mRNA_M-pyrifera_M_contig125576.5173.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125576.5173.1
Unique NamemRNA_M-pyrifera_M_contig125576.5173.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A7X5WTD6_9ACTN (Histidine kinase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WTD6_9ACTN)

HSP 1 Score: 189 bits (480), Expect = 2.490e-58
Identity = 99/132 (75.00%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMVGRSEEPDD 396
            L+SVD +TVAGSVAVDLAHL+SELMENATQFSPPE  V+VVG       Y+LTLTDRGIGMS EQ+ TAN+TLAEPP+VGLDLSRSLGFTVVSRLAHRLG+ V L AG +GGV+A+V+IPAEM+G  E PDD
Sbjct:   45 LVSVDGATVAGSVAVDLAHLLSELMENATQFSPPEFMVDVVGALDETGVYRLTLTDRGIGMSPEQLQTANETLAEPPIVGLDLSRSLGFTVVSRLAHRLGITVTLLAGTDGGVSAMVSIPAEMIGSVEVPDD 176          
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A6G0A7E8_9ACTN (HAMP domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A7E8_9ACTN)

HSP 1 Score: 153 bits (386), Expect = 2.400e-40
Identity = 79/138 (57.25%), Postives = 105/138 (76.09%), Query Frame = 1
Query:    1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAE-MVGRSEEPDDAMPVL 411
            L+++D  T++G+VAVDLAH++SELMENATQFSPPE  VE+VG+R  D  Y L++ D+GIGM+ EQ+A AN+ LA+PPLVGL L+RSLGF VV RL+ R G+ VQL     GGVTA+VTIPA  ++    +P   +PV+
Sbjct:  514 LLALDEVTISGNVAVDLAHVLSELMENATQFSPPETMVEIVGHRNGDGGYVLSVADQGIGMAPEQLAEANRQLAKPPLVGLSLARSLGFIVVGRLSARFGIEVQLTTSPSGGVTALVTIPASHVIADDGDPTATLPVV 651          
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A3M2GFU0_ACTSX (Histidine kinase domain-containing protein (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GFU0_ACTSX)

HSP 1 Score: 147 bits (371), Expect = 9.050e-40
Identity = 74/114 (64.91%), Postives = 91/114 (79.82%), Query Frame = 1
Query:   31 GSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMV 372
            G+VAVDLAHL+SELMENATQFSPP+  VEV G+   D SYQLT+TD GIGMSA+Q+A AN+ L  PP++GL+L RSLGFTVVSR+A RLG+ VQ+     GGVTA+V +P  +V
Sbjct:    1 GNVAVDLAHLLSELMENATQFSPPDTRVEVAGHLAGDGSYQLTITDHGIGMSADQLARANEILQNPPVIGLELGRSLGFTVVSRIAARLGLGVQVTTSTHGGVTALVVLPPTLV 114          
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A7X7HRM2_9ACTN (Sensor histidine kinase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7HRM2_9ACTN)

HSP 1 Score: 149 bits (377), Expect = 4.590e-39
Identity = 77/124 (62.10%), Postives = 96/124 (77.42%), Query Frame = 1
Query:    1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMV 372
            L+S D   VA +VA DLAHL+SELMENAT FSPPE  VEVVG+R   D Y +++TD GIGMSAEQ++ AN++LA+PPLVGL LSRSLGF VV RLA R G+ V++     GGVTAVVT+P+ ++
Sbjct:  524 LLSFDEILVASNVAADLAHLLSELMENATNFSPPETRVEVVGHRTKSDGYVISVTDHGIGMSAEQVSEANESLAKPPLVGLALSRSLGFIVVGRLAGRHGITVRVMQSPSGGVTAVVTVPSSLI 647          
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: UPI001AA08217 (nitrate- and nitrite sensing domain-containing protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA08217)

HSP 1 Score: 149 bits (376), Expect = 5.860e-39
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMVG----RSEEPDDAMPVLTLDDQPTI 435
            L+++D +TV G+VAVDLAHL+SELMENAT FSPP+  VE+VG+R   + Y ++++D+GIGMSA+Q+A AN+ LA PPLVGL LSRSLGF V+ RLA R  + V+L A   GGVTA+VT+P ++V       +EP +      + D P +
Sbjct:  514 LLALDDATVGGNVAVDLAHLLSELMENATHFSPPDTMVEIVGHRAGAEGYIISVSDQGIGMSADQLAEANEQLARPPLVGLALSRSLGFIVIGRLAQRFDISVKLTASPSGGVTALVTLPPDLVTYPGEEGQEPAEPAAAPAVADVPAV 662          
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A5Q2REM1_9ACTN (HAMP domain-containing protein n=2 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2REM1_9ACTN)

HSP 1 Score: 146 bits (368), Expect = 6.930e-38
Identity = 74/127 (58.27%), Postives = 98/127 (77.17%), Query Frame = 1
Query:    1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMVGRS 381
            L+++D + V G+ A+D+AHL+SELMENAT FSPPE  VE++G++ AD +Y L+++D+GIGMS EQ A  NK LAEPPLVGL LSRSLGFTVV RLA R  + V+L +   GGVTA+VT+P  ++  S
Sbjct:  528 LVAMDDAVVTGAAAMDVAHLLSELMENATSFSPPETSVEILGHQNADGTYVLSISDQGIGMSDEQFAETNKLLAEPPLVGLTLSRSLGFTVVGRLAARFSIDVRLTSSPTGGVTALVTLPTAILESS 654          
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A8F4FUH0_9ACTN (HATPase_c domain-containing protein n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4FUH0_9ACTN)

HSP 1 Score: 143 bits (361), Expect = 1.840e-37
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 1
Query:    1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMV 372
            L+S D   VA + A DLAHL+SELMENAT FSPPE  VEVVG+R   D Y +++TD GIGMS+EQI  AN++LA+PPLVGL LSRSLGF VV RL+ R G+ V++     GGVTAVV+IP  +V
Sbjct:   45 LLSFDEILVASNAAADLAHLLSELMENATNFSPPETRVEVVGHRTKADGYVISVTDHGIGMSSEQILDANESLAKPPLVGLALSRSLGFIVVGRLSGRHGIAVRMMPSPSGGVTAVVSIPPSLV 168          
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: UPI001E4D1741 (nitrate- and nitrite sensing domain-containing protein n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E4D1741)

HSP 1 Score: 139 bits (350), Expect = 1.930e-35
Identity = 73/129 (56.59%), Postives = 96/129 (74.42%), Query Frame = 1
Query:    1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMVGRSEE 387
            L+++D +T+AG+VAVDLAH++SELMENAT FSPP+ +V V G R   + Y +T+TD GIGM+AEQ A AN  LA PPLVGL L+RSLGF VV RLA R G+ V ++A  +GG  A VT+P  +V  +E+
Sbjct:  520 LVALDQATIAGNVAVDLAHMLSELMENATHFSPPDTNVRVDGRRDDRNGYVVTVTDAGIGMNAEQRADANAQLARPPLVGLSLTRSLGFIVVGRLAARFGLSVAVSAAPDGGTVATVTLPYSVVEYAED 648          
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: A0A6N7FVA6_9ACTN (HAMP domain-containing protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FVA6_9ACTN)

HSP 1 Score: 138 bits (348), Expect = 3.150e-35
Identity = 73/139 (52.52%), Postives = 99/139 (71.22%), Query Frame = 1
Query:    1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMVGRSEEPDDAMPVLTL 417
            L+++D  ++  + AVD+AHL++ELMENATQFSPPE  VEVVG+R  D SY L+++D GIGMS+E +A AN+ LA PP++GL LSR+LGFTVV RLA R  + V+L     GGVTA+ TIP  ++        A P+ +L
Sbjct:  584 LVALDDLSIDAAAAVDIAHLLAELMENATQFSPPETHVEVVGHRTRDGSYVLSVSDEGIGMSSEHLAEANEQLAHPPVMGLALSRALGFTVVGRLASRHDLDVRLTPSPTGGVTALTTIPPALLVDGPSTAGATPIASL 722          
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Match: UPI001C62667D (nitrate- and nitrite sensing domain-containing protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62667D)

HSP 1 Score: 138 bits (348), Expect = 3.700e-35
Identity = 73/124 (58.87%), Postives = 92/124 (74.19%), Query Frame = 1
Query:    1 LMSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQLTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGVIVQLAAGVEGGVTAVVTIPAEMV 372
            L+ VD S V  +VA DLAHL+SELMENATQFSPP+  VEVVG+      Y +++TD+GIGMSA+Q+A AN  L  PPL+GL LSRSLGF VV RLA R G+ V+L     GGVT++VTIP+ ++
Sbjct:  538 LLDVDESEVISTVAADLAHLLSELMENATQFSPPDSRVEVVGHGNNGGGYTVSITDQGIGMSADQLAEANALLTRPPLLGLALSRSLGFIVVGRLAARHGIAVRLVPSPAGGVTSIVTIPSNVL 661          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125576.5173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WTD6_9ACTN2.490e-5875.00Histidine kinase (Fragment) n=1 Tax=Actinomycetia ... [more]
A0A6G0A7E8_9ACTN2.400e-4057.25HAMP domain-containing protein n=2 Tax=Bacteria Ta... [more]
A0A3M2GFU0_ACTSX9.050e-4064.91Histidine kinase domain-containing protein (Fragme... [more]
A0A7X7HRM2_9ACTN4.590e-3962.10Sensor histidine kinase n=1 Tax=Acidimicrobiales b... [more]
UPI001AA082175.860e-3952.35nitrate- and nitrite sensing domain-containing pro... [more]
A0A5Q2REM1_9ACTN6.930e-3858.27HAMP domain-containing protein n=2 Tax=Actinomarin... [more]
A0A8F4FUH0_9ACTN1.840e-3761.29HATPase_c domain-containing protein n=1 Tax=Aquiha... [more]
UPI001E4D17411.930e-3556.59nitrate- and nitrite sensing domain-containing pro... [more]
A0A6N7FVA6_9ACTN3.150e-3552.52HAMP domain-containing protein (Fragment) n=1 Tax=... [more]
UPI001C62667D3.700e-3558.87nitrate- and nitrite sensing domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125576contigM-pyrifera_M_contig125576:5..439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score108.6
Seed ortholog evalue2.4e-21
Seed eggNOG ortholog100226.SCO5544
Preferred namecvnA6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PhoQ Sensor
EggNOG OGs2GK6E@201174,COG0642@1,COG2205@2,COG4251@1,COG4251@2
COG Functional cat.T
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.6782584-UTR-M-pyrifera_M_contig125576:4..71622815771.6782584-UTR-M-pyrifera_M_contig125576:4..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125576 5..7 +
1692277561.9119139-UTR-M-pyrifera_M_contig125576:4..71692277561.9119139-UTR-M-pyrifera_M_contig125576:4..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125576 5..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.6909595-CDS-M-pyrifera_M_contig125576:7..4391622815771.6909595-CDS-M-pyrifera_M_contig125576:7..439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125576 8..439 +
1692277561.926569-CDS-M-pyrifera_M_contig125576:7..4391692277561.926569-CDS-M-pyrifera_M_contig125576:7..439Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125576 8..439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125576.5173.1prot_M-pyrifera_M_contig125576.5173.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125576 8..439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125576.5173.1

>prot_M-pyrifera_M_contig125576.5173.1 ID=prot_M-pyrifera_M_contig125576.5173.1|Name=mRNA_M-pyrifera_M_contig125576.5173.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
MSVDSSTVAGSVAVDLAHLMSELMENATQFSPPEIDVEVVGYRIADDSYQ
LTLTDRGIGMSAEQIATANKTLAEPPLVGLDLSRSLGFTVVSRLAHRLGV
IVQLAAGVEGGVTAVVTIPAEMVGRSEEPDDAMPVLTLDDQPTI
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mRNA from alignment at M-pyrifera_M_contig125576:5..439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125576.5173.1 ID=mRNA_M-pyrifera_M_contig125576.5173.1|Name=mRNA_M-pyrifera_M_contig125576.5173.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig125576:5..439+ (Macrocystis pyrifera P11B4 male)
CTGATGTCGGTCGATTCGTCGACCGTGGCCGGTTCGGTCGCCGTCGACCT CGCCCACCTGATGTCGGAGCTGATGGAGAACGCCACCCAGTTCTCGCCGC CCGAGATCGACGTCGAGGTCGTGGGCTATCGCATCGCCGACGACAGCTAC CAGCTCACACTGACCGACCGCGGCATCGGCATGAGCGCCGAACAGATCGC CACCGCCAACAAGACGCTGGCCGAACCGCCGCTCGTCGGCCTCGACCTGA GCCGTTCGCTCGGTTTCACCGTGGTCTCCCGGCTCGCCCATCGTCTCGGT GTCATCGTGCAGCTGGCCGCCGGTGTCGAGGGCGGCGTCACCGCCGTCGT CACCATCCCGGCGGAAATGGTCGGACGCTCCGAGGAGCCCGACGACGCCA TGCCGGTGCTCACTCTCGACGATCAGCCGACCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125576:5..439+

>mRNA_M-pyrifera_M_contig125576.5173.1 ID=mRNA_M-pyrifera_M_contig125576.5173.1|Name=mRNA_M-pyrifera_M_contig125576.5173.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig125576:5..439+ (Macrocystis pyrifera P11B4 male)
ATGTCGGTCGATTCGTCGACCGTGGCCGGTTCGGTCGCCGTCGACCTCGC
CCACCTGATGTCGGAGCTGATGGAGAACGCCACCCAGTTCTCGCCGCCCG
AGATCGACGTCGAGGTCGTGGGCTATCGCATCGCCGACGACAGCTACCAG
CTCACACTGACCGACCGCGGCATCGGCATGAGCGCCGAACAGATCGCCAC
CGCCAACAAGACGCTGGCCGAACCGCCGCTCGTCGGCCTCGACCTGAGCC
GTTCGCTCGGTTTCACCGTGGTCTCCCGGCTCGCCCATCGTCTCGGTGTC
ATCGTGCAGCTGGCCGCCGGTGTCGAGGGCGGCGTCACCGCCGTCGTCAC
CATCCCGGCGGAAATGGTCGGACGCTCCGAGGAGCCCGACGACGCCATGC
CGGTGCTCACTCTCGACGATCAGCCGACCATCATGTCGGTCGATTCGTCG
ACCGTGGCCGGTTCGGTCGCCGTCGACCTCGCCCACCTGATGTCGGAGCT
GATGGAGAACGCCACCCAGTTCTCGCCGCCCGAGATCGACGTCGAGGTCG
TGGGCTATCGCATCGCCGACGACAGCTACCAGCTCACACTGACCGACCGC
GGCATCGGCATGAGCGCCGAACAGATCGCCACCGCCAACAAGACGCTGGC
CGAACCGCCGCTCGTCGGCCTCGACCTGAGCCGTTCGCTCGGTTTCACCG
TGGTCTCCCGGCTCGCCCATCGTCTCGGTGTCATCGTGCAGCTGGCCGCC
GGTGTCGAGGGCGGCGTCACCGCCGTCGTCACCATCCCGGCGGAAATGGT
CGGACGCTCCGAGGAGCCCGACGACGCCATGCCGGTGCTCACTCTCGACG
ATCAGCCGACCATC
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