mRNA_M-pyrifera_M_contig125770.5210.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125770.5210.1
Unique NamemRNA_M-pyrifera_M_contig125770.5210.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125770.5210.1 vs. uniprot
Match: A9USI8_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9USI8_MONBE)

HSP 1 Score: 67.4 bits (163), Expect = 6.620e-11
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:    1 VPKCADGSENFWVCVITADSAHEGGPGEHMLVLRSKD-GKDWSSMTPLRLEP-GTNLTNAYGILAKSPSSSRLFAIYNMNVDDVTHLPSGTALGRTDELGYFVMR 309
            V + ++GS   W+C +T +   EG  GEH+  L + + G +W+    L  E    N+  AY     S  + R++ + N N+D+VT LP G+ LGRTDELGYFV R
Sbjct:   82 VGRSSNGSSR-WLCSVTLNDRPEGSAGEHVATLYTDNQGLNWTEPHVLYPELLAQNIDTAYSANILS-HAGRVYVLNNANLDNVTTLPDGSPLGRTDELGYFVFR 184
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BLAST of mRNA_M-pyrifera_M_contig125770.5210.1 vs. uniprot
Match: A0A1G9JQW0_9BACT (BNR repeat-like domain-containing protein n=2 Tax=Siphonobacter aquaeclarae TaxID=563176 RepID=A0A1G9JQW0_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 5.860e-5
Identity = 32/93 (34.41%), Postives = 47/93 (50.54%), Query Frame = 1 
Query:   34 WVCVITADSAHEGGPGEHMLVLRSKD-GKDWSSMTPLRLEPGTNLTNAYGILAKSPSSSRLFAIYNMNVDDVTHLPSGTALGRTDELGYFVMR 309
            W CV T     EG  G+H++   S D GK WS    + +EP T    ++ I   +P   R++A Y+ N D+VTHL       R D LG++  +
Sbjct:   57 WFCVFTTGKGIEGAGGQHIVCSTSSDHGKTWSDT--IAIEPSTGPAASWVIPYLTPYG-RIYAFYDYNGDNVTHLNEKPI--RNDMLGWYCFK 144
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125770.5210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A9USI8_MONBE6.620e-1139.05Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A1G9JQW0_9BACT5.860e-534.41BNR repeat-like domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125770contigM-pyrifera_M_contig125770:201..509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue4.6e-14
Seed eggNOG ortholog44056.XP_009035303.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMQK@1,2QRFD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.3446474-CDS-M-pyrifera_M_contig125770:200..5091622815773.3446474-CDS-M-pyrifera_M_contig125770:200..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125770 201..509 +
1692277562.6835377-CDS-M-pyrifera_M_contig125770:200..5091692277562.6835377-CDS-M-pyrifera_M_contig125770:200..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125770 201..509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125770.5210.1prot_M-pyrifera_M_contig125770.5210.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125770 201..509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125770.5210.1

>prot_M-pyrifera_M_contig125770.5210.1 ID=prot_M-pyrifera_M_contig125770.5210.1|Name=mRNA_M-pyrifera_M_contig125770.5210.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
VPKCADGSENFWVCVITADSAHEGGPGEHMLVLRSKDGKDWSSMTPLRLE
PGTNLTNAYGILAKSPSSSRLFAIYNMNVDDVTHLPSGTALGRTDELGYF
VMR
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mRNA from alignment at M-pyrifera_M_contig125770:201..509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125770.5210.1 ID=mRNA_M-pyrifera_M_contig125770.5210.1|Name=mRNA_M-pyrifera_M_contig125770.5210.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig125770:201..509+ (Macrocystis pyrifera P11B4 male)
GTCCCAAAATGTGCTGATGGAAGCGAGAATTTCTGGGTTTGCGTGATTAC
AGCCGATTCAGCGCACGAGGGGGGTCCAGGAGAGCACATGTTAGTTCTTA
GGAGTAAGGATGGGAAGGATTGGAGTTCAATGACACCATTGCGATTGGAG
CCAGGGACGAATTTAACGAATGCGTACGGGATTTTAGCAAAGAGTCCATC
ATCTTCTCGATTGTTTGCTATTTACAACATGAATGTGGATGATGTTACAC
ATTTACCAAGTGGTACAGCGCTGGGGCGCACAGATGAGCTTGGGTACTTT
GTGATGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125770:201..509+

>mRNA_M-pyrifera_M_contig125770.5210.1 ID=mRNA_M-pyrifera_M_contig125770.5210.1|Name=mRNA_M-pyrifera_M_contig125770.5210.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig125770:201..509+ (Macrocystis pyrifera P11B4 male)
GTCCCAAAATGTGCTGATGGAAGCGAGAATTTCTGGGTTTGCGTGATTAC
AGCCGATTCAGCGCACGAGGGGGGTCCAGGAGAGCACATGTTAGTTCTTA
GGAGTAAGGATGGGAAGGATTGGAGTTCAATGACACCATTGCGATTGGAG
CCAGGGACGAATTTAACGAATGCGTACGGGATTTTAGCAAAGAGTCCATC
ATCTTCTCGATTGTTTGCTATTTACAACATGAATGTGGATGATGTTACAC
ATTTACCAAGTGGTACAGCGCTGGGGCGCACAGATGAGCTTGGGTACTTT
GTGATGAGGGTCCCAAAATGTGCTGATGGAAGCGAGAATTTCTGGGTTTG
CGTGATTACAGCCGATTCAGCGCACGAGGGGGGTCCAGGAGAGCACATGT
TAGTTCTTAGGAGTAAGGATGGGAAGGATTGGAGTTCAATGACACCATTG
CGATTGGAGCCAGGGACGAATTTAACGAATGCGTACGGGATTTTAGCAAA
GAGTCCATCATCTTCTCGATTGTTTGCTATTTACAACATGAATGTGGATG
ATGTTACACATTTACCAAGTGGTACAGCGCTGGGGCGCACAGATGAGCTT
GGGTACTTTGTGATGAGG
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