mRNA_M-pyrifera_M_contig12557.5171.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12557.5171.1 vs. uniprot
Match: A0A6H5KC01_9PHAE (SUZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC01_9PHAE) HSP 1 Score: 162 bits (411), Expect = 9.210e-39 Identity = 227/448 (50.67%), Postives = 248/448 (55.36%), Query Frame = 1
Query: 1 GFGSGRGRPIPGGGXXXXXXXXXXXXXGERGGRV---GGLQQGPDGNNADRSDLXXXXXXXXXXXXXXXXXXXXXXXXXXPPVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHPQHPMMAAP--GPHGQA-HAMMAMPAAMQG-QLRGQMPGQPGVLVVQQPQQXXXXXXXXXXXXXXXXXXXXXXXXXGPAAYGAPVPGHPIYAP-GFIDPAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIAYLHPQQQAVAGVLPAHQQGQQPQAQVXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGLLQTPHMQTGVAVAGGYMTAQEYYGAHQ--QAIFY-QDPNMPGMAMGYGVQHAQI 1311
GFGSGRG+P+PG XXXXXXX GERG R G +GP A XXXXX P VNAGEWKGQRGMQRNRMAEKSDPDFVRNYD+YRPSFAPYRQLADPGG XXXXXXXXXXX QQHP H MM+A HGQA HAMMA+PA MQG QLRGQMPGQ + XXXXXXXXXXX P+ YGA VPGH +YA G++DPAQA XXXXXXXXXXXXXX XXX XXXXXXXXX XXXXXX Q AH+ GQQ Q XXXXXXXQ GLLQTP + T +A+ GYMTAQ++YGA Q QAI+Y QDP+M G+AMGY VQ +
Sbjct: 520 GFGSGRGKPVPGXXXXXXXXXAAAGREGERGVREEGGAGAAEGPVSXGA---------------------XXXXXRGSRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDHYRPSFAPYRQLADPGGGGGGGRGXXXXXXXXXXXQQPQPSPRLL--QQHP-HAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQMEAQAM-----------------XXXXXXXXXXXGGAPSVYGAAVPGHAMYAAQGYVDPAQAAXXXXXXXXXXXXXXAPGVSXXXGSTMRGQXXXXXXXXXQPRQHXXXXXXXXXXXXXXXQPXXXXPAAHR-GQQQQP------------------------------------------XXXXXXXQTGLLQTPQVPTSLAMTSGYMTAQDFYGAQQPQQAIYYPQDPSMQGVAMGYTVQQPHL 883
BLAST of mRNA_M-pyrifera_M_contig12557.5171.1 vs. uniprot
Match: D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI) HSP 1 Score: 137 bits (345), Expect = 2.140e-30 Identity = 144/200 (72.00%), Postives = 149/200 (74.50%), Query Frame = 1
Query: 1 GFGSGRGRPIPGGGXXXXXXXXXXXXXGERGGRVGGLQQ-GPDGNNADRSDLXXXXXXXXXXXXXXXXXXXXXXXXXXPPVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHPQHPMMAAP--GPHGQA-HAMMAMPAAMQG-QLRGQMPGQ 585
GFGSGRG+P+PGGGXXXXX GGR GGLQQ G DG + XXXXXX XXXXXXXXXXX P VNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGG XXXXXXXXXXXXXXXXXXXXXXXXX MM+A HGQA HAMMA+PA MQG QLRGQMPGQ
Sbjct: 629 GFGSGRGKPVPGGGXXXXX-----------GGRAGGLQQQGSDGPDRGDYGRGXXXXXXGPGGRMXXXXXXXXXXXRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGGRGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXA---MMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ 814 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12557.5171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12557.5171.1 >prot_M-pyrifera_M_contig12557.5171.1 ID=prot_M-pyrifera_M_contig12557.5171.1|Name=mRNA_M-pyrifera_M_contig12557.5171.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=561bp GFGSGRGRPIPGGGRGSNGGGGGGGGAGERGGRVGGLQQGPDGNNADRSDback to top mRNA from alignment at M-pyrifera_M_contig12557:934..6498- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12557.5171.1 ID=mRNA_M-pyrifera_M_contig12557.5171.1|Name=mRNA_M-pyrifera_M_contig12557.5171.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5565bp|location=Sequence derived from alignment at M-pyrifera_M_contig12557:934..6498- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12557:934..6498- >mRNA_M-pyrifera_M_contig12557.5171.1 ID=mRNA_M-pyrifera_M_contig12557.5171.1|Name=mRNA_M-pyrifera_M_contig12557.5171.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3366bp|location=Sequence derived from alignment at M-pyrifera_M_contig12557:934..6498- (Macrocystis pyrifera P11B4 male)back to top |