mRNA_M-pyrifera_M_contig125755.5205.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125755.5205.1
Unique NamemRNA_M-pyrifera_M_contig125755.5205.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125755.5205.1 vs. uniprot
Match: A0A2E7WVP6_9GAMM (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2E7WVP6_9GAMM)

HSP 1 Score: 237 bits (605), Expect = 1.570e-69
Identity = 110/125 (88.00%), Postives = 117/125 (93.60%), Query Frame = 1 
Query:  127 MARSGVVDGCHLDYEMVVSGFSELGDQICYCDDCFEKYAQQIGSSEQVVRDGRYEWLHKQERLRDYLAHQRDRLSALYRKGAERVWAIKPDFVFGAYPGFMPGDLENSWRFEGVALGLHSPSAPF 501
            MARSGVVDGCHLDYEMVVSGFSELGD ICYCDDCF KYAQQ GSSEQVVRD RYEWL +Q RLR+YLAHQRDRLSA+YR+GAERVWAIKPDFVFGAYPGFMPG+ E+ WRFEGVALGLHSP+APF
Sbjct:    1 MARSGVVDGCHLDYEMVVSGFSELGDDICYCDDCFGKYAQQTGSSEQVVRDRRYEWLQEQGRLRNYLAHQRDRLSAVYRRGAERVWAIKPDFVFGAYPGFMPGEFEDFWRFEGVALGLHSPTAPF 125
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125755.5205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E7WVP6_9GAMM1.570e-6988.00Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125755contigM-pyrifera_M_contig125755:12..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.1423013-CDS-M-pyrifera_M_contig125755:11..5121622815773.1423013-CDS-M-pyrifera_M_contig125755:11..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125755 12..512 +
1692277562.6045442-CDS-M-pyrifera_M_contig125755:11..5121692277562.6045442-CDS-M-pyrifera_M_contig125755:11..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125755 12..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125755.5205.1prot_M-pyrifera_M_contig125755.5205.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125755 12..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125755.5205.1

>prot_M-pyrifera_M_contig125755.5205.1 ID=prot_M-pyrifera_M_contig125755.5205.1|Name=mRNA_M-pyrifera_M_contig125755.5205.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
ARLAVNQEGKTSKQWPAAQGEYAPCPLEEKALDEWLFKPALDMARSGVVD
GCHLDYEMVVSGFSELGDQICYCDDCFEKYAQQIGSSEQVVRDGRYEWLH
KQERLRDYLAHQRDRLSALYRKGAERVWAIKPDFVFGAYPGFMPGDLENS
WRFEGVALGLHSPSAPF
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mRNA from alignment at M-pyrifera_M_contig125755:12..512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125755.5205.1 ID=mRNA_M-pyrifera_M_contig125755.5205.1|Name=mRNA_M-pyrifera_M_contig125755.5205.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig125755:12..512+ (Macrocystis pyrifera P11B4 male)
GCACGCCTGGCCGTCAATCAGGAGGGTAAGACTTCGAAGCAATGGCCGGC
TGCACAAGGGGAGTATGCACCTTGCCCCTTGGAAGAGAAGGCACTGGACG
AATGGCTGTTTAAGCCTGCACTTGATATGGCACGCTCCGGAGTGGTTGAC
GGCTGTCATCTGGATTATGAGATGGTCGTATCGGGATTCAGCGAACTGGG
CGATCAGATATGTTACTGCGACGATTGCTTCGAAAAATACGCGCAGCAGA
TTGGCTCAAGCGAGCAGGTCGTGCGCGATGGCCGATACGAGTGGCTGCAC
AAGCAAGAACGGCTCAGGGATTATTTGGCTCATCAGCGAGACCGGCTGAG
TGCCCTGTACCGCAAGGGCGCCGAGCGCGTGTGGGCAATCAAGCCAGACT
TCGTATTCGGGGCTTATCCGGGCTTCATGCCCGGTGACCTCGAGAATTCC
TGGAGGTTTGAGGGCGTGGCGCTCGGCCTGCACTCCCCCTCGGCACCCTT
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125755:12..512+

>mRNA_M-pyrifera_M_contig125755.5205.1 ID=mRNA_M-pyrifera_M_contig125755.5205.1|Name=mRNA_M-pyrifera_M_contig125755.5205.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig125755:12..512+ (Macrocystis pyrifera P11B4 male)
GCACGCCTGGCCGTCAATCAGGAGGGTAAGACTTCGAAGCAATGGCCGGC
TGCACAAGGGGAGTATGCACCTTGCCCCTTGGAAGAGAAGGCACTGGACG
AATGGCTGTTTAAGCCTGCACTTGATATGGCACGCTCCGGAGTGGTTGAC
GGCTGTCATCTGGATTATGAGATGGTCGTATCGGGATTCAGCGAACTGGG
CGATCAGATATGTTACTGCGACGATTGCTTCGAAAAATACGCGCAGCAGA
TTGGCTCAAGCGAGCAGGTCGTGCGCGATGGCCGATACGAGTGGCTGCAC
AAGCAAGAACGGCTCAGGGATTATTTGGCTCATCAGCGAGACCGGCTGAG
TGCCCTGTACCGCAAGGGCGCCGAGCGCGTGTGGGCAATCAAGCCAGACT
TCGTATTCGGGGCTTATCCGGGCTTCATGCCCGGTGACCTCGAGAATTCC
TGGAGGTTTGAGGGCGTGGCGCTCGGCCTGCACTCCCCCTCGGCACCCTT
CGCACGCCTGGCCGTCAATCAGGAGGGTAAGACTTCGAAGCAATGGCCGG
CTGCACAAGGGGAGTATGCACCTTGCCCCTTGGAAGAGAAGGCACTGGAC
GAATGGCTGTTTAAGCCTGCACTTGATATGGCACGCTCCGGAGTGGTTGA
CGGCTGTCATCTGGATTATGAGATGGTCGTATCGGGATTCAGCGAACTGG
GCGATCAGATATGTTACTGCGACGATTGCTTCGAAAAATACGCGCAGCAG
ATTGGCTCAAGCGAGCAGGTCGTGCGCGATGGCCGATACGAGTGGCTGCA
CAAGCAAGAACGGCTCAGGGATTATTTGGCTCATCAGCGAGACCGGCTGA
GTGCCCTGTACCGCAAGGGCGCCGAGCGCGTGTGGGCAATCAAGCCAGAC
TTCGTATTCGGGGCTTATCCGGGCTTCATGCCCGGTGACCTCGAGAATTC
CTGGAGGTTTGAGGGCGTGGCGCTCGGCCTGCACTCCCCCTCGGCACCCT
TC
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