mRNA_M-pyrifera_M_contig125750.5203.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125750.5203.1
Unique NamemRNA_M-pyrifera_M_contig125750.5203.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125750.5203.1 vs. uniprot
Match: K3X913_GLOUD (PDCD2_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X913_GLOUD)

HSP 1 Score: 54.7 bits (130), Expect = 1.300e-7
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    4 AQLYAPVDCDRVVYLFGCNSAACSSTPAGWSAVRQQ 111
            AQ+YAPVD DR +Y+FGCNS  C+ TP  W A+R Q
Sbjct:   64 AQVYAPVDTDRTLYIFGCNSVDCTETPGSWRALRDQ 99
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BLAST of mRNA_M-pyrifera_M_contig125750.5203.1 vs. uniprot
Match: G4ZIH7_PHYSP (PDCD2_C domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZIH7_PHYSP)

HSP 1 Score: 53.5 bits (127), Expect = 3.390e-7
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    4 AQLYAPVDCDRVVYLFGCNSAACSSTPAGWSAVRQQ 111
            AQ+YAPV+ DR +Y+FGCNS AC+ TP  W  +R Q
Sbjct:   58 AQVYAPVETDRTLYVFGCNSVACTETPGSWRVLRDQ 93
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BLAST of mRNA_M-pyrifera_M_contig125750.5203.1 vs. uniprot
Match: A0A6A3K6R3_9STRA (PDCD2_C domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3K6R3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.640e-7
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    4 AQLYAPVDCDRVVYLFGCNSAACSSTPAGWSAVRQQ 111
            AQLYAPV+ DR +Y+FGCNS AC+ +P  W  +R Q
Sbjct:   58 AQLYAPVETDRTLYVFGCNSVACTESPGSWRVLRDQ 93
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BLAST of mRNA_M-pyrifera_M_contig125750.5203.1 vs. uniprot
Match: A0A329ST28_9STRA (PDCD2_C domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329ST28_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.620e-6
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    4 AQLYAPVDCDRVVYLFGCNSAACSSTPAGWSAVRQQ 111
            AQ+YAPV+ DR +Y+FGCNS AC+  P  W  +R Q
Sbjct:   58 AQVYAPVETDRTLYVFGCNSVACTENPGSWRVLRDQ 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig125750.5203.1 vs. uniprot
Match: A0A225WID1_9STRA (PDCD2_C domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WID1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.620e-6
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    4 AQLYAPVDCDRVVYLFGCNSAACSSTPAGWSAVRQQ 111
            AQ+YAPV+ DR +Y+FGCNS AC+  P  W  +R Q
Sbjct:   58 AQVYAPVETDRTLYVFGCNSVACTENPGSWRVLRDQ 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig125750.5203.1 vs. uniprot
Match: A0A2P4YBS7_9STRA (PDCD2_C domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YBS7_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.620e-6
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    4 AQLYAPVDCDRVVYLFGCNSAACSSTPAGWSAVRQQ 111
            AQ+YAPV+ DR +Y+FGCNS AC+  P  W  +R Q
Sbjct:   58 AQVYAPVEMDRTLYVFGCNSVACTENPGSWRVLRDQ 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig125750.5203.1 vs. uniprot
Match: A0A3F2REX1_9STRA (PDCD2_C domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2REX1_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.210e-6
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    4 AQLYAPVDCDRVVYLFGCNSAACSSTPAGWSAVRQQ 111
            AQ+YAPV  DR +Y+FGCNS AC+ +P  W  +R Q
Sbjct:   58 AQVYAPVSSDRTLYVFGCNSVACTKSPGSWRVLRDQ 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig125750.5203.1 vs. uniprot
Match: A0A3R7KFQ9_9STRA (PDCD2_C domain-containing protein (Fragment) n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KFQ9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.210e-6
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    4 AQLYAPVDCDRVVYLFGCNSAACSSTPAGWSAVRQQ 111
            AQ+YAPV  DR +Y+FGCNS AC+ +P  W  +R Q
Sbjct:   58 AQVYAPVSSDRTLYVFGCNSVACTKSPGSWRVLRDQ 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig125750.5203.1 vs. uniprot
Match: A0A0P1B0E5_PLAHL (Uncharacterized MYND Zn-finger protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0E5_PLAHL)

HSP 1 Score: 51.2 bits (121), Expect = 2.220e-6
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    4 AQLYAPVDCDRVVYLFGCNSAACSSTPAGWSAVRQQ 111
            AQ+YAPV+ DR +Y+FGCNS AC+  P  W  +R Q
Sbjct:   58 AQVYAPVEMDRTLYVFGCNSKACTENPGSWRVLRDQ 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig125750.5203.1 vs. uniprot
Match: A0A1V9ZKR8_9STRA (PDCD2_C domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKR8_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 5.690e-6
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    4 AQLYAPVDCDRVVYLFGCNSAACSSTPAGWSAVRQQ 111
            AQ+YAPV  DR +Y+FGCNS  C++TP  W A+R +
Sbjct:   59 AQVYAPVTTDRTLYIFGCNSIKCTTTPNSWRALRYE 94
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125750.5203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
K3X913_GLOUD1.300e-761.11PDCD2_C domain-containing protein n=1 Tax=Globispo... [more]
G4ZIH7_PHYSP3.390e-758.33PDCD2_C domain-containing protein n=1 Tax=Phytopht... [more]
A0A6A3K6R3_9STRA4.640e-758.33PDCD2_C domain-containing protein n=4 Tax=Phytopht... [more]
A0A329ST28_9STRA1.620e-655.56PDCD2_C domain-containing protein n=2 Tax=Phytopht... [more]
A0A225WID1_9STRA1.620e-655.56PDCD2_C domain-containing protein n=1 Tax=Phytopht... [more]
A0A2P4YBS7_9STRA1.620e-655.56PDCD2_C domain-containing protein n=1 Tax=Phytopht... [more]
A0A3F2REX1_9STRA2.210e-655.56PDCD2_C domain-containing protein n=1 Tax=Phytopht... [more]
A0A3R7KFQ9_9STRA2.210e-655.56PDCD2_C domain-containing protein (Fragment) n=2 T... [more]
A0A0P1B0E5_PLAHL2.220e-655.56Uncharacterized MYND Zn-finger protein n=1 Tax=Pla... [more]
A0A1V9ZKR8_9STRA5.690e-655.56PDCD2_C domain-containing protein n=1 Tax=Achlya h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125750contigM-pyrifera_M_contig125750:275..385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.060336-CDS-M-pyrifera_M_contig125750:274..3851622815773.060336-CDS-M-pyrifera_M_contig125750:274..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125750 275..385 -
1692277562.5677848-CDS-M-pyrifera_M_contig125750:274..3851692277562.5677848-CDS-M-pyrifera_M_contig125750:274..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125750 275..385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125750.5203.1prot_M-pyrifera_M_contig125750.5203.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125750 275..385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125750.5203.1

>prot_M-pyrifera_M_contig125750.5203.1 ID=prot_M-pyrifera_M_contig125750.5203.1|Name=mRNA_M-pyrifera_M_contig125750.5203.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=37bp
FAQLYAPVDCDRVVYLFGCNSAACSSTPAGWSAVRQQ
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mRNA from alignment at M-pyrifera_M_contig125750:275..385-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125750.5203.1 ID=mRNA_M-pyrifera_M_contig125750.5203.1|Name=mRNA_M-pyrifera_M_contig125750.5203.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=111bp|location=Sequence derived from alignment at M-pyrifera_M_contig125750:275..385- (Macrocystis pyrifera P11B4 male)
TTCGCGCAGCTGTACGCTCCCGTCGATTGCGACAGGGTGGTGTACCTGTT
CGGCTGCAACTCTGCAGCGTGCAGCTCCACCCCTGCCGGCTGGTCTGCTG
TGAGGCAGCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125750:275..385-

>mRNA_M-pyrifera_M_contig125750.5203.1 ID=mRNA_M-pyrifera_M_contig125750.5203.1|Name=mRNA_M-pyrifera_M_contig125750.5203.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig125750:275..385- (Macrocystis pyrifera P11B4 male)
TTCGCGCAGCTGTACGCTCCCGTCGATTGCGACAGGGTGGTGTACCTGTT
CGGCTGCAACTCTGCAGCGTGCAGCTCCACCCCTGCCGGCTGGTCTGCTG
TGAGGCAGCAATTCGCGCAGCTGTACGCTCCCGTCGATTGCGACAGGGTG
GTGTACCTGTTCGGCTGCAACTCTGCAGCGTGCAGCTCCACCCCTGCCGG
CTGGTCTGCTGTGAGGCAGCAA
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