mRNA_M-pyrifera_M_contig125578.5175.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125578.5175.1
Unique NamemRNA_M-pyrifera_M_contig125578.5175.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A1G0G5Z5_9GAMM (Porin_4 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RBG_16_51_14 TaxID=1798265 RepID=A0A1G0G5Z5_9GAMM)

HSP 1 Score: 137 bits (345), Expect = 9.730e-36
Identity = 70/161 (43.48%), Postives = 95/161 (59.01%), Query Frame = 1
Query:    1 PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGAS---SDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTRCDATG-------NSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSEDG 453
            PN+NG  + VG+YDP+           ETD PRFEGE+ YTT + NG+  IW+DG WQ++E +  G S   +D     +GAG    +  + + GYYY GD L  +L F+        G          +++DNDG+YVQG+YTFNG+TKV  SYGES+EDG
Sbjct:  209 PNMNGFGLSVGIYDPAEPSLGAAPNQLETDVPRFEGEVMYTTAYTNGAASIWVDGTWQEVEVNAAGISMNGADYDREGWGAGAQASMSGFELTGYYYDGDNLETTLGFLTTPATSLAGVPNTTAPTQFEDSDNDGFYVQGTYTFNGRTKVGVSYGESNEDG 369          
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A6L8EHL5_9GAMM (Porin n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EHL5_9GAMM)

HSP 1 Score: 127 bits (320), Expect = 2.560e-32
Identity = 66/154 (42.86%), Postives = 94/154 (61.04%), Query Frame = 1
Query:    1 PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTR---CDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSEDG 453
            P++NG Q+ VG++DP   Q  +G  + ETDTP+F+ E T+ + F+ GSF  W   +WQ  E  +  ++SDV    +  G  +    +++ G YY G+ LG  L  +GG     C+  G  C+EADN+GYYVQ SYTFNG TK+ G YGES +DG
Sbjct:  193 PDMNGFQLSVGIFDP---QEPLGGNISETDTPQFQAEATFNSAFEGGSFSGWAGFIWQ--EQEIVASNSDVETVGWNIGAQVSAQGFSMTGSYYDGEALGSLLHNIGGGDGFGCNDMG--CKEADNEGYYVQASYTFNGATKIGGGYGESKQDG 339          
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A1G0K1H8_9GAMM (Porin_4 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0K1H8_9GAMM)

HSP 1 Score: 121 bits (303), Expect = 1.010e-29
Identity = 72/182 (39.56%), Postives = 96/182 (52.75%), Query Frame = 1
Query:    1 PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIE-----------------------------SSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGT---RCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSED 450
            P+ING  +EVG++DP       G    ETDTP+F+ E +YT  F+ GSF  W   LWQ+ E                              ++ GA+ D+    +  G D+K G +NV+G YY G+ LG  L  +GG     C  T  +C EADNDG Y+QGSYTFNGKTKV  S+G S++D
Sbjct:  189 PDINGFNLEVGIFDPQE-----GASPSETDTPQFQSEASYTYAFEGGSFNAWFGLLWQEQEITSSPGIAAIPDSFVIDPVTGAVTGIPGTPAIPGATGDIESFGWNVGVDIKFGGFNVVGSYYDGEALGALLFALGGGDAWACSTT--NCDEADNDGGYIQGSYTFNGKTKVGLSWGYSAQD 363          
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A2E6KRR6_9GAMM (Porin_4 domain-containing protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E6KRR6_9GAMM)

HSP 1 Score: 115 bits (288), Expect = 1.060e-27
Identity = 61/153 (39.87%), Postives = 92/153 (60.13%), Query Frame = 1
Query:    1 PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGA---SSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSED 450
            P+++GL +EVG++DP+ E +       +TD P+ + E  Y+T+FD GS  +W  G++Q++E    GA   + DVT  A   G +  +GP   +  +Y G+ LG S++         T  +C EAD DGYYVQG+YT  GKTK+  SYGES++D
Sbjct:  182 PDMSGLTLEVGVFDPN-EGSGGNTATFQTDVPQLQMEANYSTSFDGGSIALWAGGVYQEMEGRNAGAFNTTGDVTTQAINLGINANMGPMGFVASFYDGEALG-SVRVADTNSYHCTSTACTEADADGYYVQGTYTMGGKTKIGLSYGESNQD 332          
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A353VYK1_9GAMM (Porin_4 domain-containing protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A353VYK1_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 1.660e-27
Identity = 60/152 (39.47%), Postives = 93/152 (61.18%), Query Frame = 1
Query:    1 PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLG--RSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSED 450
            P+++G  +EVG++DP  ++   G+   ETDTP+F+ E +Y+T+FD GS  +W  GL Q++E +   A  +VT   F  G  +  G  +++G ++ G+ +G  R+L    G     +G +C EADNDGYY+Q  Y  NG T V  SYGES++D
Sbjct:  182 PDMSGFGIEVGIFDP--DENTAGSF--ETDTPQFQMEASYSTSFDGGSVMVWAGGLHQEMERT---AGGEVTSVGFNLGAKVSAGGLSLVGSWFDGEAIGTIRTLDSFSGNAFTCSGANCTEADNDGYYIQAMYNMNGATNVGLSYGESNQD 326          
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: D5C2T6_NITHN (Porin_4 domain-containing protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) TaxID=472759 RepID=D5C2T6_NITHN)

HSP 1 Score: 102 bits (254), Expect = 1.280e-22
Identity = 68/173 (39.31%), Postives = 95/173 (54.91%), Query Frame = 1
Query:    1 PNINGLQVEVGLYDPSR---EQTAVG-------------NILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSEDGYNADLN 471
            P++ G +V +   DPS+   E  AV              N + ETDTPR EGEI+Y  TF+NGS+QIW  G++Q+  S L G  +D+ V  + AG  ++   + + G YY G+GLG S   +     DATG   ++ DN G+ VQG YT   +TKV+ SYG S  D  + D N
Sbjct:  216 PDMMGFKVSLAGVDPSQICGEGFAVNPATGDVVPVASGVNCVTETDTPRGEGEISYAGTFNNGSYQIWGSGMYQN--SELQGTGNDIDVWGWTAGTQVQFMGFELTGSYYDGEGLGTSF-LLDADSLDATG---EKRDNKGWLVQGGYTIMDRTKVAASYGRSEADETSNDSN 382          
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: Q3J7Z2_NITOC (Porin_4 domain-containing protein n=3 Tax=Nitrosococcus oceani TaxID=1229 RepID=Q3J7Z2_NITOC)

HSP 1 Score: 100 bits (248), Expect = 8.520e-22
Identity = 63/159 (39.62%), Postives = 90/159 (56.60%), Query Frame = 1
Query:    1 PNINGLQVEVGLYDPSRE--QTAV----GNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGAS---SDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSED 450
            P++ G +V +   DPS+   + AV     N   ET++PR EGEI+Y  TF+NGS+Q+W  G++Q+++    G      D +V  + AG  ++   + V G YY G+GLG S   +     DATG   Q+ DN G+ VQG YT  G TKV+ SYG S  D
Sbjct:  216 PDMMGFKVSLAAVDPSKVCGEGAVFASGANCATETNSPRGEGEISYAGTFNNGSYQVWGSGMYQNVKRQSVGGGFGDDDFSVWGWTAGTQVQFMGFEVNGSYYDGEGLGTSF-LMDADSLDATG---QKRDNKGWLVQGGYTILGHTKVAASYGRSEAD 370          
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A4P7BYP6_9GAMM (Porin n=1 Tax=Nitrosococcus wardiae TaxID=1814290 RepID=A0A4P7BYP6_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 1.810e-21
Identity = 66/171 (38.60%), Postives = 93/171 (54.39%), Query Frame = 1
Query:    1 PNINGLQVEVGLYDPSR---EQTAV----GNILD---------ETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSEDGYNAD 465
            P++ G +V +   DPS+   E + +    GN++          ETDTPR EGEI+Y  TF+NGS+Q+W  G+WQD E       ++V    + AG  ++   + V G YY G+GLG S   +     DATG   ++ DN G+ VQG YT   +TKV+ SYG S  D  N D
Sbjct:  228 PDMMGFKVALAGVDPSQICGEGSVINPVTGNLIPVASGVNCATETDTPRAEGEISYAGTFNNGSYQVWGAGMWQDAEFQ---NGTEVEAWGWTAGTQIQFMGFEVTGSYYDGEGLGTSF-LLDADSLDATG---EKRDNRGWLVQGGYTIMDRTKVAASYGRSEADETNND 391          
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: D8KAG6_NITWC (Porin_4 domain-containing protein n=1 Tax=Nitrosococcus watsoni (strain C-113) TaxID=105559 RepID=D8KAG6_NITWC)

HSP 1 Score: 97.4 bits (241), Expect = 8.460e-21
Identity = 61/156 (39.10%), Postives = 88/156 (56.41%), Query Frame = 1
Query:    1 PNINGLQVEVGLYDPSR---EQTAVG---NILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSED 450
            P++ G +V +   DPS+   E   +    N   ET +PR EGE++Y  TF+NGS+Q+W  G+WQ++  S   +S+D  V  + AG  ++   + V G YY G+GLG S   +     DATG   Q+ DN G+  QG YT  G TK++ SYG S  D
Sbjct:  228 PDMMGFKVSLAAVDPSQVCGEGAGLAGGVNCARETQSPRGEGEVSYAGTFNNGSYQVWGSGMWQNVRYS-GNSSNDFNVWGWTAGAQVQFMGFEVNGSYYDGEGLGTSF-LMDADSLDATG---QKRDNRGWLAQGGYTILGHTKLAVSYGISRAD 378          
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Match: A0A7W1WXV4_9GAMM (Porin n=1 Tax=Marinobacterium sp. 3-1745 TaxID=2756129 RepID=A0A7W1WXV4_9GAMM)

HSP 1 Score: 84.0 bits (206), Expect = 4.080e-16
Identity = 50/148 (33.78%), Postives = 78/148 (52.70%), Query Frame = 1
Query:    1 PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQIWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLGRSL--QFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGE 438
            P  NG Q+ VG++DPS+  +         DTPRFEGE+TY T F+NG+F+ W+ GL+Q  +       + +  +    G ++KLG  ++    +  +G+  +    F+              A+ DGY VQGSYTF G  +++ SYGE
Sbjct:  192 PTKNGFQLAVGIFDPSKSDSDSSE-----DTPRFEGELTYATDFNNGAFKAWLGGLYQSSDDPDGTEVNSIDSTGVSYGANVKLGDLSLTASGFQSEGIHPAAIDNFI----------VSDSAEMDGYLVQGSYTF-GPNRIALSYGE 323          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125578.5175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1G0G5Z5_9GAMM9.730e-3643.48Porin_4 domain-containing protein n=1 Tax=Gammapro... [more]
A0A6L8EHL5_9GAMM2.560e-3242.86Porin n=1 Tax=Gammaproteobacteria bacterium TaxID=... [more]
A0A1G0K1H8_9GAMM1.010e-2939.56Porin_4 domain-containing protein n=1 Tax=Gammapro... [more]
A0A2E6KRR6_9GAMM1.060e-2739.87Porin_4 domain-containing protein n=1 Tax=Legionel... [more]
A0A353VYK1_9GAMM1.660e-2739.47Porin_4 domain-containing protein n=2 Tax=Gammapro... [more]
D5C2T6_NITHN1.280e-2239.31Porin_4 domain-containing protein n=1 Tax=Nitrosoc... [more]
Q3J7Z2_NITOC8.520e-2239.62Porin_4 domain-containing protein n=3 Tax=Nitrosoc... [more]
A0A4P7BYP6_9GAMM1.810e-2138.60Porin n=1 Tax=Nitrosococcus wardiae TaxID=1814290 ... [more]
D8KAG6_NITWC8.460e-2139.10Porin_4 domain-containing protein n=1 Tax=Nitrosoc... [more]
A0A7W1WXV4_9GAMM4.080e-1633.78Porin n=1 Tax=Marinobacterium sp. 3-1745 TaxID=275... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125578contigM-pyrifera_M_contig125578:43..513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score102.4
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog472759.Nhal_3741
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Membrane
EggNOG OGs1P7S0@1224,1S09X@1236,1X0UP@135613,COG3203@1,COG3203@2
COG Functional cat.M
Best tax levelChromatiales
Best eggNOG OGNA|NA|NA
Exons1
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.7580655-CDS-M-pyrifera_M_contig125578:42..5131622815771.7580655-CDS-M-pyrifera_M_contig125578:42..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125578 43..513 -
1692277561.9483862-CDS-M-pyrifera_M_contig125578:42..5131692277561.9483862-CDS-M-pyrifera_M_contig125578:42..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125578 43..513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125578.5175.1prot_M-pyrifera_M_contig125578.5175.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125578 43..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125578.5175.1

>prot_M-pyrifera_M_contig125578.5175.1 ID=prot_M-pyrifera_M_contig125578.5175.1|Name=mRNA_M-pyrifera_M_contig125578.5175.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
PNINGLQVEVGLYDPSREQTAVGNILDETDTPRFEGEITYTTTFDNGSFQ
IWMDGLWQDIESSLTGASSDVTVSAFGAGGDLKLGPWNVLGYYYTGDGLG
RSLQFVGGTRCDATGNSCQEADNDGYYVQGSYTFNGKTKVSGSYGESSED
GYNADLN
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mRNA from alignment at M-pyrifera_M_contig125578:43..513-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125578.5175.1 ID=mRNA_M-pyrifera_M_contig125578.5175.1|Name=mRNA_M-pyrifera_M_contig125578.5175.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig125578:43..513- (Macrocystis pyrifera P11B4 male)
CCGAATATCAACGGGCTGCAGGTCGAAGTTGGCCTGTACGATCCAAGCCG CGAGCAAACGGCAGTCGGAAACATCCTCGACGAAACGGATACCCCGCGCT TTGAAGGTGAGATCACCTACACGACGACGTTCGATAACGGCAGCTTCCAG ATCTGGATGGACGGTTTGTGGCAGGATATCGAATCCTCACTCACCGGCGC ATCGTCGGATGTCACCGTCAGTGCTTTCGGCGCTGGTGGCGACCTGAAAC TCGGGCCGTGGAACGTGCTTGGTTACTACTACACGGGTGACGGCCTCGGC CGCTCGCTGCAGTTTGTGGGTGGCACACGTTGCGACGCGACGGGTAACTC GTGTCAGGAAGCAGACAACGACGGCTACTACGTACAAGGCAGCTACACGT TCAACGGGAAGACGAAAGTGTCCGGCAGCTACGGTGAGTCCTCGGAAGAC GGTTACAATGCCGACTTGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125578:43..513-

>mRNA_M-pyrifera_M_contig125578.5175.1 ID=mRNA_M-pyrifera_M_contig125578.5175.1|Name=mRNA_M-pyrifera_M_contig125578.5175.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig125578:43..513- (Macrocystis pyrifera P11B4 male)
CCGAATATCAACGGGCTGCAGGTCGAAGTTGGCCTGTACGATCCAAGCCG
CGAGCAAACGGCAGTCGGAAACATCCTCGACGAAACGGATACCCCGCGCT
TTGAAGGTGAGATCACCTACACGACGACGTTCGATAACGGCAGCTTCCAG
ATCTGGATGGACGGTTTGTGGCAGGATATCGAATCCTCACTCACCGGCGC
ATCGTCGGATGTCACCGTCAGTGCTTTCGGCGCTGGTGGCGACCTGAAAC
TCGGGCCGTGGAACGTGCTTGGTTACTACTACACGGGTGACGGCCTCGGC
CGCTCGCTGCAGTTTGTGGGTGGCACACGTTGCGACGCGACGGGTAACTC
GTGTCAGGAAGCAGACAACGACGGCTACTACGTACAAGGCAGCTACACGT
TCAACGGGAAGACGAAAGTGTCCGGCAGCTACGGTGAGTCCTCGGAAGAC
GGTTACAATGCCGACTTGAACCCGAATATCAACGGGCTGCAGGTCGAAGT
TGGCCTGTACGATCCAAGCCGCGAGCAAACGGCAGTCGGAAACATCCTCG
ACGAAACGGATACCCCGCGCTTTGAAGGTGAGATCACCTACACGACGACG
TTCGATAACGGCAGCTTCCAGATCTGGATGGACGGTTTGTGGCAGGATAT
CGAATCCTCACTCACCGGCGCATCGTCGGATGTCACCGTCAGTGCTTTCG
GCGCTGGTGGCGACCTGAAACTCGGGCCGTGGAACGTGCTTGGTTACTAC
TACACGGGTGACGGCCTCGGCCGCTCGCTGCAGTTTGTGGGTGGCACACG
TTGCGACGCGACGGGTAACTCGTGTCAGGAAGCAGACAACGACGGCTACT
ACGTACAAGGCAGCTACACGTTCAACGGGAAGACGAAAGTGTCCGGCAGC
TACGGTGAGTCCTCGGAAGACGGTTACAATGCCGACTTGAAC
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