mRNA_M-pyrifera_M_contig125740.5202.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig125740.5202.1
Unique Name	mRNA_M-pyrifera_M_contig125740.5202.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig125740.5202.1 vs. uniprot
Match: A0A142BZ12_ZIZJJ (Cytochrome c oxidase subunit 2 n=20 Tax=Magnoliopsida TaxID=3398 RepID=A0A142BZ12_ZIZJJ)

HSP 1 Score: 210 bits (534), Expect = 1.090e-66
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 1

Query:    1 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISTSVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGEA 312
            GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQIS SVQREGVYYGQCSEICGTNHAF PIVVEAVPRKDYGSRVSNQLIPQTGEA
Sbjct:  157 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFTPIVVEAVPRKDYGSRVSNQLIPQTGEA 260

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BLAST of mRNA_M-pyrifera_M_contig125740.5202.1 vs. uniprot
Match: E9P2B4_RICCO (Cytochrome c oxidase subunit 2 n=32 Tax=Pentapetalae TaxID=1437201 RepID=E9P2B4_RICCO)

HSP 1 Score: 209 bits (532), Expect = 2.190e-66
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 1

Query:    1 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISTSVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGEA 312
            GQSRLLEVDNRVVVPAKTHLRIIVT ADVPHSWAVPSSGVKCDAVPGRLNQIS SVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGEA
Sbjct:  157 GQSRLLEVDNRVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGEA 260

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BLAST of mRNA_M-pyrifera_M_contig125740.5202.1 vs. uniprot
Match: A0A455LQM3_GOSHI (Cytochrome c oxidase subunit 2 n=7 Tax=rosids TaxID=71275 RepID=A0A455LQM3_GOSHI)

HSP 1 Score: 207 bits (526), Expect = 1.780e-65
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 1

Query:    1 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISTSVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGEA 312
            GQSRLLEVDNRVVVPAKTHLRIIVT ADVPHSWAVPSSGVKCDAVPGRLNQIS SVQREGVYYGQCSEICGTNHAF PIVVEAVPRKDYGSRVSNQLIPQTGEA
Sbjct:  157 GQSRLLEVDNRVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFTPIVVEAVPRKDYGSRVSNQLIPQTGEA 260

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BLAST of mRNA_M-pyrifera_M_contig125740.5202.1 vs. uniprot
Match: A0A8F2YVH5_ROBPS (Cytochrome c oxidase subunit 2 n=1 Tax=Robinia pseudoacacia TaxID=35938 RepID=A0A8F2YVH5_ROBPS)

HSP 1 Score: 205 bits (522), Expect = 2.850e-65
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 1

Query:    1 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISTSVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGEA 312
            GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPS GVKCDAVPGRLNQIS SVQREGVYYGQCSEICGTNHAF PIVVEAVP KDYGSRVSNQLIPQTGEA
Sbjct:  127 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFTPIVVEAVPSKDYGSRVSNQLIPQTGEA 230

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BLAST of mRNA_M-pyrifera_M_contig125740.5202.1 vs. uniprot
Match: UPI001FF4D8FF (cytochrome c oxidase subunit 2 n=1 Tax=Potentilla micrantha TaxID=57941 RepID=UPI001FF4D8FF)

HSP 1 Score: 206 bits (524), Expect = 3.810e-65
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 1

Query:    1 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISTSVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGEA 312
            GQSRLLEVDNRVVVPAKTHLRIIVTPADV HSWAVPSSGVKCDAVPGRLNQIS SVQREGVYYGQCSEICGTNHAF PIVVEAVPRKDYGSRVSNQLIPQTGEA
Sbjct:  159 GQSRLLEVDNRVVVPAKTHLRIIVTPADVLHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFTPIVVEAVPRKDYGSRVSNQLIPQTGEA 262

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BLAST of mRNA_M-pyrifera_M_contig125740.5202.1 vs. uniprot
Match: G3EJ04_CUCSA (Cytochrome c oxidase subunit 2 n=9 Tax=rosids TaxID=71275 RepID=G3EJ04_CUCSA)

HSP 1 Score: 205 bits (521), Expect = 1.020e-64
Identity = 99/104 (95.19%), Postives = 101/104 (97.12%), Query Frame = 1

Query:    1 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISTSVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGEA 312
            GQSRLLEVDNRVV+PAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQIS  VQREGVYYGQCSEICGTNHAF PIVVEAVPRKDYGSRVSNQLIPQ+GEA
Sbjct:  157 GQSRLLEVDNRVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTPIVVEAVPRKDYGSRVSNQLIPQSGEA 260

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BLAST of mRNA_M-pyrifera_M_contig125740.5202.1 vs. uniprot
Match: A0A872PL77_GLYUR (Cytochrome c oxidase subunit 2 n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A872PL77_GLYUR)

HSP 1 Score: 205 bits (522), Expect = 1.360e-64
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 1

Query:    1 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISTSVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGEA 312
            GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPS GVKCDAVPGRLNQIS SVQREGVYYGQCSEICGTNHAF PIVVEAVP KDYGSRVSNQLIPQTGEA
Sbjct:  178 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFTPIVVEAVPSKDYGSRVSNQLIPQTGEA 281

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BLAST of mRNA_M-pyrifera_M_contig125740.5202.1 vs. uniprot
Match: F8K8R9_BRANA (Cytochrome c oxidase subunit 2 n=13 Tax=Brassiceae TaxID=981071 RepID=F8K8R9_BRANA)

HSP 1 Score: 204 bits (520), Expect = 1.450e-64
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 1

Query:    1 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISTSVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGEA 312
            GQSRLLEVDNRVVVPAKTHLRIIVT ADVPHSWAVPSSGVKCDAVPGRLNQIS  VQREGVYYGQCSEICGTNHAF PIVVEAVPRKDYGSRVSNQLIPQTGEA
Sbjct:  157 GQSRLLEVDNRVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTPIVVEAVPRKDYGSRVSNQLIPQTGEA 260

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BLAST of mRNA_M-pyrifera_M_contig125740.5202.1 vs. uniprot
Match: COX2_DAUCA (Cytochrome c oxidase subunit 2 n=36 Tax=asterids TaxID=71274 RepID=COX2_DAUCA)

HSP 1 Score: 204 bits (518), Expect = 3.010e-64
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 1

Query:    1 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISTSVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGEA 312
            GQSRLLEVDNRVVVPAKTHLRIIVT ADVPHSWAVPSSGVKCDAVPGRLNQIS SVQREGVYYGQCSEICGTNHAF PIVVEAV RKDYGSRVSNQLIPQTGEA
Sbjct:  158 GQSRLLEVDNRVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFTPIVVEAVSRKDYGSRVSNQLIPQTGEA 261

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BLAST of mRNA_M-pyrifera_M_contig125740.5202.1 vs. uniprot
Match: A0A1D6YXL4_9LAMI (Cytochrome c oxidase subunit 2 n=36 Tax=lamiids TaxID=91888 RepID=A0A1D6YXL4_9LAMI)

HSP 1 Score: 203 bits (517), Expect = 4.130e-64
Identity = 99/104 (95.19%), Postives = 99/104 (95.19%), Query Frame = 1

Query:    1 GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISTSVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGEA 312
            GQSRLLEVDNRVVVP KTHLRIIVTPADVPHSWAVPS GVKCDAVPGRLNQ S SVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTG A
Sbjct:  157 GQSRLLEVDNRVVVPEKTHLRIIVTPADVPHSWAVPSLGVKCDAVPGRLNQTSISVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQTGGA 260

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig125740.5202.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig125740.5202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A142BZ12_ZIZJJ	1.090e-66	98.08	Cytochrome c oxidase subunit 2 n=20 Tax=Magnoliops...	[more]
E9P2B4_RICCO	2.190e-66	98.08	Cytochrome c oxidase subunit 2 n=32 Tax=Pentapetal...	[more]
A0A455LQM3_GOSHI	1.780e-65	97.12	Cytochrome c oxidase subunit 2 n=7 Tax=rosids TaxI...	[more]
A0A8F2YVH5_ROBPS	2.850e-65	96.15	Cytochrome c oxidase subunit 2 n=1 Tax=Robinia pse...	[more]
UPI001FF4D8FF	3.810e-65	97.12	cytochrome c oxidase subunit 2 n=1 Tax=Potentilla ...	[more]
G3EJ04_CUCSA	1.020e-64	95.19	Cytochrome c oxidase subunit 2 n=9 Tax=rosids TaxI...	[more]
A0A872PL77_GLYUR	1.360e-64	96.15	Cytochrome c oxidase subunit 2 n=3 Tax=Pentapetala...	[more]
F8K8R9_BRANA	1.450e-64	96.15	Cytochrome c oxidase subunit 2 n=13 Tax=Brassiceae...	[more]
COX2_DAUCA	3.010e-64	96.15	Cytochrome c oxidase subunit 2 n=36 Tax=asterids T...	[more]
A0A1D6YXL4_9LAMI	4.130e-64	95.19	Cytochrome c oxidase subunit 2 n=36 Tax=lamiids Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig125740	contig	M-pyrifera_M_contig125740:198..512 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	208.4
Seed ortholog evalue	1.7e-51
Seed eggNOG ortholog	225117.XP_009343093.1
Preferred name	cox2
KEGG ko	ko:K02261
KEGG TC	3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathway	ko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG Module	M00154
Hectar predicted targeting category	other localisation
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005751,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0042773,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045277,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.	Cytochrome C oxidase, subunit
EggNOG OGs	37T4F@33090,3GGAX@35493,4JT1W@91835,COG1622@1,KOG4767@2759
COG Functional cat.	C
Best tax level	fabids
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03029
Exons	1
Model size	315
Cds size	315
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815773.0171819-CDS-M-pyrifera_M_contig125740:197..512	1622815773.0171819-CDS-M-pyrifera_M_contig125740:197..512	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig125740 198..512 -
1692277562.5578105-CDS-M-pyrifera_M_contig125740:197..512	1692277562.5578105-CDS-M-pyrifera_M_contig125740:197..512	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig125740 198..512 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig125740.5202.1	prot_M-pyrifera_M_contig125740.5202.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig125740 198..512 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig125740:198..512-
coding sequence from alignment at M-pyrifera_M_contig125740:198..512-

protein sequence of mRNA_M-pyrifera_M_contig125740.5202.1

>prot_M-pyrifera_M_contig125740.5202.1 ID=prot_M-pyrifera_M_contig125740.5202.1|Name=mRNA_M-pyrifera_M_contig125740.5202.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
GQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLN
QISTSVQREGVYYGQCSEICGTNHAFMPIVVEAVPRKDYGSRVSNQLIPQ
TGEA*

mRNA from alignment at M-pyrifera_M_contig125740:198..512-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig125740.5202.1 ID=mRNA_M-pyrifera_M_contig125740.5202.1|Name=mRNA_M-pyrifera_M_contig125740.5202.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig125740:198..512- (Macrocystis pyrifera P11B4 male)
GGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTGTACCAGCCAA
AACTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAGTTGGG
CTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAAT
CAGATCTCTACTTCGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAG
TGAGATTTGTGGAACTAATCATGCCTTTATGCCTATCGTCGTAGAAGCAG
TTCCTAGGAAAGATTATGGTTCTCGGGTATCCAATCAATTAATCCCCCAA
ACGGGGGAAGCTTAA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig125740:198..512-

>mRNA_M-pyrifera_M_contig125740.5202.1 ID=mRNA_M-pyrifera_M_contig125740.5202.1|Name=mRNA_M-pyrifera_M_contig125740.5202.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig125740:198..512- (Macrocystis pyrifera P11B4 male)
GGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTGTACCAGCCAA
AACTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAGTTGGG
CTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAAT
CAGATCTCTACTTCGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAG
TGAGATTTGTGGAACTAATCATGCCTTTATGCCTATCGTCGTAGAAGCAG
TTCCTAGGAAAGATTATGGTTCTCGGGTATCCAATCAATTAATCCCCCAA
ACGGGGGAAGCTTAAGGTCAATCACGTTTATTAGAAGTGGACAATAGAGT
GGTTGTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTGCTGATG
TACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTA
CCTGGTCGTTTAAATCAGATCTCTACTTCGGTACAACGAGAAGGAGTTTA
CTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTATGCCTA
TCGTCGTAGAAGCAGTTCCTAGGAAAGATTATGGTTCTCGGGTATCCAAT
CAATTAATCCCCCAAACGGGGGAAGCTTAA