mRNA_M-pyrifera_M_contig125731.5199.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125731.5199.1
Unique NamemRNA_M-pyrifera_M_contig125731.5199.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125731.5199.1 vs. uniprot
Match: A0A7M6DMV6_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DMV6_9CNID)

HSP 1 Score: 57.8 bits (138), Expect = 4.940e-8
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   40 GLTLAVLRGRNLPVCDSNGKSDPYVKATYAVPKESYLWKGKTKVCHKTLDPEWNETFEL 216
            GLT+++LR RNL   D NG+SDP+V       K+    K KTKV ++TL+P WNE   L
Sbjct:  284 GLTVSILRARNLMALDLNGRSDPFVIVRVGTSKQE---KYKTKVVYRTLNPVWNEQVTL 339          
BLAST of mRNA_M-pyrifera_M_contig125731.5199.1 vs. uniprot
Match: K0KQ54_WICCF (Tricalbin-2 n=1 Tax=Wickerhamomyces ciferrii (strain ATCC 14091 / BCRC 22168 / CBS 111 / JCM 3599 / NBRC 0793 / NRRL Y-1031 F-60-10) TaxID=1206466 RepID=K0KQ54_WICCF)

HSP 1 Score: 57.0 bits (136), Expect = 9.370e-8
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   13 PPQNLRRNRG-LTLAVLRGRNLPVCDSNGKSDPYVKATYAVPKESYLWKGKTKVCHKTLDPEWNETFEL 216
            PP +L  N G L+L ++   NL   DSNGKSDP++KA Y   +E   +  KTK   KTLDP WNE   L
Sbjct:  975 PPADLITNSGQLSLEIISANNLLSADSNGKSDPFIKA-YLPQEEDPFY--KTKTIKKTLDPVWNEKTNL 1040          
BLAST of mRNA_M-pyrifera_M_contig125731.5199.1 vs. uniprot
Match: A0A8J8VZ81_9EURO (Uncharacterized protein n=1 Tax=Penicillium sp. RFL-2021a TaxID=2839758 RepID=A0A8J8VZ81_9EURO)

HSP 1 Score: 57.0 bits (136), Expect = 9.420e-8
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   43 LTLAVLRGRNLPVCDSNGKSDPYVKATYAVPKESYLWKGKTKVCHKTLDPEWNETFE 213
            L + V++G NLP+ DSNGKSDPY +       + +++  KT+V  K L+P WNE FE
Sbjct: 1127 LQVKVIKGVNLPIADSNGKSDPYCRFYIGGDDKHHIY--KTEVIKKNLNPVWNEAFE 1181          
BLAST of mRNA_M-pyrifera_M_contig125731.5199.1 vs. uniprot
Match: G0SC68_CHATD (Putative lipid-binding protein n=1 Tax=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) TaxID=759272 RepID=G0SC68_CHATD)

HSP 1 Score: 56.6 bits (135), Expect = 1.290e-7
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 1
Query:   13 PPQNLRRNRGLTLAVLRGRNLPVCDSNGKSDPYVKATYAVPKESYLWKGKTKVCHKTLDPEWNETFEL 216
            P +++     L + VL   NLP  DSNGKSDPY K  +   +E +    KTK   KTL+PEWNE F +
Sbjct: 1087 PSESINNMGNLRIDVLDAENLPSADSNGKSDPYAKFEFNG-QEVF----KTKTVKKTLNPEWNENFNI 1149          
BLAST of mRNA_M-pyrifera_M_contig125731.5199.1 vs. uniprot
Match: A0A1E3PCK9_WICAA (Uncharacterized protein n=1 Tax=Wickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) TaxID=683960 RepID=A0A1E3PCK9_WICAA)

HSP 1 Score: 56.2 bits (134), Expect = 1.750e-7
Identity = 31/69 (44.93%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   13 PPQNLRRNRG-LTLAVLRGRNLPVCDSNGKSDPYVKATYAVPKESYLWKGKTKVCHKTLDPEWNETFEL 216
            PP +L  N G L L ++   NL   DSNGKSDP+++A     ++S+    KTK   KTLDP WNE   L
Sbjct:  994 PPADLITNSGHLDLDIISANNLLSADSNGKSDPFIRAYINDEEDSFY---KTKTIKKTLDPTWNEKTSL 1059          
BLAST of mRNA_M-pyrifera_M_contig125731.5199.1 vs. uniprot
Match: S3CSW2_OPHP1 (C2 domain-containing protein n=1 Tax=Ophiostoma piceae (strain UAMH 11346) TaxID=1262450 RepID=S3CSW2_OPHP1)

HSP 1 Score: 56.2 bits (134), Expect = 1.760e-7
Identity = 31/68 (45.59%), Postives = 39/68 (57.35%), Query Frame = 1
Query:   13 PPQNLRRNRGLTLAVLRGRNLPVCDSNGKSDPYVKATYAVPKESYLWKGKTKVCHKTLDPEWNETFEL 216
            P +++     L + VL G NLP  DSNGKSDPY K  + +         KTKV  KTL+P WNE FE+
Sbjct: 1075 PRESINNMGNLRVDVLDGENLPAADSNGKSDPYCK--FELNGTEVF---KTKVQKKTLNPAWNEFFEI 1137          
BLAST of mRNA_M-pyrifera_M_contig125731.5199.1 vs. uniprot
Match: A0A0X3NJA6_SCHSO (Protein kinase C (Fragment) n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3NJA6_SCHSO)

HSP 1 Score: 55.8 bits (133), Expect = 2.320e-7
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 1
Query:   43 LTLAVLRGRNLPVCDSNGKSDPYVKATYAVPKESYLWKGKTKVCHKTLDPEWNETFEL 216
            L + +L  RNL   D NG +DPYVK      +++   K KTK+   TL+P+WNE F++
Sbjct:  159 LEVNILEARNLTPMDPNGLADPYVKLKLTPAEDTSKMKLKTKIIRSTLNPQWNEEFQI 216          
BLAST of mRNA_M-pyrifera_M_contig125731.5199.1 vs. uniprot
Match: A0A2D3UN21_9PEZI (Phosphatidylserine decarboxylase proenzyme 2 n=1 Tax=Ramularia collo-cygni TaxID=112498 RepID=A0A2D3UN21_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 2.390e-7
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   43 LTLAVLRGRNLPVCDSNGKSDPYVKATYAVPKESYLWKGKTKVCHKTLDPEWNETFEL 216
            L + VL+GRNL   D +G SDP++  T    KE+      T V  KTL+PEWN+TFEL
Sbjct:   79 LRVQVLKGRNLAAKDKSGTSDPFLVLTLGDAKEA------TSVVSKTLNPEWNQTFEL 130          
BLAST of mRNA_M-pyrifera_M_contig125731.5199.1 vs. uniprot
Match: F2QW98_KOMPC (ER-plasma membrane tethering protein n=3 Tax=Komagataella TaxID=460517 RepID=F2QW98_KOMPC)

HSP 1 Score: 55.8 bits (133), Expect = 2.400e-7
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   43 LTLAVLRGRNLPVCDSNGKSDPYVKATYAVPKESYLWKGKTKVCHKTLDPEWNETFEL 216
            L++ VL+G++LP  D NGKSDP+ +  Y    + Y    KTK   +TL+PEWNE+FE+
Sbjct:  995 LSVTVLKGKDLPSADRNGKSDPFCEL-YLNDNQVY----KTKKIKRTLNPEWNESFEV 1047          
BLAST of mRNA_M-pyrifera_M_contig125731.5199.1 vs. uniprot
Match: A0A136IM94_9PEZI (C2 domain-containing protein n=1 Tax=Microdochium bolleyi TaxID=196109 RepID=A0A136IM94_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 2.410e-7
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 1
Query:   13 PPQNLRRNRGLTLAVLRGRNLPVCDSNGKSDPYVKATYAVPKESYLWKGKTKVCHKTLDPEWNETFEL 216
            P +++     L + VL   +LP  D NGKSDPY K  Y     + +   KTK   KTL+PEWNE FE+
Sbjct: 1092 PSESINNMGNLRVDVLSASDLPAADRNGKSDPYAKFEY-----NGVEVFKTKTIKKTLNPEWNEFFEV 1154          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125731.5199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M6DMV6_9CNID4.940e-847.46Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
K0KQ54_WICCF9.370e-847.83Tricalbin-2 n=1 Tax=Wickerhamomyces ciferrii (stra... [more]
A0A8J8VZ81_9EURO9.420e-845.61Uncharacterized protein n=1 Tax=Penicillium sp. RF... [more]
G0SC68_CHATD1.290e-744.12Putative lipid-binding protein n=1 Tax=Chaetomium ... [more]
A0A1E3PCK9_WICAA1.750e-744.93Uncharacterized protein n=1 Tax=Wickerhamomyces an... [more]
S3CSW2_OPHP11.760e-745.59C2 domain-containing protein n=1 Tax=Ophiostoma pi... [more]
A0A0X3NJA6_SCHSO2.320e-741.38Protein kinase C (Fragment) n=2 Tax=Schistocephalu... [more]
A0A2D3UN21_9PEZI2.390e-748.28Phosphatidylserine decarboxylase proenzyme 2 n=1 T... [more]
F2QW98_KOMPC2.400e-746.55ER-plasma membrane tethering protein n=3 Tax=Komag... [more]
A0A136IM94_9PEZI2.410e-742.65C2 domain-containing protein n=1 Tax=Microdochium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125731contigM-pyrifera_M_contig125731:96..374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score66.6
Seed ortholog evalue5.3e-09
Seed eggNOG ortholog340170.XP_007375607.1
Preferred nameTCB1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0005933,GO:0005938,GO:0006996,GO:0007029,GO:0008150,GO:0008289,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0019216,GO:0019220,GO:0019222,GO:0022406,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032541,GO:0035303,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0050789,GO:0050794,GO:0051174,GO:0051179,GO:0051286,GO:0051640,GO:0051641,GO:0051643,GO:0060255,GO:0060304,GO:0061024,GO:0061817,GO:0065007,GO:0071782,GO:0071840,GO:0071944,GO:0080090,GO:0090158,GO:0097708,GO:0098827,GO:0099568,GO:0140056,GO:1903725
EggNOG free text desc.C2 domain
EggNOG OGs38DXC@33154,3NU87@4751,3QJI2@4890,3RRKK@4891,47BNN@766764,COG5038@1,KOG1012@2759
COG Functional cat.M
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
Exons2
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.8283179-CDS-M-pyrifera_M_contig125731:95..1791622815772.8283179-CDS-M-pyrifera_M_contig125731:95..179Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125731 96..179 -
1692277562.4838195-CDS-M-pyrifera_M_contig125731:95..1791692277562.4838195-CDS-M-pyrifera_M_contig125731:95..179Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125731 96..179 -
1622815772.8428736-CDS-M-pyrifera_M_contig125731:242..3741622815772.8428736-CDS-M-pyrifera_M_contig125731:242..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125731 243..374 -
1692277562.4984243-CDS-M-pyrifera_M_contig125731:242..3741692277562.4984243-CDS-M-pyrifera_M_contig125731:242..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125731 243..374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125731.5199.1prot_M-pyrifera_M_contig125731.5199.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125731 96..374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125731.5199.1

>prot_M-pyrifera_M_contig125731.5199.1 ID=prot_M-pyrifera_M_contig125731.5199.1|Name=mRNA_M-pyrifera_M_contig125731.5199.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
SGEQPPQNLRRNRGLTLAVLRGRNLPVCDSNGKSDPYVKATYAVPKESYL
WKGKTKVCHKTLDPEWNETFEL
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mRNA from alignment at M-pyrifera_M_contig125731:96..374-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125731.5199.1 ID=mRNA_M-pyrifera_M_contig125731.5199.1|Name=mRNA_M-pyrifera_M_contig125731.5199.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig125731:96..374- (Macrocystis pyrifera P11B4 male)
AGCGGAGAGCAACCCCCGCAAAACCTCAGGCGGAATCGAGGGCTGACCCT TGCAGTGCTCCGCGGGAGAAACCTTCCGGTGTGTGACAGCAACGGCAAGA GCGATCCCTACGTGAAGGCCACCTACGCAGTGGTTGCAGGGGACGGACGC AATGCGGCCTCCTCCAGGCGGGCAAGCCTCATAAAGATCACCAAGCCCAA GGAGAGCTATCTCTGGAAGGGCAAGACCAAAGTCTGCCACAAGACTCTCG ACCCTGAGTGGAACGAAACCTTCGAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125731:96..374-

>mRNA_M-pyrifera_M_contig125731.5199.1 ID=mRNA_M-pyrifera_M_contig125731.5199.1|Name=mRNA_M-pyrifera_M_contig125731.5199.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig125731:96..374- (Macrocystis pyrifera P11B4 male)
AGCGGAGAGCAACCCCCGCAAAACCTCAGGCGGAATCGAGGGCTGACCCT
TGCAGTGCTCCGCGGGAGAAACCTTCCGGTGTGTGACAGCAACGGCAAGA
GCGATCCCTACGTGAAGGCCACCTACGCAGTGAGCGGAGAGCAACCCCCG
CAAAACCTCAGGCGGAATCGAGGGCTGACCCTTGCAGTGCTCCGCGGGAG
AAACCTTCCGGTGTGTGACAGCAACGGCAAGAGCGATCCCTACGTGAAGG
CCACCTACGCAGTGCCCAAGGAGAGCTATCTCTGGAAGGGCAAGACCAAA
GTCTGCCACAAGACTCTCGACCCTGAGTGGAACGAAACCTTCGAGCTGCC
CAAGGAGAGCTATCTCTGGAAGGGCAAGACCAAAGTCTGCCACAAGACTC
TCGACCCTGAGTGGAACGAAACCTTCGAGCTG
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