mRNA_M-pyrifera_M_contig12574.5200.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12574.5200.1
Unique NamemRNA_M-pyrifera_M_contig12574.5200.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12574.5200.1 vs. uniprot
Match: D7FNL1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 6.430e-26
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = -3 
Query:  331 TLVEITQFQLNMWTGVGLALLGFLAIYATFTMDVQPDSLLYAKFITDTSGGGLKTD 498
            TLVEITQFQLNMWTGVGLAL+GFLAIYATF MDVQPDSLLYAKFITDTSGGGLKTD
Sbjct:  348 TLVEITQFQLNMWTGVGLALMGFLAIYATFNMDVQPDSLLYAKFITDTSGGGLKTD 403
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BLAST of mRNA_M-pyrifera_M_contig12574.5200.1 vs. uniprot
Match: A0A836C772_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C772_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.310e-9
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = -3 
Query:  352 VTLVEITQFQLNMWTGVGLALLGFLAIYATFTMDVQPDSLLYAKFITDTS 501
            VTLV+ITQ+QLN+WTGV  ALL   AIY   +MD+  DSLLYAKF  DTS
Sbjct:  273 VTLVDITQYQLNLWTGVFFALLVVAAIYGVASMDIGRDSLLYAKFQADTS 322
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BLAST of mRNA_M-pyrifera_M_contig12574.5200.1 vs. uniprot
Match: A0A7S2R5A0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5A0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.820e-6
Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = -3 
Query:  352 TLVEITQFQLNMWTGVGLALLGFLAIYATFTMDVQPDSLLYAKFITDTS 498
            TL EI  FQ+N+WT V L L+   A+     MD+QPDSLLYAKF  D S
Sbjct:  299 TLPEIVTFQINLWTAVALVLVLLSALCCMVNMDIQPDSLLYAKFQADVS 347
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BLAST of mRNA_M-pyrifera_M_contig12574.5200.1 vs. uniprot
Match: A0A7S3JQS7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQS7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.620e-5
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = -3 
Query:  337 EITQFQLNMWTGVGLALLGFLAIYATFTMDVQPDSLLYAKFITDTSGGGLK 489
            +I QFQLNMWTG+ L L+   A+ A   M  + DSLLYA F  + SGGGL 
Sbjct:  287 DIRQFQLNMWTGIALVLVLAAALAAMVNMKPEYDSLLYATFQANVSGGGLS 337
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12574.5200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNL1_ECTSI6.430e-2696.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C772_9STRA4.310e-966.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2R5A0_9STRA7.820e-655.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3JQS7_9STRA2.620e-552.94Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12574contigM-pyrifera_M_contig12574:5135..5637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size503
Cds size300
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.8816714-CDS-M-pyrifera_M_contig12574:5134..54341622815772.8816714-CDS-M-pyrifera_M_contig12574:5134..5434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12574 5135..5434 +
1692277562.5077028-CDS-M-pyrifera_M_contig12574:5134..54341692277562.5077028-CDS-M-pyrifera_M_contig12574:5134..5434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12574 5135..5434 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.8929586-UTR-M-pyrifera_M_contig12574:5434..56371622815772.8929586-UTR-M-pyrifera_M_contig12574:5434..5637Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12574 5435..5637 +
1692277562.5164177-UTR-M-pyrifera_M_contig12574:5434..56371692277562.5164177-UTR-M-pyrifera_M_contig12574:5434..5637Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12574 5435..5637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12574.5200.1prot_M-pyrifera_M_contig12574.5200.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12574 5135..5434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12574.5200.1

>prot_M-pyrifera_M_contig12574.5200.1 ID=prot_M-pyrifera_M_contig12574.5200.1|Name=mRNA_M-pyrifera_M_contig12574.5200.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MNVLCFNFEPVSHADNKNACTRNSHFHPPTPSFAQNPDALPYTSGLQPNT
TRGARKIRQGGGVALETLASLRHNGRPARAEKTRLKKARRSIINQTSNQ*
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mRNA from alignment at M-pyrifera_M_contig12574:5135..5637+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12574.5200.1 ID=mRNA_M-pyrifera_M_contig12574.5200.1|Name=mRNA_M-pyrifera_M_contig12574.5200.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=503bp|location=Sequence derived from alignment at M-pyrifera_M_contig12574:5135..5637+ (Macrocystis pyrifera P11B4 male)
ATGAACGTGTTGTGTTTCAATTTCGAGCCCGTCTCCCACGCAGACAACAA
GAACGCTTGTACTCGAAACTCTCATTTCCACCCCCCCACCCCCTCCTTCG
CCCAAAATCCTGACGCCCTTCCCTATACTAGTGGACTCCAACCCAACACT
ACGCGGGGCGCGCGCAAGATCAGACAAGGGGGTGGTGTAGCCTTAGAGAC
CTTGGCCTCGCTCCGACACAACGGACGGCCAGCGCGAGCAGAGAAGACCA
GACTAAAAAAAGCCCGAAGATCCATCATCAATCAAACCAGCAATCAATAG
CTTTCACGTTCACAAACAAAAAGAAAGCTAATCGGTCTTCAGTCCGCCCC
CGCTGGTGTCGGTGATGAACTTGGCGTACAGGAGGCTATCGGGCTGCACG
TCCATGGTGAAGGTGGCGTAGATAGCCAAGAAGCCGAGGAGGGCGAGGCC
GACTCCCGTCCACATGTTGAGCTGGAACTGGGTGATTTCGACCAGGGTTA
CGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12574:5135..5637+

>mRNA_M-pyrifera_M_contig12574.5200.1 ID=mRNA_M-pyrifera_M_contig12574.5200.1|Name=mRNA_M-pyrifera_M_contig12574.5200.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig12574:5135..5637+ (Macrocystis pyrifera P11B4 male)
ATGAACGTGTTGTGTTTCAATTTCGAGCCCGTCTCCCACGCAGACAACAA
GAACGCTTGTACTCGAAACTCTCATTTCCACCCCCCCACCCCCTCCTTCG
CCCAAAATCCTGACGCCCTTCCCTATACTAGTGGACTCCAACCCAACACT
ACGCGGGGCGCGCGCAAGATCAGACAAGGGGGTGGTGTAGCCTTAGAGAC
CTTGGCCTCGCTCCGACACAACGGACGGCCAGCGCGAGCAGAGAAGACCA
GACTAAAAAAAGCCCGAAGATCCATCATCAATCAAACCAGCAATCAATAG
ATGAACGTGTTGTGTTTCAATTTCGAGCCCGTCTCCCACGCAGACAACAA
GAACGCTTGTACTCGAAACTCTCATTTCCACCCCCCCACCCCCTCCTTCG
CCCAAAATCCTGACGCCCTTCCCTATACTAGTGGACTCCAACCCAACACT
ACGCGGGGCGCGCGCAAGATCAGACAAGGGGGTGGTGTAGCCTTAGAGAC
CTTGGCCTCGCTCCGACACAACGGACGGCCAGCGCGAGCAGAGAAGACCA
GACTAAAAAAAGCCCGAAGATCCATCATCAATCAAACCAGCAATCAATAG
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