mRNA_M-pyrifera_M_contig12579.5218.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12579.5218.1
Unique NamemRNA_M-pyrifera_M_contig12579.5218.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12579.5218.1 vs. uniprot
Match: A0A6H5L5D5_9PHAE (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5D5_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 3.850e-99
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 1
Query:    1 ETYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYSGGFARFSGTRYCTDRAELANLYVHLTNVAIQKKANDYDKEVGCKWDLRSLKMFMTLKHGARAVDELFYDIQCLVTRSLLSVQKTIIHDKHCFELYGYDVLVDEKLKPWLLEV 456
            E YIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLY+GGFARFSGTRYCTDRA LAN YVHLTNVAIQKK+ DYDKEVGCKWDL+SLKMF+TLKHGARAVDELFYD+QCL+TRSLLSVQK+IIHDKHCFELYGYDVLVD  L+PWLLEV
Sbjct:   53 EAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKSEDYDKEVGCKWDLQSLKMFLTLKHGARAVDELFYDMQCLITRSLLSVQKSIIHDKHCFELYGYDVLVDADLEPWLLEV 204          
BLAST of mRNA_M-pyrifera_M_contig12579.5218.1 vs. uniprot
Match: D8LLT6_ECTSI (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT6_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 1.500e-98
Identity = 140/152 (92.11%), Postives = 146/152 (96.05%), Query Frame = 1
Query:    1 ETYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYSGGFARFSGTRYCTDRAELANLYVHLTNVAIQKKANDYDKEVGCKWDLRSLKMFMTLKHGARAVDELFYDIQCLVTRSLLSVQKTIIHDKHCFELYGYDVLVDEKLKPWLLEV 456
            E YIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLY+GGFARFSGTRYCTDRA LAN YVHLTNVAIQKKA DYDKEVGCKWDL+SLKMF+TLKHGARAVDELFYD+QCL+TRSLLSVQK+IIHDKHCFELYGYDVLVD  LKPWLLEV
Sbjct:  173 EAYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYNGGFARFSGTRYCTDRAALANPYVHLTNVAIQKKAEDYDKEVGCKWDLQSLKMFLTLKHGARAVDELFYDMQCLITRSLLSVQKSIIHDKHCFELYGYDVLVDADLKPWLLEV 324          
BLAST of mRNA_M-pyrifera_M_contig12579.5218.1 vs. uniprot
Match: A0A6A3S929_9STRA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3S929_9STRA)

HSP 1 Score: 233 bits (594), Expect = 5.490e-73
Identity = 103/152 (67.76%), Postives = 126/152 (82.89%), Query Frame = 1
Query:    1 ETYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYSGGFARFSGTRYCTDRAELANLYVHLTNVAIQKKANDYDKEVGCKWDLRSLKMFMTLKHGARAVDELFYDIQCLVTRSLLSVQKTIIHDKHCFELYGYDVLVDEKLKPWLLEV 456
            +TYI Q+YVE+PYL+GGKKFDLRLYVLVTSF+PL+ WLY  GFARFS TRY   R ++ NL++HLTN ++Q+ A+DYD+ +GCKW L SLKMF+  KHG  AVD LF+ IQ L+TRSLL+VQ TII D+HCFELYGYDVL+D  LKPWL+EV
Sbjct:  184 DTYIVQKYVESPYLLGGKKFDLRLYVLVTSFSPLSFWLYRAGFARFSHTRYSQSRGDMDNLFMHLTNASVQRGADDYDERLGCKWPLHSLKMFLISKHGQEAVDRLFFSIQSLITRSLLAVQPTIIQDRHCFELYGYDVLIDSALKPWLIEV 335          
BLAST of mRNA_M-pyrifera_M_contig12579.5218.1 vs. uniprot
Match: A0A2P4XJA1_9STRA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJA1_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.320e-72
Identity = 102/152 (67.11%), Postives = 125/152 (82.24%), Query Frame = 1
Query:    1 ETYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYSGGFARFSGTRYCTDRAELANLYVHLTNVAIQKKANDYDKEVGCKWDLRSLKMFMTLKHGARAVDELFYDIQCLVTRSLLSVQKTIIHDKHCFELYGYDVLVDEKLKPWLLEV 456
            +TYI Q+YVE+PYL+GGKKFDLRLYVLVTSF+PLT W+Y  GFARFS  RY   + ++ NL++HLTN ++QK ANDYD  +GCKW L SLKMF+  KHG  AVD LF  IQ L+TRSLL+VQ+TII D+HCFELYGYDVL+D +LKPWL+E+
Sbjct:  178 DTYIVQKYVESPYLLGGKKFDLRLYVLVTSFSPLTFWIYRAGFARFSHARYSQSKGDMDNLFMHLTNASVQKGANDYDDSLGCKWPLHSLKMFLISKHGQEAVDRLFLAIQTLITRSLLAVQQTIIQDRHCFELYGYDVLIDSELKPWLIEI 329          
BLAST of mRNA_M-pyrifera_M_contig12579.5218.1 vs. uniprot
Match: K3WCE0_GLOUD (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCE0_GLOUD)

HSP 1 Score: 232 bits (591), Expect = 2.380e-72
Identity = 103/152 (67.76%), Postives = 121/152 (79.61%), Query Frame = 1
Query:    1 ETYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYSGGFARFSGTRYCTDRAELANLYVHLTNVAIQKKANDYDKEVGCKWDLRSLKMFMTLKHGARAVDELFYDIQCLVTRSLLSVQKTIIHDKHCFELYGYDVLVDEKLKPWLLEV 456
            ETYI Q+YVENPY IGGKKFDLRLYVLVTSF+PL  W+Y  GF RFS +RY   + ++ NL++HLTN ++QK A DYDK +GCKW L +LKMF+  KH    VD LFYDIQ L+TRSLLSVQ+ +I DKHCFELYGYDVL+D  LKPWLLEV
Sbjct:  197 ETYIVQKYVENPYTIGGKKFDLRLYVLVTSFSPLVFWIYRAGFGRFSNSRYSQSKGDIDNLFMHLTNASVQKTAEDYDKSLGCKWPLHNLKMFLIGKHDIATVDRLFYDIQMLITRSLLSVQQVVIQDKHCFELYGYDVLIDSDLKPWLLEV 348          
BLAST of mRNA_M-pyrifera_M_contig12579.5218.1 vs. uniprot
Match: A0A6G0WNG8_9STRA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNG8_9STRA)

HSP 1 Score: 231 bits (590), Expect = 3.110e-72
Identity = 101/152 (66.45%), Postives = 121/152 (79.61%), Query Frame = 1
Query:    1 ETYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYSGGFARFSGTRYCTDRAELANLYVHLTNVAIQKKANDYDKEVGCKWDLRSLKMFMTLKHGARAVDELFYDIQCLVTRSLLSVQKTIIHDKHCFELYGYDVLVDEKLKPWLLEV 456
            +TYI Q+Y+ENPY IGGKKFDLRLYVLVTSF+PL  W+Y  GF RFS  RY   +A++ NLY+HLTN ++QK A DYDK +GCKW L  +K F+  KHG RAVD LFYDIQ ++TRSLL+VQ  +I DKHCFELYGYDVL+D  LKPWL+EV
Sbjct:  191 DTYIVQKYIENPYTIGGKKFDLRLYVLVTSFSPLVFWIYRAGFGRFSNARYSHAKADMGNLYMHLTNASVQKTAQDYDKSMGCKWPLSKIKQFLISKHGVRAVDMLFYDIQSVITRSLLAVQPILIQDKHCFELYGYDVLIDSDLKPWLIEV 342          
BLAST of mRNA_M-pyrifera_M_contig12579.5218.1 vs. uniprot
Match: A0A1V9YS37_9STRA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YS37_9STRA)

HSP 1 Score: 231 bits (589), Expect = 4.390e-72
Identity = 101/152 (66.45%), Postives = 124/152 (81.58%), Query Frame = 1
Query:    1 ETYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYSGGFARFSGTRYCTDRAELANLYVHLTNVAIQKKANDYDKEVGCKWDLRSLKMFMTLKHGARAVDELFYDIQCLVTRSLLSVQKTIIHDKHCFELYGYDVLVDEKLKPWLLEV 456
            +TYI Q+Y+EN Y IGGKKFDLRLYVLVTSF+PLT W+Y GGF RFS  RY  D++ + NL++HLTN ++QK A+DYDK +GCKW L  +K FM  KHG RAVD LFYDIQ ++T+SLL+VQ  +I +KHCFELYGYDVL+D +LKPWLLEV
Sbjct:  192 DTYIVQKYIENAYTIGGKKFDLRLYVLVTSFSPLTFWIYRGGFGRFSNARYSQDKSTMDNLFMHLTNASVQKTAHDYDKTMGCKWPLSRIKQFMISKHGVRAVDTLFYDIQTVITKSLLAVQPILIQNKHCFELYGYDVLIDSQLKPWLLEV 343          
BLAST of mRNA_M-pyrifera_M_contig12579.5218.1 vs. uniprot
Match: A0A835ZCT8_9STRA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT8_9STRA)

HSP 1 Score: 229 bits (583), Expect = 8.230e-72
Identity = 103/151 (68.21%), Postives = 124/151 (82.12%), Query Frame = 1
Query:    1 ETYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYSGGFARFSGTRYCTDRAELANLYVHLTNVAIQKKANDYDKEVGCKWDLRSLKMFMTLKHGARAVDELFYDIQCLVTRSLLSVQKTIIHDKHCFELYGYDVLVDEKLKPWLLE 453
            E+YIAQRY+ NP  +GGKKFDLRLYVLVTSF+PL VWLY  GFARFSG RY  +R  + N+YVHLTNVAIQKKA  YD+ VGCK  L +LK+ +T +HGA AVDELF+D++CLV R+LLSVQ  I+ D+HCFELYG DV+VD+ LKPWL+E
Sbjct:  146 ESYIAQRYIMNPCTVGGKKFDLRLYVLVTSFSPLAVWLYGAGFARFSGQRYTQERGSMGNVYVHLTNVAIQKKAEGYDRGVGCKLALHALKLLLTARHGAAAVDELFHDMECLVVRALLSVQAAIVQDRHCFELYGLDVVVDDALKPWLIE 296          
BLAST of mRNA_M-pyrifera_M_contig12579.5218.1 vs. uniprot
Match: A0A8K1CJ20_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJ20_PYTOL)

HSP 1 Score: 230 bits (586), Expect = 9.500e-72
Identity = 102/152 (67.11%), Postives = 123/152 (80.92%), Query Frame = 1
Query:    1 ETYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYSGGFARFSGTRYCTDRAELANLYVHLTNVAIQKKANDYDKEVGCKWDLRSLKMFMTLKHGARAVDELFYDIQCLVTRSLLSVQKTIIHDKHCFELYGYDVLVDEKLKPWLLEV 456
            +TYI Q+Y+ENPY IGGKKFDLRLYVLVTSF+PLT W+Y  GF RFS  RY   + ++ NLY+HLTN ++QK A+DYD  +GCKW L+ LKMF+  KHG  AVD+LF+DIQ ++TRSL SVQ+ II DKHCFELYGYDVL+D  LKPWLLEV
Sbjct:  183 DTYIVQKYIENPYTIGGKKFDLRLYVLVTSFSPLTFWIYRAGFGRFSNARYSAHKDDIDNLYMHLTNASVQKTADDYDSSMGCKWLLQHLKMFLMSKHGRDAVDQLFHDIQMVITRSLQSVQQVIIQDKHCFELYGYDVLIDSDLKPWLLEV 334          
BLAST of mRNA_M-pyrifera_M_contig12579.5218.1 vs. uniprot
Match: W4GDH7_9STRA (Tubulin--tyrosine ligase-like protein 9 n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GDH7_9STRA)

HSP 1 Score: 231 bits (590), Expect = 9.940e-72
Identity = 102/152 (67.11%), Postives = 122/152 (80.26%), Query Frame = 1
Query:    1 ETYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYSGGFARFSGTRYCTDRAELANLYVHLTNVAIQKKANDYDKEVGCKWDLRSLKMFMTLKHGARAVDELFYDIQCLVTRSLLSVQKTIIHDKHCFELYGYDVLVDEKLKPWLLEV 456
            +TYI Q+Y+ENPY IGGKKFDLRLYVLVTSF+PL VW Y  GF RFS  RY   +A++ NLY+HLTN ++QK A DYDK +GCKW L S+K F+  KHG RAVD LF+DIQ +VT+SLL+VQ  +I DKHCFELYGYD+L+D  LKPWLLEV
Sbjct:  204 DTYIVQKYIENPYTIGGKKFDLRLYVLVTSFSPLVVWTYRAGFGRFSNARYSQAKADMDNLYMHLTNASVQKTAQDYDKSMGCKWPLDSIKQFLISKHGVRAVDSLFHDIQTVVTKSLLAVQPILIQDKHCFELYGYDILIDSDLKPWLLEV 355          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12579.5218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5D5_9PHAE3.850e-9990.79Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ec... [more]
D8LLT6_ECTSI1.500e-9892.11Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ec... [more]
A0A6A3S929_9STRA5.490e-7367.76Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ph... [more]
A0A2P4XJA1_9STRA1.320e-7267.11Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ph... [more]
K3WCE0_GLOUD2.380e-7267.76Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Gl... [more]
A0A6G0WNG8_9STRA3.110e-7266.45Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ap... [more]
A0A1V9YS37_9STRA4.390e-7266.45Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Th... [more]
A0A835ZCT8_9STRA8.230e-7268.21Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Tr... [more]
A0A8K1CJ20_PYTOL9.500e-7267.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4GDH7_9STRA9.940e-7267.11Tubulin--tyrosine ligase-like protein 9 n=4 Tax=Ap... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12579contigM-pyrifera_M_contig12579:666..4686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.5
Seed ortholog evalue1.8e-78
Seed eggNOG ortholog2880.D8LLT6
Preferred nameTTLL9
KEGG koko:K16603
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein polyglycylation
EggNOG OGsKOG2157@1,KOG2157@2759
Ec32 ortholog descriptionpredicted tubulin-tyrosin ligase
Ec32 orthologEc-02_002820.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Exons4
Model size457
Cds size456
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12579.5218.1prot_M-pyrifera_M_contig12579.5218.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12579 666..4686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.6332598-CDS-M-pyrifera_M_contig12579:665..7741622815773.6332598-CDS-M-pyrifera_M_contig12579:665..774Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12579 666..774 -
1692277562.8140616-CDS-M-pyrifera_M_contig12579:665..7741692277562.8140616-CDS-M-pyrifera_M_contig12579:665..774Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12579 666..774 -
1622815773.645906-CDS-M-pyrifera_M_contig12579:1441..15151622815773.645906-CDS-M-pyrifera_M_contig12579:1441..1515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12579 1442..1515 -
1692277562.8237104-CDS-M-pyrifera_M_contig12579:1441..15151692277562.8237104-CDS-M-pyrifera_M_contig12579:1441..1515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12579 1442..1515 -
1622815773.655845-CDS-M-pyrifera_M_contig12579:2883..30071622815773.655845-CDS-M-pyrifera_M_contig12579:2883..3007Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12579 2884..3007 -
1692277562.831903-CDS-M-pyrifera_M_contig12579:2883..30071692277562.831903-CDS-M-pyrifera_M_contig12579:2883..3007Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12579 2884..3007 -
1622815773.6746075-CDS-M-pyrifera_M_contig12579:4537..46861622815773.6746075-CDS-M-pyrifera_M_contig12579:4537..4686Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12579 4538..4686 -
1692277562.8411028-CDS-M-pyrifera_M_contig12579:4537..46861692277562.8411028-CDS-M-pyrifera_M_contig12579:4537..4686Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12579 4538..4686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12579.5218.1

>prot_M-pyrifera_M_contig12579.5218.1 ID=prot_M-pyrifera_M_contig12579.5218.1|Name=mRNA_M-pyrifera_M_contig12579.5218.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
ETYIAQRYVENPYLIGGKKFDLRLYVLVTSFNPLTVWLYSGGFARFSGTR
YCTDRAELANLYVHLTNVAIQKKANDYDKEVGCKWDLRSLKMFMTLKHGA
RAVDELFYDIQCLVTRSLLSVQKTIIHDKHCFELYGYDVLVDEKLKPWLL
EV
back to top

mRNA from alignment at M-pyrifera_M_contig12579:666..4686-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12579.5218.1 ID=mRNA_M-pyrifera_M_contig12579.5218.1|Name=mRNA_M-pyrifera_M_contig12579.5218.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4021bp|location=Sequence derived from alignment at M-pyrifera_M_contig12579:666..4686- (Macrocystis pyrifera P11B4 male)
GAGACGTACATCGCTCAGCGGTATGTGGAGAACCCCTACCTCATAGGAGG GAAGAAATTCGACCTGAGGCTATACGTTCTGGTAACCTCGTTCAACCCTC TGACGGTGTGGCTTTATAGCGGAGGCTTCGCCCGCTTTTCGGGCACAAGG TAAGCGATTTCTGGGACCCCCGCTGCATCAACCCACGTCTAGGGATGACT GCAAGCGTCCTCGCGGGCGGGGACTGGGCTTATTGCTTTTCCCCCGATAT TGCGCAGGTGGCATGATCAGACTGCCCCAGAACGCGGCAAGCAACCGCGT TCCAGTAGCGTGGAAATAAGAGCGTGTCGAGGGATGGGTCGAGTACACAC GATTTGGCGTTTTATGTAGTTGTTGTCGAGTTCGTGGCGAGAAGCAAGAG TGAAACCCATTAAATTGCTGTGAATACTGTGCTCGCGTCGGTGCCTTGTG CTTGACCGACAGCCTCATTCAATCGGTTATTTCTGAACACGAAGAGACTG CTGTGACCCTGAGACGCAACGGTGGAGACAAATACGCTAGCGCCAACTCA TCGAAACCCAAACAATACCGTTCAAAACCGAGGTAGTCTTGAAAGGCGCG ACGTCGCAGGGAACAGCGTTCTCTCACAGCCCACTTTCCCGACGGCTTCA GGAAGAGACACCGTGATTGCCAGCGGCACACCGGTAGCCAGACACCAACG AACGACACGCGAGGTGCCACAGCGGTCCGAGTTTCCAGAAGAGGTTGCAC TTCACAGCCTGCACGTTGATGGGCCCCGTGCTTGGCGTTGTTGGTGCGAT ATCAGCCACTGCACCCAGTAGCATTTCTAGGTGCTTCGTTCATGAACGAG TCTTGCACGCTTGACTGTGGTTACTGAGGTGTTGGAACAAGTCCATAAAC CTGTGGGGTTGCCGTGGTTCGCGAAGCAGATCAGCGTCTTCTCTTTCTCG AGCGCTTCGGACAAACTCAAAGTTTTTTTCTTTGTTTTGTGCTGAACTTT CGTTTGACGAACATACGATATTAGGAAGCCTCCGACCGAGCGCCGCCAAC GAGCAGGCAGTTTAAACATTTTTCTCCGGCCATGGGTTGCAAAATAGTCG CATTTCGTTCAGGGAGTCGTATGTTGTGAGTTTGGTGTTGGGTGTCCTAT TCTATACTCGTCCGTGAAGTTTTGAAACGACCCATTCGCATCTTTCAATT ACCATCTATGAGGATGTTGTTGTCCTTCAAGACGGCTATTCCGGGTGGGC TTAGGTAGTATGAATCAGAACCTAGGATGGACCCAAAAGCTATGTGTCCC CCTATGTTTAAGCACCATACTTGATTGTGCTTAGGGCCTTTTTATCGGAG AGCGTTTGTTCCAGAATTTCCAGGGTTTTCTTTTTCGCGATTTTTTCGTC GCCTTTCAGAATTTCCTGTTTTCTTTTTTCTTTTCCAAAATATGTAAAAT TTTACCTTTTCTGTTTTTTGTTCCTTCTGAAGAATTTCACCGAAGCGTGA CACAAATCCTCCGTATCTTGATACAATTTCCCATTTTTTGCAATTTTGAG AATTCTGGAAAACTAACTCTCCAAATAATAGCGGCCCTTAATATGTCCCG CCGTCATAGTAGTGACCCTTGAAGCGAAACATCGCCCTCTTCCTCGTTTT TGCTTGGATTGCTTACCCACTACTTACAGGTACTGTACCGACCGGGCAGA ACTGGCCAATCTGTATGTGCACCTGACCAACGTGGCCATCCAGAAGAAAG CCAACGACTACGACAAAGAAGTCGGCTGCAAGTGGGACCTACGAAGCCTG AAGGTAACGGGAAAACCTGCCTGCAGCTCAAGAACAAACCAAAATATTTT TTGGACAAACAAAAACTAACATGTGTTTTTTGTTTCGCGATAGTTATCGT TACTTGTTCGCGTATGTAGCTACTGTGCTGCTGTACGAAGCTCATGGGGT TGTCCATCGAATGTCGATCACGTTTCTACTCAACATCTTTTTCGGGGTGA TGCACAGAGCCCCTTGAGTCAGGAGCGTCATACTTTGTACAGTAGGTGCA CCCCGGCAGACAGTATGCGTCAAAACCAAAGGAAACGAGTCAAAAGGAAG GGTGTGGACAGGGAAACAAACCTGCGGGAGGGAGGAATGGAGACCGTGAG CGCGATTGACGAACTCGTTGTGCAATGCAGTATGGGTAGTCACGTTTTGG TGTTGGGAGTTTGCTGTATACGTATGAATATGATTAACCTAAGTTTCTAG CACCGTTCCGTGCGGTATCCACTTGGTACTCCCTCAAGCGCGATCAACCA AATAGTGCCAGTTGCTGCTGTCGAAGTGAGCTACGTACTACCGATACGTA CCCAGCCAAAGAATATGAACCGTAACGCCTATATTCTCTCTACAGCAACA AACTGCAGATTATTGTCTTATCGGTTCCCGATCCCTAATCAATATTTTCC TTCTTCTTGAATATTGTCTATGTGAGTATGTATCCCTTCTAGAACCTAGA ACACGCAACTAATAAAACAGTCGAGGTGTGCGGGCTTGTCTCAACGGTCT AATGTACGCGCGCTACAGCATGATGCGTGTAGTGCCATGCTGCACGCTTG TGTCGTACCAAATTCCTTGGTTTGTAGTTTGGAAATATTAGTCGACACGA ATATCCATCCCCTACCCTAGAGCAGCCAGCGTGTTTTTTCGTGCGGTAGA TGCCGTAATCGTGTCATTGCTTCGGCAACTTTGCCCTCTGAAGCCCCGAG AGGGACTGTTTGAGCGAACGATCGAGGTCGTCTGTGAGCTAATGCGTTTT ACGCTAGGGGGGGACAAGTTGCTGCAAGTGTTTTGGTGTGGTGTACAATC TATGCGTTGATGTAGGTATGGCGGGCGACGTTGTCTGCAAGAGCAGACCG TCGGCAGGAGGGACATCGAGATCCCGTGCCCAAATGGTGTTGAGCCGCCA CCGCCCCACGCATGTCTGTTATTTCGTAGGATCTACCGCTGATGTTCGGA GCCAGCTCTTTTTCGAAAGGTGGGGCAGTAGACTTACTTACAGTTTTACA TCTGCTGGGCGTCTATTGATGGAAATACCGGTTTGGTGTGAAGAGCGCAT GCACACACATACTCACGCACGCTCAAGTCGCTCTGCTCTTCGCCCATTTT CCCACCCCCCGCGCGTTGCAGATGTTCATGACTCTGAAGCACGGCGCGCG TGCCGTGGACGAACTGTTCTACGACATCCAGTGCCTCGTCACAAGGTGGA ATGCTCAAGAACGATCCTCGGTCGAGCTACTCGAAGCTTCCGAAACGTAC ATCCAGCCTAGACTACCTTATCACACGTGTCATAGGATGACACAACCCGT GGGACTTCAGAGCCGATTCTCTCCCCGCCATGGGGGGTACACACGATGAG AATGGTGGCTTTGGGAAGATGTCGTCGAAATATTTTTAGCAAGACGCGTC GCTCGGCGTACCCAGTACGCCCTCCCCGTTGTCGAGAAGAGCATCTTCGA ACTTAGTCCGAGAGGAGGGTATGTGTCTTGAGTGTTGTATATACCAGGTA CACGGAAGTTGTATGTTGCCGCGATCCTGGTTGCTTGAGTCTGTTCAGAA ATATCTGGTACGAAGGTAGGCAGCAGCAGCCTATTGTCGTGACCAGTGTC AGTGGCGATTGCAGTTCAGCAGCCTATCTAGTCAACGCTCAGTAGCATGG AGCACGTACTGCTGTATGCGGTATGTCCATTTCTGAGATGCTCCGATTTG TTTTGCACTTTCACCTTTGTAGAAACGACTCCGAGCACGCTCCGAAGAAG ATTTGTTTTGTTTTGTTTTGCGCTCCACCCTCGATTAACGGTATACCCGT CGGGATGCGATGCGATGCGCTTGTTCGTATTTTTCTGCTGTCGCCTCTAA TTTCCTTGGCAGATCATTGCTGTCAGTGCAGAAGACTATAATCCACGACA AGCACTGCTTCGAGCTATACGGCTACGACGTCCTCGTCGACGAGAAGCTT AAGCCGTGGTTGCTCGAGGTA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12579:666..4686-

>mRNA_M-pyrifera_M_contig12579.5218.1 ID=mRNA_M-pyrifera_M_contig12579.5218.1|Name=mRNA_M-pyrifera_M_contig12579.5218.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig12579:666..4686- (Macrocystis pyrifera P11B4 male)
GAGACGTACATCGCTCAGCGGTATGTGGAGAACCCCTACCTCATAGGAGG
GAAGAAATTCGACCTGAGGCTATACGTTCTGGTAACCTCGTTCAACCCTC
TGACGGTGTGGCTTTATAGCGGAGGCTTCGCCCGCTTTTCGGGCACAAGG
AGACGTACATCGCTCAGCGGTATGTGGAGAACCCCTACCTCATAGGAGGG
AAGAAATTCGACCTGAGGCTATACGTTCTGGTAACCTCGTTCAACCCTCT
GACGGTGTGGCTTTATAGCGGAGGCTTCGCCCGCTTTTCGGGCACAAGGT
ACTGTACCGACCGGGCAGAACTGGCCAATCTGTATGTGCACCTGACCAAC
GTGGCCATCCAGAAGAAAGCCAACGACTACGACAAAGAAGTCGGCTGCAA
GTGGGACCTACGAAGCCTGAAGGTACTGTACCGACCGGGCAGAACTGGCC
AATCTGTATGTGCACCTGACCAACGTGGCCATCCAGAAGAAAGCCAACGA
CTACGACAAAGAAGTCGGCTGCAAGTGGGACCTACGAAGCCTGAAGATGT
TCATGACTCTGAAGCACGGCGCGCGTGCCGTGGACGAACTGTTCTACGAC
ATCCAGTGCCTCGTCACAAGATGTTCATGACTCTGAAGCACGGCGCGCGT
GCCGTGGACGAACTGTTCTACGACATCCAGTGCCTCGTCACAAGATCATT
GCTGTCAGTGCAGAAGACTATAATCCACGACAAGCACTGCTTCGAGCTAT
ACGGCTACGACGTCCTCGTCGACGAGAAGCTTAAGCCGTGGTTGCTCGAG
GTAATCATTGCTGTCAGTGCAGAAGACTATAATCCACGACAAGCACTGCT
TCGAGCTATACGGCTACGACGTCCTCGTCGACGAGAAGCTTAAGCCGTGG
TTGCTCGAGGTA
back to top