mRNA_M-pyrifera_M_contig125700.5191.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125700.5191.1
Unique NamemRNA_M-pyrifera_M_contig125700.5191.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125700.5191.1 vs. uniprot
Match: A0A507F7D2_9FUNG (U3 small nucleolar RNA-associated protein 10 n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507F7D2_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 1.740e-5
Identity = 42/160 (26.25%), Postives = 78/160 (48.75%), Query Frame = 1 
Query:    4 RWEWLEITKKHDSGVPRSLLVSEAKRELSILQFLADASKRSVAAKVSSSKAIICLYAAIALEVISSVKVDDRLIQLLLPSLFDGLACSASSDLQAASYMIVVQLAEFTSFTEELASALL-VALCASSRRSVDDTAMVLIHFCQMQSQLTEFPAEALEHLL 480
            +W WL+  +     + R  LV     +L ++QF+ D  ++ +     ++  +   +    +E+ISS ++ D L+++L+P LF  +A     ++QAASYMI+  L+    F+  + SA+  V +  +S       A  L+     Q     F  ++LE LL
Sbjct:  159 KWAWLQAFRDKRVSLDRKTLVQRCVSDLPLIQFICDMMEKLLIPNTPNAS-LCSFFTGTMVELISSTRISDDLMRILMPCLF-AMAALDVPNVQAASYMIMAHLSNKAPFSTPIISAISDVVISHASPDLCKYAACCLVSLYDTQEACPAFSGDSLEVLL 316
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125700.5191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A507F7D2_9FUNG1.740e-526.25U3 small nucleolar RNA-associated protein 10 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125700contigM-pyrifera_M_contig125700:1..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score72.8
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog78898.MVEG_10586T0
Preferred nameUTP10
KEGG koko:K14550
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000785,GO:0000792,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005732,GO:0005737,GO:0005739,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016021,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0030688,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0034455,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.BP28CT (NUC211) domain
EggNOG OGs1GT0M@112252,38FG2@33154,3NV87@4751,KOG1837@1,KOG1837@2759
COG Functional cat.S
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.5351737-CDS-M-pyrifera_M_contig125700:0..4891622815772.5351737-CDS-M-pyrifera_M_contig125700:0..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125700 1..489 -
1692277562.364938-CDS-M-pyrifera_M_contig125700:0..4891692277562.364938-CDS-M-pyrifera_M_contig125700:0..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125700 1..489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125700.5191.1prot_M-pyrifera_M_contig125700.5191.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125700 1..489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125700.5191.1

>prot_M-pyrifera_M_contig125700.5191.1 ID=prot_M-pyrifera_M_contig125700.5191.1|Name=mRNA_M-pyrifera_M_contig125700.5191.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
TRWEWLEITKKHDSGVPRSLLVSEAKRELSILQFLADASKRSVAAKVSSS
KAIICLYAAIALEVISSVKVDDRLIQLLLPSLFDGLACSASSDLQAASYM
IVVQLAEFTSFTEELASALLVALCASSRRSVDDTAMVLIHFCQMQSQLTE
FPAEALEHLLELP
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mRNA from alignment at M-pyrifera_M_contig125700:1..489-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125700.5191.1 ID=mRNA_M-pyrifera_M_contig125700.5191.1|Name=mRNA_M-pyrifera_M_contig125700.5191.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig125700:1..489- (Macrocystis pyrifera P11B4 male)
ACTCGGTGGGAATGGCTGGAGATCACGAAGAAGCATGATAGTGGTGTGCC
TCGCTCTCTCCTGGTTTCAGAGGCGAAGCGGGAGCTGTCGATCCTCCAGT
TCTTGGCCGACGCATCCAAGCGGTCTGTTGCAGCAAAGGTGTCCTCCTCC
AAGGCCATCATCTGTCTGTACGCTGCCATTGCTCTGGAGGTGATATCCTC
GGTGAAGGTCGACGACCGCCTCATCCAGCTGCTCCTGCCTTCGCTCTTCG
ACGGCCTTGCGTGCTCCGCTAGCTCCGACCTCCAGGCCGCCTCCTACATG
ATCGTCGTGCAGCTGGCCGAGTTCACCAGCTTCACGGAGGAGCTGGCCAG
CGCCCTGCTGGTCGCGCTGTGTGCCTCGTCTAGGAGGTCTGTTGACGACA
CAGCAATGGTCCTCATTCACTTCTGTCAGATGCAGTCACAACTTACGGAG
TTTCCCGCAGAGGCATTGGAGCACCTCCTGGAGCTGCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125700:1..489-

>mRNA_M-pyrifera_M_contig125700.5191.1 ID=mRNA_M-pyrifera_M_contig125700.5191.1|Name=mRNA_M-pyrifera_M_contig125700.5191.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig125700:1..489- (Macrocystis pyrifera P11B4 male)
ACTCGGTGGGAATGGCTGGAGATCACGAAGAAGCATGATAGTGGTGTGCC
TCGCTCTCTCCTGGTTTCAGAGGCGAAGCGGGAGCTGTCGATCCTCCAGT
TCTTGGCCGACGCATCCAAGCGGTCTGTTGCAGCAAAGGTGTCCTCCTCC
AAGGCCATCATCTGTCTGTACGCTGCCATTGCTCTGGAGGTGATATCCTC
GGTGAAGGTCGACGACCGCCTCATCCAGCTGCTCCTGCCTTCGCTCTTCG
ACGGCCTTGCGTGCTCCGCTAGCTCCGACCTCCAGGCCGCCTCCTACATG
ATCGTCGTGCAGCTGGCCGAGTTCACCAGCTTCACGGAGGAGCTGGCCAG
CGCCCTGCTGGTCGCGCTGTGTGCCTCGTCTAGGAGGTCTGTTGACGACA
CAGCAATGGTCCTCATTCACTTCTGTCAGATGCAGTCACAACTTACGGAG
TTTCCCGCAGAGGCATTGGAGCACCTCCTGGAGCTGCCCACTCGGTGGGA
ATGGCTGGAGATCACGAAGAAGCATGATAGTGGTGTGCCTCGCTCTCTCC
TGGTTTCAGAGGCGAAGCGGGAGCTGTCGATCCTCCAGTTCTTGGCCGAC
GCATCCAAGCGGTCTGTTGCAGCAAAGGTGTCCTCCTCCAAGGCCATCAT
CTGTCTGTACGCTGCCATTGCTCTGGAGGTGATATCCTCGGTGAAGGTCG
ACGACCGCCTCATCCAGCTGCTCCTGCCTTCGCTCTTCGACGGCCTTGCG
TGCTCCGCTAGCTCCGACCTCCAGGCCGCCTCCTACATGATCGTCGTGCA
GCTGGCCGAGTTCACCAGCTTCACGGAGGAGCTGGCCAGCGCCCTGCTGG
TCGCGCTGTGTGCCTCGTCTAGGAGGTCTGTTGACGACACAGCAATGGTC
CTCATTCACTTCTGTCAGATGCAGTCACAACTTACGGAGTTTCCCGCAGA
GGCATTGGAGCACCTCCTGGAGCTGCCC
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