYMM+PDSK RL K  EDL  FL  +++     S+ + EAKS+V
Sbjct:   20 RLAKEAGYYEKEVKENEGKLAKMKADGRDPYDIKKFEEVLGESYMMVPDSKARLKKALEDLSLFLKNNSNVLDPESESMSEAKSIV 105          
BLAST of mRNA_M-pyrifera_M_contig12582.5229.1 vs. uniprot
Match: A0A6U3QVJ1_9STRA (Tubulin-specific chaperone A n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3QVJ1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.640e-19
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 RMLKEVSGYEKEAKDNEAKVQEMRDDGKDPYDIRKQEEVLQESYMMIPDSKGRLAKVFEDLEAFLGEHAHTEGLPSDQLEEAKSLV 258
            R+ KE   YEKE K+NE K+ +M+ DG+DPYDI+K EEVL ESYMM+PDSK RL K  EDL  FL  +++     S+ + EAKS+V
Sbjct:   24 RLAKEAGYYEKEVKENEGKLAKMKADGRDPYDIKKFEEVLGESYMMVPDSKARLKKALEDLSLFLKNNSNVLDPESESMSEAKSIV 109          
BLAST of mRNA_M-pyrifera_M_contig12582.5229.1 vs. uniprot
Match: A0A7S2W3S2_9STRA (Tubulin-specific chaperone A n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3S2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.590e-18
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 RMLKEVSGYEKEAKDNEAKVQEMRDDGKDPYDIRKQEEVLQESYMMIPDSKGRLAKVFEDLEAFLGEHAHTEGLP-SDQLEEAKSLV 258
            RM KEV+ Y +EA++NEA+VQ+ +D GKD +D++K EEVL+ESYMMIPDSK RL K  EDL  F+ EH   EG+  ++QLE A  ++
Sbjct:   25 RMAKEVAFYHREAEENEARVQKFKDAGKDIHDVKKAEEVLEESYMMIPDSKNRLQKAVEDLLVFVEEHRKEEGVAGTEQLEAALQVL 111          
BLAST of mRNA_M-pyrifera_M_contig12582.5229.1 vs. uniprot
Match: A0A8J9X6S7_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X6S7_PHATR)

HSP 1 Score: 79.0 bits (193), Expect = 1.840e-15
Identity = 38/67 (56.72%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 RMLKEVSGYEKEAKDNEAKVQEMRDDGKDPYDIRKQEEVLQESYMMIPDSKGRLAKVFEDLEAFLGE 201
            R+LKEV+ Y+KE ++NE K+Q+M+DD +DPYD++K  EVL ESYMM+PDS+ RLA+   +L  FL E
Sbjct:    1 RLLKEVNYYQKEVQENEVKLQQMKDDNRDPYDVKKFAEVLDESYMMVPDSEARLAQAVHELRDFLEE 67          
BLAST of mRNA_M-pyrifera_M_contig12582.5229.1 vs. uniprot
Match: K8Z7U7_NANGC (Tubulin-specific chaperone A n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7U7_NANGC)

HSP 1 Score: 79.3 bits (194), Expect = 5.980e-15
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 RMLKEVSGYEKEAKDNEAKVQEMRDDGKDPYDIRKQEEVLQESYMMIPDSKGRLAKVFEDLEAFLGEHAHTEGLPSDQLEEAKSLVEAS 267
            R++KE + YEKEA   E K+  MR +G+D YDI+KQEEVLQESYMMIPDSK RL    E L AFL     T+     +++E+    EA+
Sbjct:   28 RLIKEAASYEKEAAAQEQKIAGMRTEGRDTYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFL-----TQSRDVKEVQESDVYAEAN 111          
BLAST of mRNA_M-pyrifera_M_contig12582.5229.1 vs. uniprot
Match: A0A835YMR5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.590e-14
Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 RMLKEVSGYEKEAKDNEAKVQEMRDDGKDPYDIRKQEEVLQESYMMIPDSKGRLAKVFEDLEAFLGEHAHTEGLP-SDQLEEAKSLVEA 264
            R+ KEV+ YEKEA  NEAKV+ M+D+G+D +D+RK EE+L ES MMIPDSK RL    E+L   L      EG+  +D   +AK+LVEA
Sbjct:   15 RLAKEVASYEKEASTNEAKVRAMKDEGRDAHDVRKAEEILAESCMMIPDSKSRLQVAVEELAGMLAASEGEEGVKDTDDYADAKALVEA 103          
BLAST of mRNA_M-pyrifera_M_contig12582.5229.1 vs. uniprot
Match: UPI00143DD2F3 (tubulin-specific chaperone A-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143DD2F3)

HSP 1 Score: 74.3 bits (181), Expect = 3.510e-13
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 RMLKEVSGYEKEAKDNEAKVQEMRDDGKDPYDIRKQEEVLQESYMMIPDSKGRLAKVFEDLEAFLGEHAHTEGLPSDQLEEAKSLVEAS 267
            R+ KE   YEKEA+    +VQ+ +D+GKD Y+IRKQEEVLQES MM+PD + RLAK  EDL+  L      + + +  LE  K L EAS
Sbjct:   18 RLAKEKITYEKEAEQQRERVQKFKDEGKDGYEIRKQEEVLQESLMMVPDCQRRLAKAHEDLKKILETEQDLKEVEA-YLEAEKVLEEAS 105          
BLAST of mRNA_M-pyrifera_M_contig12582.5229.1 vs. uniprot
Match: A0A0K8TUG7_TABBR (Tubulin-specific chaperone A n=1 Tax=Tabanus bromius TaxID=304241 RepID=A0A0K8TUG7_TABBR)

HSP 1 Score: 73.9 bits (180), Expect = 4.190e-13
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    1 RMLKEVSGYEKEAKDNEAKVQEMRDDGKDPYDIRKQEEVLQESYMMIPDSKGRLAKVFEDLEAFLGEHAHTEGLPSDQLEEAKSLVEAS 267
            R+ KE S YEKEA+  +++V++ + DGKD +DIRKQEEVL+ES MM+PD + RLAK  E+L  FL           ++L+E K   EA+
Sbjct:   18 RLAKEKSVYEKEAETQKSRVEKYKSDGKDVHDIRKQEEVLKESLMMVPDCQRRLAKAVEELNEFLKSE--------EELKETKEYAEAT 98          
BLAST of mRNA_M-pyrifera_M_contig12582.5229.1 vs. uniprot
Match: UPI000625ACE0 (tubulin-specific chaperone A n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI000625ACE0)

HSP 1 Score: 73.9 bits (180), Expect = 5.270e-13
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 RMLKEVSGYEKEAKDNEAKVQEMRDDGKDPYDIRKQEEVLQESYMMIPDSKGRLAKVFEDLEAFLGEHAHTEGLPSDQLEEAKSLVEASTA*ASQG 288
            R+ KE   YEKEA     ++Q+++D GKD YDIRKQEEVLQES MM+PD + RL K FE+L+  L      + + +  +E  K +V+A      QG
Sbjct:   18 RLAKEKITYEKEAAQQRDRIQKLKDQGKDEYDIRKQEEVLQESLMMVPDCQRRLVKAFEELKKILESEQDLKEVEA-YVEAEKVIVDAQLQLPQQG 112          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12582.5229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKL2_ECTSI1.480e-3680.23Tubulin-specific chaperone A n=1 Tax=Ectocarpus si... [more]
A0A6V2H5K8_9STRA3.270e-1954.65Tubulin-specific chaperone A n=2 Tax=Ditylum brigh... [more]
A0A6U3QVJ1_9STRA3.640e-1954.65Tubulin-specific chaperone A n=1 Tax=Ditylum brigh... [more]
A0A7S2W3S2_9STRA2.590e-1855.17Tubulin-specific chaperone A n=1 Tax=Rhizochromuli... [more]
A0A8J9X6S7_PHATR1.840e-1556.72Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
K8Z7U7_NANGC5.980e-1550.56Tubulin-specific chaperone A n=3 Tax=Monodopsidace... [more]
A0A835YMR5_9STRA1.590e-1452.81P-loop containing nucleoside triphosphate hydrolas... [more]
UPI00143DD2F33.510e-1350.56tubulin-specific chaperone A-like n=1 Tax=Belonocn... [more]
A0A0K8TUG7_TABBR4.190e-1347.19Tubulin-specific chaperone A n=1 Tax=Tabanus bromi... [more]
UPI000625ACE05.270e-1344.79tubulin-specific chaperone A n=1 Tax=Athalia rosae... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12582contigM-pyrifera_M_contig12582:4133..5157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue1e-28
Seed eggNOG ortholog2880.D8LKL2
Preferred nameTBCA
KEGG koko:K17292
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0006457,GO:0007021,GO:0007023,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0022607,GO:0031974,GO:0031981,GO:0034622,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044183,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048487,GO:0051087,GO:0065003,GO:0070013,GO:0071840
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsKOG3470@1,KOG3470@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147,ko04812
Exons2
Model size832
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12582.5229.1prot_M-pyrifera_M_contig12582.5229.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12582 4689..5154 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.3354313-UTR-M-pyrifera_M_contig12582:4132..46881622815774.3354313-UTR-M-pyrifera_M_contig12582:4132..4688Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12582 4133..4688 -
1692277563.2144437-UTR-M-pyrifera_M_contig12582:4132..46881692277563.2144437-UTR-M-pyrifera_M_contig12582:4132..4688Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12582 4133..4688 -
1622815774.3652139-UTR-M-pyrifera_M_contig12582:5154..51571622815774.3652139-UTR-M-pyrifera_M_contig12582:5154..5157Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12582 5155..5157 -
1692277563.2690647-UTR-M-pyrifera_M_contig12582:5154..51571692277563.2690647-UTR-M-pyrifera_M_contig12582:5154..5157Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12582 5155..5157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.345866-CDS-M-pyrifera_M_contig12582:4688..48501622815774.345866-CDS-M-pyrifera_M_contig12582:4688..4850Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12582 4689..4850 -
1692277563.2353196-CDS-M-pyrifera_M_contig12582:4688..48501692277563.2353196-CDS-M-pyrifera_M_contig12582:4688..4850Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12582 4689..4850 -
1622815774.3555553-CDS-M-pyrifera_M_contig12582:5043..51541622815774.3555553-CDS-M-pyrifera_M_contig12582:5043..5154Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12582 5044..5154 -
1692277563.255218-CDS-M-pyrifera_M_contig12582:5043..51541692277563.255218-CDS-M-pyrifera_M_contig12582:5043..5154Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12582 5044..5154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12582.5229.1

>prot_M-pyrifera_M_contig12582.5229.1 ID=prot_M-pyrifera_M_contig12582.5229.1|Name=mRNA_M-pyrifera_M_contig12582.5229.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
MLKEVSGYEKEAKDNEAKVQEMRDDGKDPYDIRKQEEVLQESYMMIPDSK
GRLAKVFEDLEAFLGEHAHTEGLPSDQLEEAKSLVEASTA*
back to top

mRNA from alignment at M-pyrifera_M_contig12582:4133..5157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12582.5229.1 ID=mRNA_M-pyrifera_M_contig12582.5229.1|Name=mRNA_M-pyrifera_M_contig12582.5229.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1025bp|location=Sequence derived from alignment at M-pyrifera_M_contig12582:4133..5157- (Macrocystis pyrifera P11B4 male)
AGGATGTTGAAGGAGGTGTCCGGCTACGAGAAGGAAGCCAAGGACAACGA AGCCAAGGTGCAGGAGATGCGAGACGACGGGAAGGACCCCTACGACATCA GGAAGCAAGAGGAGGTACCATAGCAGTATTATGTACCAGTATATTAATAT GCGGTGGTTCACGAGATACGGCTTTAGGAGGCTTTCTCTGTTTTATGGCT AGCCCAGCTCGTAGCTATCACGAAGAAAACCGTTGCCAGATATGAACTAC TAGTACCAGGTACTCCATACCACTTATAACGAACGCTCTGGAACGCAACA CTGGCAGGTTCTCCAGGAGAGCTACATGATGATCCCGGACAGCAAGGGGC GGCTCGCCAAGGTTTTCGAAGACTTGGAAGCCTTTTTGGGAGAGCATGCG CACACCGAAGGCTTGCCGTCGGATCAGCTGGAGGAGGCCAAGAGCCTGGT GGAGGCAAGCACTGCCTGAGCCTCGCAAGGGTGTGTTTAGTAGTGCAAGT AGGGCATACTCTGGGGTAGCTGGGTACCAAGCCTGGTTTTGTGAATCATA CCCTTGTAACTACCCGGGTACCCGGGTGCCAAACCTGGTTGTGTGAACCA TACCTGGGTAACTATCCGAGTACCTGGATACCTAACCTCGTTATGTGAAT CATAACCGGGTAGTTACTCAGGTATCCTTCTATATGCACCCTTGGTACCT TCTGAGCTGGGGGAGGTCTACGGACGCTATCCAAGAAACACCCTGGTATG GCTATAGCGCTTTTCGCGGAGGAAATTGCAGGTGGCGGCGTCTGTTCTCA ACATCTTTGGCCCGCAGAGCTCAAGGGTGGGACCGAGCAGAGGAATACTA GACGACTATATATATATACGCACGTTTTGGATACGAAGGACTAGCATTTA GGGTTCGACACTGTTTGCGGTCCTAACATGTTGCTGTCCTACAAGGGTAA ATTAAGTCAACCAGCTTGTGCTGGGGACTGGGGTACAGGGACAAAAAGTA TGACACGTGCGATCTGATCCAATCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12582:4133..5157-

>mRNA_M-pyrifera_M_contig12582.5229.1 ID=mRNA_M-pyrifera_M_contig12582.5229.1|Name=mRNA_M-pyrifera_M_contig12582.5229.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig12582:4133..5157- (Macrocystis pyrifera P11B4 male)
ATGTTGAAGGAGGTGTCCGGCTACGAGAAGGAAGCCAAGGACAACGAAGC
CAAGGTGCAGGAGATGCGAGACGACGGGAAGGACCCCTACGACATCAGGA
AGCAAGAGGAGATGTTGAAGGAGGTGTCCGGCTACGAGAAGGAAGCCAAG
GACAACGAAGCCAAGGTGCAGGAGATGCGAGACGACGGGAAGGACCCCTA
CGACATCAGGAAGCAAGAGGAGGTTCTCCAGGAGAGCTACATGATGATCC
CGGACAGCAAGGGGCGGCTCGCCAAGGTTTTCGAAGACTTGGAAGCCTTT
TTGGGAGAGCATGCGCACACCGAAGGCTTGCCGTCGGATCAGCTGGAGGA
GGCCAAGAGCCTGGTGGAGGCAAGCACTGCCTGAGTTCTCCAGGAGAGCT
ACATGATGATCCCGGACAGCAAGGGGCGGCTCGCCAAGGTTTTCGAAGAC
TTGGAAGCCTTTTTGGGAGAGCATGCGCACACCGAAGGCTTGCCGTCGGA
TCAGCTGGAGGAGGCCAAGAGCCTGGTGGAGGCAAGCACTGCCTGA
back to top