mRNA_M-pyrifera_M_contig12574.5201.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12574.5201.1 vs. uniprot
Match: D7FNL1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL1_ECTSI) HSP 1 Score: 286 bits (732), Expect = 3.740e-92 Identity = 183/260 (70.38%), Postives = 201/260 (77.31%), Query Frame = 1
Query: 13 VVDAVGSKGGVVCAAVDPALAGAEACANADFAF---PADAATAARWAEGVSMGPGVIVDSSSGLRTLVLSDAAAGQE--AVLDLTVEADLRLAEELSFLSALPAALAGRFAKTGDSSPPLVIVYLSSLKGIKRAYGDRSVKGSLASKALDVALAEAFGAMSTGAGRRLTSQLVVGPALAQTLAIGGRRLEEEXXXXXXX--SNVTLVEITQFQLNMWTGVGLALLGFLAIYATFTMDVQPDSLLYAKFITDTSGGGLKTD 771
VVDAV GV+CAAVDPAL EAC+++ PADAA EG S GV VD+SSGLRTLVLS A G+E AVLDLTV+AD+RL EEL FLS LP AL+ R SPPLVIVYLSSLK I +YG RS+K LASKALD AL EAF AMS GAGRRLTSQL+VGPAL+Q LA+GGRRL+ +XXXXXXX + TLVEITQFQLNMWTGVGLAL+GFLAIYATF MDVQPDSLLYAKFITDTSGGGLKTD
Sbjct: 152 VVDAVS---GVICAAVDPALGYTEACSSSGGLLEVAPADAALG----EGNSP-TGVTVDTSSGLRTLVLSGADEGEEDAAVLDLTVDADVRLVEELIFLSRLPEALSERLVAGRAGSPPLVIVYLSSLKAINTSYGARSIKARLASKALDAALGEAFNAMSAGAGRRLTSQLIVGPALSQKLAVGGRRLQSDXXXXXXXXTNETTLVEITQFQLNMWTGVGLALMGFLAIYATFNMDVQPDSLLYAKFITDTSGGGLKTD 403
BLAST of mRNA_M-pyrifera_M_contig12574.5201.1 vs. uniprot
Match: A0A836C772_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C772_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.250e-14 Identity = 77/185 (41.62%), Postives = 95/185 (51.35%), Query Frame = 1
Query: 226 GQEAVLDLTVEADLRLAEELSFLSALPAALAGRFAKTGDSSPP-LVIVYLSSLKGIKRAYGDRSVKGSLASKALDVALAEAF--GAMSTGAGRRLTSQLVVGPALAQTLAIGGRRLEEEXXXXXXX-------SNVTLVEITQFQLNMWTGVGLALLGFLAIYATFTMDVQPDSLLYAKFITDTS 750
G A L +D L +EL+ L+A A L G PP L +++L++L R G + + LD AL A GA G LT+QLVVG LA XXXXXXX +NVTLV+ITQ+QLN+WTGV ALL AIY +MD+ DSLLYAKF DTS
Sbjct: 139 GVAAQLRADSPSDAALLQELALLAAARAQLLGARRSAXXXXPPALAVLHLTALGEAARG-GSSGAGVAXXAAVLDAALRGALAPGAQPEGEQLVLTAQLVVGAQLAPXXXXXXXXXXXXXXXXXXXXAGANATANVTLVDITQYQLNLWTGVFFALLVVAAIYGVASMDIGRDSLLYAKFQADTS 322
BLAST of mRNA_M-pyrifera_M_contig12574.5201.1 vs. uniprot
Match: A0A7S2D6B3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6B3_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 1.200e-9 Identity = 59/189 (31.22%), Postives = 88/189 (46.56%), Query Frame = 1
Query: 232 EAVLDLTVEADLRLAEELSFL----SALPAALAGRFA-KTGDSSPPLVIVYLSSLKGIKRAYGDRSVKGSLASKALDVALAEAFGAMSTGAGRRLTSQLVVGPALAQTLAIGGRRLEEEXXXXXXXSN-----------VTLVEITQFQLNMWTGVGLALLGFLAIYATFTMDVQPDSLLYAKFITDTS 750
+A DL+ EAD L EEL+ S LP A+ A K+ P L + +++L + +GD S K + A +D A E +S R Q V A+ ++ R L +E +N V++ +I ++ L +WTG+ + L+ AI MD+QPDSLLYAKF D S
Sbjct: 209 KAEFDLSDEADALLLEELNLACHVASGLPDAVQDASATKSLSDRPDLFFMTVNALPHLLDEHGDDSPKANAAMSLVDAAAREVLAGISA----RYDDQ--VAAAVLMDNSVAARPLHDEFHRFLSATNAPTMTPGYNSSVSIEQIVEYNLGLWTGIVMVLILLSAICCMVNMDIQPDSLLYAKFQADVS 391
BLAST of mRNA_M-pyrifera_M_contig12574.5201.1 vs. uniprot
Match: A0A7S2R5A0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5A0_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 2.560e-6 Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 517 VGPALAQTLAIGG--RRLEEEXXXXXXXSNVTLVEITQFQLNMWTGVGLALLGFLAIYATFTMDVQPDSLLYAKFITDTS 750
+G +L L IG RRLE++ TL EI FQ+N+WT V L L+ A+ MD+QPDSLLYAKF D S
Sbjct: 274 LGKSLGVQLLIGDSRRRLEDDPDYY------TLPEIVTFQINLWTAVALVLVLLSALCCMVNMDIQPDSLLYAKFQADVS 347
BLAST of mRNA_M-pyrifera_M_contig12574.5201.1 vs. uniprot
Match: W7U2R1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2R1_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 3.960e-5 Identity = 60/179 (33.52%), Postives = 85/179 (47.49%), Query Frame = 1
Query: 259 ADLRLAEELSFLSALPAALAGRFAKTGDSSPPLVIVYLSSLKGIKRAYGDRSVKGSLASKALDVALAEAFGAMSTGAGRRLTSQ--LVVGPALAQTLAI-----GGRRLEEEXXXXXXXSNVTLVEITQFQLNMWTGVGLALLGFLAIYATFTMDVQP-DSLLYAKFITDTSGGGLKTD 771
AD R E+ L LP L G+ G+ P +++ L+G++ AYG S + SLA + +D AL + A+ RR ++ L+ L QT A+ RRL+ + VT +I + WT VGL L +++ P DSLLYAKF DTSGG KTD
Sbjct: 216 ADRRFLAEVQSLLRLPFLLPGKPGAQGNG-PDVILYAADGLRGLEVAYGVSSPQVSLAGRMMDKALDQTSRALE----RRYAAEGGLISQVLLRQTGALVEVARPRRRLQPTGEDA---TPVTEEDIFNVNIITWTTVGLILALLMSLCLLAGAGSGPKDSLLYAKFAADTSGG--KTD 384 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12574.5201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12574.5201.1 >prot_M-pyrifera_M_contig12574.5201.1 ID=prot_M-pyrifera_M_contig12574.5201.1|Name=mRNA_M-pyrifera_M_contig12574.5201.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=258bp MNQPVVDAVGSKGGVVCAAVDPALAGAEACANADFAFPADAATAARWAEGback to top mRNA from alignment at M-pyrifera_M_contig12574:5462..9086- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12574.5201.1 ID=mRNA_M-pyrifera_M_contig12574.5201.1|Name=mRNA_M-pyrifera_M_contig12574.5201.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3625bp|location=Sequence derived from alignment at M-pyrifera_M_contig12574:5462..9086- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12574:5462..9086- >mRNA_M-pyrifera_M_contig12574.5201.1 ID=mRNA_M-pyrifera_M_contig12574.5201.1|Name=mRNA_M-pyrifera_M_contig12574.5201.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1548bp|location=Sequence derived from alignment at M-pyrifera_M_contig12574:5462..9086- (Macrocystis pyrifera P11B4 male)back to top |