mRNA_M-pyrifera_M_contig125580.5176.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125580.5176.1
Unique NamemRNA_M-pyrifera_M_contig125580.5176.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125580.5176.1 vs. uniprot
Match: A0A5A8D310_CAFRO (PH domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D310_CAFRO)

HSP 1 Score: 187 bits (476), Expect = 1.380e-53
Identity = 88/138 (63.77%), Postives = 106/138 (76.81%), Query Frame = 1 
Query:    4 EPLMTGWMTKLGERTASWKRRFFVATNAADNFAVFYFEREDHQDAPSRRKGAIHPCGYSVRALKREEDVKEFGEFSLVLEPHDRRRAWYLRCDSEEDRIRWKAVLRYASTHARAPLEGGLVEAAAFEDAFHRTRRRLG 417
            EPL  GWM KLG   ASW+RRFFVATN ADNF V+YFER++H D P+R++GAI PCG  VRAL+ E D K +GE +L L+P D RRAW+LRCDSE +R +W+AVL+YAS HA+ PL    VEAAAF DA+ R RRRLG
Sbjct:   71 EPLEKGWMVKLGAIKASWRRRFFVATNEADNFVVYYFERDEHADTPTRKRGAILPCGLRVRALRDEADRKLYGEHALCLDPGDGRRAWHLRCDSEAERSKWRAVLKYASLHAQPPLSADAVEAAAFCDAYERLRRRLG 208
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BLAST of mRNA_M-pyrifera_M_contig125580.5176.1 vs. uniprot
Match: A0A7S1GD61_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD61_9STRA)

HSP 1 Score: 157 bits (398), Expect = 8.710e-43
Identity = 74/138 (53.62%), Postives = 93/138 (67.39%), Query Frame = 1 
Query:    4 EPLMTGWMTKLGERTASWKRRFFVATNAADNFAVFYFEREDHQDAPSRRKGAIHPCGYSVRALKREEDVKEFGEFSLVLEPHDRRRAWYLRCDSEEDRIRWKAVLRYASTHARAPLEGGLVEAAAFEDAFHRTRRRLG 417
            EPL  GWMTKLG    +WKRR+FVATN ADNF V+YF +E+ +  PSR+KG I PCGY V+ L ++E+ +EFGEF+  L+P+ RRR WY+R D+ ED   W  V  YA   ARAPL    V + AF  A+  TR RLG
Sbjct:   88 EPLHEGWMTKLGAVKQNWKRRYFVATNEADNFRVYYFAKEEEKSDPSRKKGEIQPCGYKVKELTKDEEKEEFGEFAFTLKPYGRRRQWYIRADNAEDLKTWTGVFGYACQQARAPLNPDPVMSGAFMRAYTMTRWRLG 225
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BLAST of mRNA_M-pyrifera_M_contig125580.5176.1 vs. uniprot
Match: A0A7S3H582_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H582_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.070e-16
Identity = 51/139 (36.69%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:    4 EPLMTGWMTKLGERTASWKRRFFVATNAADNFAVFYFEREDHQDAPSRRKGAIHPCGYSVRALKREEDVKEFGEFSLVLEPHD-RRRAWYLRCDSEEDRIRWKAVLRYASTHARAPLEGGLVEAAAFEDAFHRTRRRLG 417
            + L +G++ K+G    SWKRRFFVA N ADN+ + Y+E E  +      KG I  CGY V A   EE V  +G F + L  +D  +R W  R  S+  +  W  VL +A   A+       V  A F+ AF  T+   G
Sbjct:   69 QDLKSGFVLKIGGNVKSWKRRFFVAKNKADNYRIVYYEDETMRKV----KGYICCCGYQVEAFSAEE-VSWYGHFGIKLTSYDGSKRQWLFRAYSDAAQTEWLEVLMHACKKAKPEPLKDPVYTATFKAAFSATKAAYG 202
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BLAST of mRNA_M-pyrifera_M_contig125580.5176.1 vs. uniprot
Match: A0A5A8C4C8_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C4C8_CAFRO)

HSP 1 Score: 80.9 bits (198), Expect = 2.730e-15
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   25 MTKLGERTASWKRRFFVATNAADNFAVFYFEREDHQDAPSRRKGAIHPCG 174
            M KLG   ASW+RRFFVATN ADNF V+YFER++H D P+R++GAI PCG
Sbjct:    1 MVKLGAIKASWRRRFFVATNEADNFVVYYFERDEHADTPTRKRGAILPCG 50
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125580.5176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5A8D310_CAFRO1.380e-5363.77PH domain-containing protein n=2 Tax=Cafeteria roe... [more]
A0A7S1GD61_9STRA8.710e-4353.62Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S3H582_9STRA5.070e-1636.69Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A5A8C4C8_CAFRO2.730e-1568.00Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125580contigM-pyrifera_M_contig125580:91..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.7965512-CDS-M-pyrifera_M_contig125580:90..5071622815771.7965512-CDS-M-pyrifera_M_contig125580:90..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125580 91..507 +
1692277561.9623518-CDS-M-pyrifera_M_contig125580:90..5071692277561.9623518-CDS-M-pyrifera_M_contig125580:90..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125580 91..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125580.5176.1prot_M-pyrifera_M_contig125580.5176.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125580 91..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125580.5176.1

>prot_M-pyrifera_M_contig125580.5176.1 ID=prot_M-pyrifera_M_contig125580.5176.1|Name=mRNA_M-pyrifera_M_contig125580.5176.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
MEPLMTGWMTKLGERTASWKRRFFVATNAADNFAVFYFEREDHQDAPSRR
KGAIHPCGYSVRALKREEDVKEFGEFSLVLEPHDRRRAWYLRCDSEEDRI
RWKAVLRYASTHARAPLEGGLVEAAAFEDAFHRTRRRLG
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mRNA from alignment at M-pyrifera_M_contig125580:91..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125580.5176.1 ID=mRNA_M-pyrifera_M_contig125580.5176.1|Name=mRNA_M-pyrifera_M_contig125580.5176.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig125580:91..507+ (Macrocystis pyrifera P11B4 male)
ATGGAGCCGCTCATGACCGGGTGGATGACCAAGCTTGGAGAGCGCACTGC
TTCGTGGAAGCGCCGTTTTTTCGTTGCGACGAATGCGGCCGACAATTTCG
CCGTGTTCTACTTTGAACGAGAAGACCACCAGGACGCGCCCTCCCGCAGG
AAGGGCGCCATTCACCCCTGCGGGTACTCTGTGCGTGCCTTGAAGCGAGA
AGAGGACGTAAAGGAGTTTGGAGAATTTTCGCTGGTGCTAGAGCCCCATG
ATCGCCGTCGGGCGTGGTACCTGCGTTGCGATTCGGAAGAAGACCGCATT
CGCTGGAAAGCTGTGTTGCGGTATGCCTCAACGCACGCACGTGCGCCGTT
GGAAGGGGGATTGGTGGAAGCGGCTGCGTTTGAAGACGCGTTCCATCGCA
CGAGGCGACGGTTGGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125580:91..507+

>mRNA_M-pyrifera_M_contig125580.5176.1 ID=mRNA_M-pyrifera_M_contig125580.5176.1|Name=mRNA_M-pyrifera_M_contig125580.5176.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig125580:91..507+ (Macrocystis pyrifera P11B4 male)
ATGGAGCCGCTCATGACCGGGTGGATGACCAAGCTTGGAGAGCGCACTGC
TTCGTGGAAGCGCCGTTTTTTCGTTGCGACGAATGCGGCCGACAATTTCG
CCGTGTTCTACTTTGAACGAGAAGACCACCAGGACGCGCCCTCCCGCAGG
AAGGGCGCCATTCACCCCTGCGGGTACTCTGTGCGTGCCTTGAAGCGAGA
AGAGGACGTAAAGGAGTTTGGAGAATTTTCGCTGGTGCTAGAGCCCCATG
ATCGCCGTCGGGCGTGGTACCTGCGTTGCGATTCGGAAGAAGACCGCATT
CGCTGGAAAGCTGTGTTGCGGTATGCCTCAACGCACGCACGTGCGCCGTT
GGAAGGGGGATTGGTGGAAGCGGCTGCGTTTGAAGACGCGTTCCATCGCA
CGAGGCGACGGTTGGGGATGGAGCCGCTCATGACCGGGTGGATGACCAAG
CTTGGAGAGCGCACTGCTTCGTGGAAGCGCCGTTTTTTCGTTGCGACGAA
TGCGGCCGACAATTTCGCCGTGTTCTACTTTGAACGAGAAGACCACCAGG
ACGCGCCCTCCCGCAGGAAGGGCGCCATTCACCCCTGCGGGTACTCTGTG
CGTGCCTTGAAGCGAGAAGAGGACGTAAAGGAGTTTGGAGAATTTTCGCT
GGTGCTAGAGCCCCATGATCGCCGTCGGGCGTGGTACCTGCGTTGCGATT
CGGAAGAAGACCGCATTCGCTGGAAAGCTGTGTTGCGGTATGCCTCAACG
CACGCACGTGCGCCGTTGGAAGGGGGATTGGTGGAAGCGGCTGCGTTTGA
AGACGCGTTCCATCGCACGAGGCGACGGTTGGGG
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