mRNA_M-pyrifera_M_contig125692.5189.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125692.5189.1
Unique NamemRNA_M-pyrifera_M_contig125692.5189.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125692.5189.1 vs. uniprot
Match: A0A3D5DIF8_9GAMM (Cytochrome c5 family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DIF8_9GAMM)

HSP 1 Score: 160 bits (404), Expect = 1.600e-45
Identity = 88/173 (50.87%), Postives = 118/173 (68.21%), Query Frame = 1
Query:    1 MSQVDDAAFVRNFSLVLVFLVVVGIVAFILAKVVNGAFQATVTDDEVATERLAPVGNANIGEPFVMGGAE---STTAAAGAEPAA---AAGPVDVGTATYGKICFACHDAGIGGAPKIGDKAAWADRLQKGPEMLVSNAINGFQGDAGIMPPKGGMASLTDDEVRAAVMHMLA 501
            M +   +  VR+ + V+  L+  G +AF+LA ++ G      +++ VA +R+AP+G ANIG+PF++       S TA    EP+     A PVD G A Y KICFACHDAG+GGAPKIG +++W +R +KG EMLV NAINGF G+ GIMPPKGG+ SL+DDEVRAAV +MLA
Sbjct:    1 MGEAQKSKLVRDTTAVVALLLGTGFIAFLLAWIIFGKPNIDNSEETVA-KRIAPIGTANIGDPFLLDDGTLFLSNTATTATEPSTKTTVAAPVDPGKAAYDKICFACHDAGVGGAPKIGFRSSWGNRPEKGSEMLVINAINGFTGEMGIMPPKGGLPSLSDDEVRAAVTYMLA 172          
BLAST of mRNA_M-pyrifera_M_contig125692.5189.1 vs. uniprot
Match: A0A1B4XC15_9GAMM (Cytochrome C n=1 Tax=Sulfuricaulis limicola TaxID=1620215 RepID=A0A1B4XC15_9GAMM)

HSP 1 Score: 126 bits (317), Expect = 6.040e-34
Identity = 75/164 (45.73%), Postives = 101/164 (61.59%), Query Frame = 1
Query:   16 DAAFVRNFSLVLVFLVVVGIVAFILAKVVNGAFQATV---TDDEVATERLAPVGNANIGEPFVMGGAESTTAAAGAEPAAAAGPVDVGTATYGKICFACHDAGIGGAPKIGDKAAWADRLQKGPEMLVSNAINGFQGDAGIMPPKGGMASLTDDEVRAAVMHML 498
            D AF ++FS +++ LV + IV FI+A++V G    TV    D +   ER+ PVG   +G       A S++      PAA A   D G ATY   C ACH AG+ GAPK GDKAAWA R+ +G + L ++A+ GFQG AG+MPPKGG  SL D++V AAV +M+
Sbjct:    3 DRAFWKSFSGLVLALVALTIVLFIVAQMVGGKPAKTVETTADAKAIAERIKPVGEVTVGAAPAERVASSSSVMDAIIPAANAAGADKGKATYDASCMACHAAGVAGAPKFGDKAAWAPRIAQGADTLHTHALKGFQGKAGMMPPKGGNMSLKDEDVMAAVDYMV 166          
BLAST of mRNA_M-pyrifera_M_contig125692.5189.1 vs. uniprot
Match: A0A1S9CW55_9GAMM (Cytochrome c-555 n=1 Tax=Chromatiales bacterium USCg_Taylor TaxID=1934255 RepID=A0A1S9CW55_9GAMM)

HSP 1 Score: 116 bits (290), Expect = 1.130e-29
Identity = 74/184 (40.22%), Postives = 95/184 (51.63%), Query Frame = 1
Query:    1 MSQVDDAAFVRNFSLVLVFLVVVGIVAFILAKVVNGAFQATVTDDEVATERLAPVGNANIG------------------EPFVMGGAESTTAAAGAEPAAAAGPVDVGTATYGKICFACHDAGIGGAPKIGDKAAWADRLQKGPEMLVSNAINGFQGDAGIMPPKGGMASLTDDEVRAAVMHML 498
            M+  +DA F++    VL  LVV  +V    +    G  + T  + +   ER+APVG   +                   +P   G   +    A A  A  A P D G A Y   CFACH +GI GAPK+ DKAAW  RL +G E LV+ AI GFQG  GIMPPKGG A L D +V+AAVM+M+
Sbjct:    1 MTSDEDANFIKTLIGVLGALVVFSVVLMYFSNA-TGDDEPTEEEKQAIAERIAPVGQVEVAPATESVAASAASEQVPSAQPVESGQTPALAENAPASGAENASPDDKGKAVYDGSCFACHTSGIAGAPKLSDKAAWEPRLAQGVETLVARAIQGFQGQGGIMPPKGGRADLADADVKAAVMYMV 183          
BLAST of mRNA_M-pyrifera_M_contig125692.5189.1 vs. uniprot
Match: A0A1F6UFW6_9PROT (Cytochrome c domain-containing protein n=1 Tax=Candidatus Muproteobacteria bacterium RBG_19FT_COMBO_61_10 TaxID=1817761 RepID=A0A1F6UFW6_9PROT)

HSP 1 Score: 115 bits (288), Expect = 1.170e-29
Identity = 71/167 (42.51%), Postives = 96/167 (57.49%), Query Frame = 1
Query:   16 DAAFVRNFSLVLVFLVVVGIVAFILAKVVNGAF-----QATVTDDEVATERLAPVGNANIGEPFVMGGAESTTAAAGAEPAAAAGPVDVGTATYGKICFACHDAGIGGAPKIGDKAAWADRLQKGPEMLVSNAINGFQGDAGIMPPKGGMASLTDDEVRAAVMHMLA 501
            D  FV++FS ++  L  + +V FILA++V  A      +    +D    ER+ PVG   +    VM     T  AAGA         D G ATY   C  CH AGI GAPK GDKAAWA R+ +G + L ++A+ GFQG AG+MP KGG A+L D +V+AAV +M++
Sbjct:    3 DRNFVKSFSGLVAALAALTVVIFILAQMVVSASNLNKDKTVAQNDAAVAERIKPVGEVAVSSNKVMDALIPTANAAGA---------DKGKATYDSSCSVCHGAGIAGAPKFGDKAAWAPRIAQGNDTLHTHALKGFQGKAGMMPAKGGNAALADADVKAAVDYMVS 160          
BLAST of mRNA_M-pyrifera_M_contig125692.5189.1 vs. uniprot
Match: A0A3M1DK99_9GAMM (Cytochrome c5 family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1DK99_9GAMM)

HSP 1 Score: 115 bits (288), Expect = 2.130e-29
Identity = 63/129 (48.84%), Postives = 82/129 (63.57%), Query Frame = 1
Query:  115 QATVTDDEVATERLAPVGNANIGEPFVMGGAESTTAAAGAEPAAAAGPVDVGTATYGKICFACHDAGIGGAPKIGDKAAWADRLQKGPEMLVSNAINGFQGDAGIMPPKGGMASLTDDEVRAAVMHMLA 501
            QA+  + +   ER +PVG              + TA A A   AAAGP D G   + ++C ACH  GI GAPK GDKAAWADR+ +G E L ++A+NGF G  G+MPPKGG ASLTD++V+AAV +M+A
Sbjct:   66 QASSEETKAVEERTSPVGEVT-----------TQTAQAEAPAQAAAGPAD-GEQVFKQVCTACHGMGIAGAPKFGDKAAWADRIAQGKETLYTHALNGFTGSKGMMPPKGGNASLTDEQVKAAVDYMVA 182          
BLAST of mRNA_M-pyrifera_M_contig125692.5189.1 vs. uniprot
Match: A0A2E8CJ37_9GAMM (Cytochrome c domain-containing protein n=1 Tax=Acidiferrobacteraceae bacterium TaxID=2024893 RepID=A0A2E8CJ37_9GAMM)

HSP 1 Score: 112 bits (280), Expect = 1.920e-28
Identity = 69/168 (41.07%), Postives = 92/168 (54.76%), Query Frame = 1
Query:   13 DDAAFVRNFSLVLVFLVVVGIVAFILAKVVNGAFQATVTDD-----EVATERLAPVGNANIGEPFVMGGAESTTAAAGAEPAAAAGPVDVGTATYGKICFACHDAGIGGAPKIGDKAAWADRLQKGPEMLVSNAINGFQGDAGIMPPKGGMASLTDDEVRAAVMHMLA 501
             D    R+ ++ LV  VV+ +    L  +  G     V D+     +     L PVG   +G+       +S T+    + AAAA  +D G   Y   C ACH AGI GAP++GD AAW DR+ +G + L S+AI GFQG AG+MP KGG   L+DDEV+AAV HMLA
Sbjct:    2 SDQKLARSSAIFLVVGVVLTLFLIFLGNLTAGTITERVRDERNAMVQTGASELQPVGQITVGD-------QSETSTQTTQVAAAATAID-GAGIYQGACMACHAAGIAGAPRVGDAAAWTDRIAQGADTLYSHAIEGFQGKAGMMPAKGGNMGLSDDEVKAAVDHMLA 161          
BLAST of mRNA_M-pyrifera_M_contig125692.5189.1 vs. uniprot
Match: A0A6M1Y9R8_9GAMM (Cytochrome c5 family protein n=2 Tax=Wenzhouxiangella sp. XN24 TaxID=2713569 RepID=A0A6M1Y9R8_9GAMM)

HSP 1 Score: 112 bits (280), Expect = 2.150e-28
Identity = 72/165 (43.64%), Postives = 96/165 (58.18%), Query Frame = 1
Query:   46 VLVFLVVVGIVAFILAKVVNGAFQATVTDDEVA-----TERLAPVG--------NANIGEPFVMGGAESTTAAAGAE-PAAAAGPVDVGTATYGKICFACHDAGIGGAPKIGDKAAWADRLQKGPEMLVSNAINGFQGDAGIMPPKGGMASLTDDEVRAAVMHML 498
            VL  LVV+ +  + L+  + G  Q     ++ A      ER+ P+G        N+ + +P   GGA +T AA  A  PAAAA  +D G   Y   C ACH  GI GAPK GD  AWA R+ KG + LV +AI GFQGDAG MPP+GG ++L+D+EVR AV +M+
Sbjct:    3 VLGILVVISVAIYALSSFIAGRTQEVHVREDAAFQQRIEERIEPIGQVAVAGQDNSGLRDP---GGAAATVAATSAPAPAAAAETLD-GEGVYNAACTACHGPGIAGAPKTGDATAWAPRIDKGMDTLVQHAIEGFQGDAGYMPPRGGYSNLSDEEVRDAVQYMV 163          
BLAST of mRNA_M-pyrifera_M_contig125692.5189.1 vs. uniprot
Match: UPI001F10C121 (c-type cytochrome n=2 Tax=Halomonas TaxID=2745 RepID=UPI001F10C121)

HSP 1 Score: 110 bits (276), Expect = 4.930e-28
Identity = 70/149 (46.98%), Postives = 91/149 (61.07%), Query Frame = 1
Query:   58 LVVVGIVAFILAKVVNGAFQATVTDDEVATERLAPVGN-ANIGEPFVMGGAESTTAAAGAEPAAAAGPVDVGTATYGKICFACHDAGIGGAPKIGDKAAWADRLQKGPEMLVSNAINGFQGDAGIMPPKGGMASLTDDEVRAAVMHMLA 501
            L++ G+ A  LA     + Q  +T D +A ERL PVG    +G+     G  +  A++G + AA+ G +D G A YG++C ACHD G  GAPK GD  AWA RL+KG E L  +AINGF      MP KGG  SL+DDEV+AAV H+LA
Sbjct:    6 LILGGLTALSLAATSAASAQNDMTHDAIA-ERLEPVGKLCMVGDDC---GTAAVAASSGGDQAASGGDID-GEAIYGQVCMACHDTGAAGAPKKGDTDAWAARLEKGTETLYDHAINGFNA----MPAKGGNPSLSDDEVKAAVDHLLA 145          
BLAST of mRNA_M-pyrifera_M_contig125692.5189.1 vs. uniprot
Match: A0A2N6CQP7_9GAMM (Cytochrome c5 family protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2N6CQP7_9GAMM)

HSP 1 Score: 110 bits (274), Expect = 1.200e-27
Identity = 61/118 (51.69%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  145 TERLAPVGNANIGEPFVMGGAESTTAAAGAEPAAAAGPVDVGTATYGKICFACHDAGIGGAPKIGDKAAWADRLQKGPEMLVSNAINGFQGDAGIMPPKGGMASLTDDEVRAAVMHML 498
            +ER+APVG        + G A+ + A A AE   A   V  G+  Y   C ACH  G GGAPKIGD AAW DR+ +G   LV +AINGFQG+AG MP KGG A LTDDEV +AV +M+
Sbjct:   41 SERIAPVGRV-----VLDGEADVSAAPAAAETVVA--QVRTGSEVYDMACMACHTTGAGGAPKIGDAAAWTDRISQGQATLVQHAINGFQGNAGYMPAKGGRADLTDDEVSSAVDYMI 151          
BLAST of mRNA_M-pyrifera_M_contig125692.5189.1 vs. uniprot
Match: A0A1F6TBI7_9PROT (Cytochrome c domain-containing protein n=1 Tax=Candidatus Muproteobacteria bacterium RBG_16_64_11 TaxID=1817758 RepID=A0A1F6TBI7_9PROT)

HSP 1 Score: 109 bits (272), Expect = 1.620e-27
Identity = 64/146 (43.84%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   73 IVAFILAKVVNGAFQA----TVTDDEVATERLAPVGNANIGEPFVMGGAESTTAAAGAEPAAAAGPVDVGTATYGKICFACHDAGIGGAPKIGDKAAWADRLQKGPEMLVSNAINGFQGDAGIMPPKGGMASLTDDEVRAAVMHML 498
            +V F+LA++V G        T + D+   ER+ PVG   +G   VM        AAG          D G +TY   C ACH  G+ GAPK+GDK AW DR+ KG + + +NAI GFQG AG MP KGG A+L D +V+AAV HM+
Sbjct:    3 VVLFVLAQMVVGGSNLKKTKTASADKGVAERIKPVGEVTVGAQ-VMDSLIPAANAAG----------DKGKSTYDASCAACHATGVAGAPKLGDKTAWKDRIAKGNDAIYTNAIKGFQGKAGFMPAKGGNAALADADVKAAVDHMV 137          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125692.5189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DIF8_9GAMM1.600e-4550.87Cytochrome c5 family protein n=1 Tax=Gammaproteoba... [more]
A0A1B4XC15_9GAMM6.040e-3445.73Cytochrome C n=1 Tax=Sulfuricaulis limicola TaxID=... [more]
A0A1S9CW55_9GAMM1.130e-2940.22Cytochrome c-555 n=1 Tax=Chromatiales bacterium US... [more]
A0A1F6UFW6_9PROT1.170e-2942.51Cytochrome c domain-containing protein n=1 Tax=Can... [more]
A0A3M1DK99_9GAMM2.130e-2948.84Cytochrome c5 family protein n=1 Tax=Gammaproteoba... [more]
A0A2E8CJ37_9GAMM1.920e-2841.07Cytochrome c domain-containing protein n=1 Tax=Aci... [more]
A0A6M1Y9R8_9GAMM2.150e-2843.64Cytochrome c5 family protein n=2 Tax=Wenzhouxiange... [more]
UPI001F10C1214.930e-2846.98c-type cytochrome n=2 Tax=Halomonas TaxID=2745 Rep... [more]
A0A2N6CQP7_9GAMM1.200e-2751.69Cytochrome c5 family protein n=1 Tax=Chromatiales ... [more]
A0A1F6TBI7_9PROT1.620e-2743.84Cytochrome c domain-containing protein n=1 Tax=Can... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125692contigM-pyrifera_M_contig125692:12..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score109.4
Seed ortholog evalue1.7e-21
Seed eggNOG ortholog983917.RGE_19220
Preferred nameccoP
KEGG koko:K00406
KEGG TC3.D.4.3
KEGG Pathwayko00190,ko01100,ko02020,map00190,map01100,map02020
KEGG ModuleM00156
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Cytochrome C oxidase, cbb3-type, subunit III
EggNOG OGs1KMNZ@119065,1MZBZ@1224,2VSPR@28216,COG3245@1,COG3245@2
COG Functional cat.C
Best tax levelunclassified Burkholderiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size501
Cds size501
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.4589813-CDS-M-pyrifera_M_contig125692:11..5121622815772.4589813-CDS-M-pyrifera_M_contig125692:11..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125692 12..512 +
1692277562.3380637-CDS-M-pyrifera_M_contig125692:11..5121692277562.3380637-CDS-M-pyrifera_M_contig125692:11..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125692 12..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125692.5189.1prot_M-pyrifera_M_contig125692.5189.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125692 12..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125692.5189.1

>prot_M-pyrifera_M_contig125692.5189.1 ID=prot_M-pyrifera_M_contig125692.5189.1|Name=mRNA_M-pyrifera_M_contig125692.5189.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
MSQVDDAAFVRNFSLVLVFLVVVGIVAFILAKVVNGAFQATVTDDEVATE
RLAPVGNANIGEPFVMGGAESTTAAAGAEPAAAAGPVDVGTATYGKICFA
CHDAGIGGAPKIGDKAAWADRLQKGPEMLVSNAINGFQGDAGIMPPKGGM
ASLTDDEVRAAVMHMLA
back to top

mRNA from alignment at M-pyrifera_M_contig125692:12..512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125692.5189.1 ID=mRNA_M-pyrifera_M_contig125692.5189.1|Name=mRNA_M-pyrifera_M_contig125692.5189.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig125692:12..512+ (Macrocystis pyrifera P11B4 male)
ATGAGCCAAGTAGATGACGCCGCGTTTGTGCGCAACTTCTCCCTAGTTCT CGTCTTTCTCGTGGTTGTGGGCATCGTTGCCTTCATCCTGGCGAAAGTGG TGAACGGCGCCTTCCAGGCGACGGTGACGGACGACGAGGTGGCTACCGAA CGACTCGCACCGGTTGGCAACGCAAATATCGGCGAACCGTTCGTGATGGG TGGTGCGGAATCGACAACGGCCGCAGCGGGTGCCGAGCCCGCCGCCGCCG CGGGTCCGGTCGACGTTGGCACGGCGACTTACGGCAAGATCTGCTTTGCC TGCCACGATGCCGGAATTGGCGGCGCACCGAAGATTGGCGACAAGGCGGC CTGGGCCGATCGCCTGCAAAAGGGTCCCGAAATGCTCGTCAGCAATGCGA TCAACGGCTTTCAGGGCGACGCCGGGATCATGCCACCGAAAGGCGGCATG GCGTCTTTGACTGACGACGAGGTCCGCGCCGCGGTGATGCATATGCTCGC T
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig125692:12..512+

>mRNA_M-pyrifera_M_contig125692.5189.1 ID=mRNA_M-pyrifera_M_contig125692.5189.1|Name=mRNA_M-pyrifera_M_contig125692.5189.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig125692:12..512+ (Macrocystis pyrifera P11B4 male)
ATGAGCCAAGTAGATGACGCCGCGTTTGTGCGCAACTTCTCCCTAGTTCT
CGTCTTTCTCGTGGTTGTGGGCATCGTTGCCTTCATCCTGGCGAAAGTGG
TGAACGGCGCCTTCCAGGCGACGGTGACGGACGACGAGGTGGCTACCGAA
CGACTCGCACCGGTTGGCAACGCAAATATCGGCGAACCGTTCGTGATGGG
TGGTGCGGAATCGACAACGGCCGCAGCGGGTGCCGAGCCCGCCGCCGCCG
CGGGTCCGGTCGACGTTGGCACGGCGACTTACGGCAAGATCTGCTTTGCC
TGCCACGATGCCGGAATTGGCGGCGCACCGAAGATTGGCGACAAGGCGGC
CTGGGCCGATCGCCTGCAAAAGGGTCCCGAAATGCTCGTCAGCAATGCGA
TCAACGGCTTTCAGGGCGACGCCGGGATCATGCCACCGAAAGGCGGCATG
GCGTCTTTGACTGACGACGAGGTCCGCGCCGCGGTGATGCATATGCTCGC
TATGAGCCAAGTAGATGACGCCGCGTTTGTGCGCAACTTCTCCCTAGTTC
TCGTCTTTCTCGTGGTTGTGGGCATCGTTGCCTTCATCCTGGCGAAAGTG
GTGAACGGCGCCTTCCAGGCGACGGTGACGGACGACGAGGTGGCTACCGA
ACGACTCGCACCGGTTGGCAACGCAAATATCGGCGAACCGTTCGTGATGG
GTGGTGCGGAATCGACAACGGCCGCAGCGGGTGCCGAGCCCGCCGCCGCC
GCGGGTCCGGTCGACGTTGGCACGGCGACTTACGGCAAGATCTGCTTTGC
CTGCCACGATGCCGGAATTGGCGGCGCACCGAAGATTGGCGACAAGGCGG
CCTGGGCCGATCGCCTGCAAAAGGGTCCCGAAATGCTCGTCAGCAATGCG
ATCAACGGCTTTCAGGGCGACGCCGGGATCATGCCACCGAAAGGCGGCAT
GGCGTCTTTGACTGACGACGAGGTCCGCGCCGCGGTGATGCATATGCTCG
CT
back to top