mRNA_M-pyrifera_M_contig12562.5182.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12562.5182.1
Unique NamemRNA_M-pyrifera_M_contig12562.5182.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12562.5182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12562contigM-pyrifera_M_contig12562:4329..5602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size361
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12562.5182.1prot_M-pyrifera_M_contig12562.5182.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12562 4329..5602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.0746195-CDS-M-pyrifera_M_contig12562:4328..44741622815772.0746195-CDS-M-pyrifera_M_contig12562:4328..4474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12562 4329..4474 +
1692277562.1166103-CDS-M-pyrifera_M_contig12562:4328..44741692277562.1166103-CDS-M-pyrifera_M_contig12562:4328..4474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12562 4329..4474 +
1622815772.0861216-CDS-M-pyrifera_M_contig12562:4975..51201622815772.0861216-CDS-M-pyrifera_M_contig12562:4975..5120Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12562 4976..5120 +
1692277562.128388-CDS-M-pyrifera_M_contig12562:4975..51201692277562.128388-CDS-M-pyrifera_M_contig12562:4975..5120Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12562 4976..5120 +
1622815772.0959225-CDS-M-pyrifera_M_contig12562:5533..56021622815772.0959225-CDS-M-pyrifera_M_contig12562:5533..5602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12562 5534..5602 +
1692277562.1365826-CDS-M-pyrifera_M_contig12562:5533..56021692277562.1365826-CDS-M-pyrifera_M_contig12562:5533..5602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12562 5534..5602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12562.5182.1

>prot_M-pyrifera_M_contig12562.5182.1 ID=prot_M-pyrifera_M_contig12562.5182.1|Name=mRNA_M-pyrifera_M_contig12562.5182.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
WDFGKSLRAAHIWHRRQRSRPPQRPQRVRNHPAPRRRRHPRTIRGYRSRY
PTYRAGDNLGRETTEWPMTVCGWNESTWGEGKKRRSAHRSSDVRLETKPT
KRSAWFNRTAGTTGSARTTG
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mRNA from alignment at M-pyrifera_M_contig12562:4329..5602+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12562.5182.1 ID=mRNA_M-pyrifera_M_contig12562.5182.1|Name=mRNA_M-pyrifera_M_contig12562.5182.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1274bp|location=Sequence derived from alignment at M-pyrifera_M_contig12562:4329..5602+ (Macrocystis pyrifera P11B4 male)
TGGGATTTTGGGAAATCCCTTAGGGCTGCACACATATGGCACCGGCGACA
GCGCAGCAGGCCACCGCAGCGCCCACAAAGAGTCAGGAACCATCCAGCAC
CACGTCGGCGACGTCATCCACGAACAATTCGTGGATATCGTTCAAGGTGA
GCGAAGAAAATCGAAAAAAGCTACGTCGGCCGCAAGGCCATGAAGCAACT
TCGTTTGGACGCCAGGCCACCGCACTCGTCCATTTGACGTTCCCGTTCGC
CGTTTCTTCTTGGATATGACAGCCAGCCTACTGCTGGATGTTCTCTAACC
ATTTTTTCGGCGAACGACTGTAACCAAGACGTAGACGTTGTCCTCAAAAT
TAGGCATGATGTTCAAAATCGTAACTTACCGCATGTTCAACTACAACAGC
AGTACAGACTCACCAGCACCGAGCAAAACTCGTGCGAGTTCGGACGAGTA
CCAGATATGTACGTACTGATGAGATGTCATCCTTCTGTCTCTACGGAAGA
AATCAAGCCACAGCAGCAGCTGAAGGGCACTTCGAGGTTGTGGTGGCGCG
TTAATGTACATACTTTTTCGCGCGATGTCGTAACTGCGTGTCGTTAACCG
TATGTGGAACCACGACTCGACCGACTAATTGTACGTGGATATCACAGATA
TCCTACATACCGGGCTGGAGATAACCTTGGGCGCGAGACGACGGAGTGGC
CAATGACTGTGTGTGGATGGAATGAGTCCACATGGGGCGAAGGCAAAAAA
AGGAGGTCGGCTCATCGTTCTAGTGACGTGCGTTTGGAGACGGTGAGTGT
CGTGTATCGATAGGTCGAGTGCAACTTTTCACACCTCGGACTGATCATGA
TCTATCTACAGCAGTAGTTCATCTAGTTCCCCATCTGCCGTCGCGATAGG
TTTAGCAGGATCTGCATTGCACAGATCCAACCCAGGAAACATGTGCTACT
CCCCTCGTACAGATGTTATAGCACGGGCCCAGCTATATGAGGTAGAGATT
ACAAGATTGGGAATAGATCTTCCTTGAAAGAACTACAGTAGACCATGAAC
TGGGCATGGATGATCTGTCCAGGGTGCGCAAGGTTTGGTTTATGATGGAG
TCAAGACCCATTGATCCGCGCCTGCAGATAACGTTGCAAGCCGTTTTGTC
AAATTAAGATAAACTCCTTCAATGTCGTTCCCACTGTCATCACAAGACGC
TGCAGAAACCGACGAAGCGAAGTGCATGGTTCAACAGGACGGCGGGGACG
ACGGGGTCAGCGAGGACGACGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12562:4329..5602+

>mRNA_M-pyrifera_M_contig12562.5182.1 ID=mRNA_M-pyrifera_M_contig12562.5182.1|Name=mRNA_M-pyrifera_M_contig12562.5182.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig12562:4329..5602+ (Macrocystis pyrifera P11B4 male)
TGGGATTTTGGGAAATCCCTTAGGGCTGCACACATATGGCACCGGCGACA
GCGCAGCAGGCCACCGCAGCGCCCACAAAGAGTCAGGAACCATCCAGCAC
CACGTCGGCGACGTCATCCACGAACAATTCGTGGATATCGTTCAAGTGGG
ATTTTGGGAAATCCCTTAGGGCTGCACACATATGGCACCGGCGACAGCGC
AGCAGGCCACCGCAGCGCCCACAAAGAGTCAGGAACCATCCAGCACCACG
TCGGCGACGTCATCCACGAACAATTCGTGGATATCGTTCAAGATATCCTA
CATACCGGGCTGGAGATAACCTTGGGCGCGAGACGACGGAGTGGCCAATG
ACTGTGTGTGGATGGAATGAGTCCACATGGGGCGAAGGCAAAAAAAGGAG
GTCGGCTCATCGTTCTAGTGACGTGCGTTTGGAGACGATATCCTACATAC
CGGGCTGGAGATAACCTTGGGCGCGAGACGACGGAGTGGCCAATGACTGT
GTGTGGATGGAATGAGTCCACATGGGGCGAAGGCAAAAAAAGGAGGTCGG
CTCATCGTTCTAGTGACGTGCGTTTGGAGACGAAACCGACGAAGCGAAGT
GCATGGTTCAACAGGACGGCGGGGACGACGGGGTCAGCGAGGACGACGGG
GAAACCGACGAAGCGAAGTGCATGGTTCAACAGGACGGCGGGGACGACGG
GGTCAGCGAGGACGACGGGG
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