mRNA_M-pyrifera_M_contig125753.5204.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A7S4M9B2_9EUKA (Arginine--tRNA ligase n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M9B2_9EUKA) HSP 1 Score: 137 bits (345), Expect = 6.490e-35 Identity = 71/141 (50.35%), Postives = 96/141 (68.09%), Query Frame = 1
Query: 1 PGMILSRDLAKADLSMQFKGLCARAKKKDAVAYTEALATALRAHIAAPEAPCKLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQH 423
P + +RD + D ++ KG CAR +K D V Y+ L AL A + E P LRD +A NG++N+F+NR ++F V LG +YG S++ GQ++IIEHTS+NPNGPLHIGNLRN ++GAHL+KL AVGYEV+QH
Sbjct: 40 PPIAKTRDSSNGDFTVILKGACAR-RKIDVVKYSNELTEALNAFL--KENPKSYLRDSNAMNGYVNLFVNRSSIFEDTIKTVLGLGEKYGSSDKMAGQKVIIEHTSSNPNGPLHIGNLRNVMLGAHLSKLFEAVGYEVKQH 177
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A7S0R1X4_9CHLO (Arginyl-tRNA synthetase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R1X4_9CHLO) HSP 1 Score: 124 bits (311), Expect = 1.890e-32 Identity = 65/141 (46.10%), Postives = 95/141 (67.38%), Query Frame = 1
Query: 1 PGMILSRDLAKADLSMQFKGLCARAKKKDAVAYTEALATALRAHIAAPEAPCKLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQH 423
P + SRDL KADL+M + +CA+ +K + +T LA + ++A A L+ V+ +LNVFLNR F AV +LG+++GH ++ G++++IEHTSANPN PLHIGNLRN ++GAHLA ++ AVGY+V+QH
Sbjct: 39 PNIQRSRDLEKADLTMLWAPVCAK-RKMNPAKFTAELADFINEKLSA-NADGLLVSKVAGVGPYLNVFLNRGETFRLTVRAVLKLGAKFGHVDQNAGKKVVIEHTSANPNAPLHIGNLRNVMIGAHLANIMKAVGYDVKQH 177
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A7S0SHG2_9CHLO (Arginine--tRNA ligase n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SHG2_9CHLO) HSP 1 Score: 122 bits (305), Expect = 1.810e-29 Identity = 67/140 (47.86%), Postives = 92/140 (65.71%), Query Frame = 1
Query: 1 PGMILSRDLAKADLSMQFKGLCARAKKKDAVAYTEALATALRAHIAAPEAPCKLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQ 420
P + SRDLAKAD ++Q+ A+ +K + VAY LA L+A I +P L+ VS +LN+F++R VF A AV G+ +GH+ G+R+IIEHTS+NPN PLHIGNLRN ++GAHLAK+ AA G+ V+Q
Sbjct: 39 PQVTRSRDLAKADFTVQWSAFAAK-RKLNPVAYVTELAAGLQARIDG-SSPRGLITRVSGVGPYLNLFVDRARVFRLALRAVAHAGNTFGHTNAAGGKRVIIEHTSSNPNAPLHIGNLRNVMIGAHLAKMQAACGFSVKQ 176
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A7S2T8X7_9CHLO (Arginine--tRNA ligase n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T8X7_9CHLO) HSP 1 Score: 119 bits (299), Expect = 1.190e-28 Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 1
Query: 7 MILSRDLAKADLSMQFKGLCARAKKKDAVAYTEALATALRAHIA---APEAPCKLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQH 423
M +SR L + D ++Q LCARAK V +A+A AL+A +A A EA +L++ V+A +LNV LNR V+ AV G+ YG ++ KG+R+I+EHTS+NPN PLHIGNLRN ++GAH A+L+ +VG EV+QH
Sbjct: 55 MEMSRRLDQGDFAVQLAPLCARAKTNP-VQGAKAIAEALQASLASLSATEAATRLVKGVAAAGPYLNVSLNRPLVYKRVVEAVASRGAEYGVTDLWKGKRVIVEHTSSNPNAPLHIGNLRNVMIGAHAARLIQSVGAEVKQH 195
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: K8EIQ7_9CHLO (Arginine--tRNA ligase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EIQ7_9CHLO) HSP 1 Score: 109 bits (272), Expect = 5.180e-25 Identity = 55/140 (39.29%), Postives = 89/140 (63.57%), Query Frame = 1
Query: 1 PGMILSRDLAKADLSMQFKGLCARAKKKDAVAYTEALATALRAHIAAPEAPCKLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQ 420
P + +RDL+KAD ++Q+ CA+ +K + Y + L+ ++ I ++ V ++N+F+ RQ VF A +A+ G++YG + +G+++IIEHTS+NPN PLHIGNLRN ++GAHLA+++ A G EV Q
Sbjct: 25 PELSRTRDLSKADFTVQWSRFCAK-RKLNPAEYVKNLSETIQKQIEDGAHQDGFIKSVQGVGPYMNIFVKRQKVFKLAINAIIEQGTKYGCTNAGQGKKVIIEHTSSNPNAPLHIGNLRNVMIGAHLARVMQACGCEVTQ 163
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A5B8N0V1_9CHLO (Arginine--tRNA ligase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0V1_9CHLO) HSP 1 Score: 108 bits (270), Expect = 9.750e-25 Identity = 57/139 (41.01%), Postives = 90/139 (64.75%), Query Frame = 1
Query: 16 SRDLAKADLSMQFKGLCARAKKKD---AVAYTEALATALRAHIAAPEAPCKLLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQH 423
SR L + D+++Q +CAR K A +E + T L + ++A E KL++ V+ +LN+FL+R ++ V +G+RYG +E KG+R+++EHTS+NPN PLHIGNLRN ++GAH A+L+ + G +V+QH
Sbjct: 61 SRRLDQGDIAVQLAPVCARVKTNPVHGAKVISEFIMTHLNS-LSADERKGKLVQKVACAGPYLNIFLSRPMMYKRVVEQVLEMGARYGFTEAWKGKRVLVEHTSSNPNAPLHIGNLRNVMIGAHTARLIESAGADVKQH 198
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A7R9WC40_9CHLO (Arginyl-tRNA synthetase (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7R9WC40_9CHLO) HSP 1 Score: 94.7 bits (234), Expect = 1.260e-20 Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 1
Query: 175 SAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQ 420
+A +LN+ LNR VF A +V G +GH++ KG+R+IIEHTS+NPN PLHIGNLRN ++GAHLA+L+ A G++ ++
Sbjct: 98 AAAGVYLNMSLNRPKVFEMALRSVASQGETFGHTDAAKGKRVIIEHTSSNPNAPLHIGNLRNVMIGAHLARLMKACGHDAKE 179
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: C1E9E9_MICCC (Arginyl-tRNA synthetase (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E9E9_MICCC) HSP 1 Score: 96.3 bits (238), Expect = 1.480e-20 Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 160 LLRDVSAENGFLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQ 420
L+ V +LN+F++R VF AV G ++GH++ G+R+IIEHTS+NPN PLHIGNLRN ++GAHLAK+ AA G+ V+Q
Sbjct: 1 LITKVQGVGPYLNLFVDRARVFRLVIRAVSAQGDKFGHTKAAGGKRVIIEHTSSNPNAPLHIGNLRNVMIGAHLAKMQAACGFAVKQ 87
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A4S1B0_OSTLU (Arginine--tRNA ligase n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S1B0_OSTLU) HSP 1 Score: 96.3 bits (238), Expect = 1.950e-20 Identity = 40/77 (51.95%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 190 FLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQ 420
++N+ +NR VF A AV R G ++GH++ KG+R+IIEHTS+NPN PLHIGNLRN ++GAHL++++ A G++V++
Sbjct: 36 YVNLKMNRPMVFEATMKAVARRGGKFGHTDAAKGKRVIIEHTSSNPNAPLHIGNLRNVMIGAHLSRMMKACGHDVKE 112
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Match: A0A1Y5IBF2_OSTTA (Arginine--tRNA ligase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IBF2_OSTTA) HSP 1 Score: 95.1 bits (235), Expect = 5.030e-20 Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 190 FLNVFLNRQNVFSAAFSAVERLGSRYGHSEEKKGQRLIIEHTSANPNGPLHIGNLRNSLVGAHLAKLLAAVGYEVRQ 420
+ N+ LNR VF A + + G+ +GH+ KG+R+IIEHTS+NPN PLHIGNLRN ++GAHLAKL+ A G+EV++
Sbjct: 107 YANMTLNRPMVFEAVMKSAAKQGATFGHTNAAKGKRVIIEHTSSNPNAPLHIGNLRNVMIGAHLAKLMKACGHEVQE 183 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125753.5204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig125753.5204.1 >prot_M-pyrifera_M_contig125753.5204.1 ID=prot_M-pyrifera_M_contig125753.5204.1|Name=mRNA_M-pyrifera_M_contig125753.5204.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp MILSRDLAKADLSMQFKGLCARAKKKDAVAYTEALATALRAHIAAPEAPCback to top mRNA from alignment at M-pyrifera_M_contig125753:91..513+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig125753.5204.1 ID=mRNA_M-pyrifera_M_contig125753.5204.1|Name=mRNA_M-pyrifera_M_contig125753.5204.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig125753:91..513+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig125753:91..513+ >mRNA_M-pyrifera_M_contig125753.5204.1 ID=mRNA_M-pyrifera_M_contig125753.5204.1|Name=mRNA_M-pyrifera_M_contig125753.5204.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig125753:91..513+ (Macrocystis pyrifera P11B4 male)back to top |