mRNA_M-pyrifera_M_contig125555.5166.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125555.5166.1
Unique NamemRNA_M-pyrifera_M_contig125555.5166.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125555.5166.1 vs. uniprot
Match: A0A518AEI6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AEI6_9PLAN)

HSP 1 Score: 191 bits (485), Expect = 2.140e-61
Identity = 94/103 (91.26%), Postives = 99/103 (96.12%), Query Frame = 1
Query:    1 MLQRQEIMLIRAALQFWYEEMDLDDADMFAIYSGGPRIKPFWRGEDIQRLRQQLIAARLRYAVCQSDANRVKIPHLFDTSAAATQAMADDNDQLGVVLVDSPA 309
            MLQRQEIMLIRAALQFWYEEMDLDDA++FAIYSGGPRIKP WRGEDIQRLRQQLIAARLRYAVCQSDA R+KIPHLFDT AAA QAMADD+DQLGVVLVD+PA
Sbjct:    1 MLQRQEIMLIRAALQFWYEEMDLDDAEIFAIYSGGPRIKPAWRGEDIQRLRQQLIAARLRYAVCQSDATRIKIPHLFDTPAAANQAMADDSDQLGVVLVDAPA 103          
BLAST of mRNA_M-pyrifera_M_contig125555.5166.1 vs. uniprot
Match: A0A517WAY9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WAY9_9PLAN)

HSP 1 Score: 186 bits (473), Expect = 1.450e-59
Identity = 92/103 (89.32%), Postives = 97/103 (94.17%), Query Frame = 1
Query:    1 MLQRQEIMLIRAALQFWYEEMDLDDADMFAIYSGGPRIKPFWRGEDIQRLRQQLIAARLRYAVCQSDANRVKIPHLFDTSAAATQAMADDNDQLGVVLVDSPA 309
            MLQRQEIMLIRAALQFWYEEMDLDDADMFAIYSGGPRIKP WRGEDIQRLRQQLIAARLRYAVCQSDA RVK PHLF+T AAATQAM D+ D+LGV+LVD+PA
Sbjct:    1 MLQRQEIMLIRAALQFWYEEMDLDDADMFAIYSGGPRIKPSWRGEDIQRLRQQLIAARLRYAVCQSDATRVKFPHLFETPAAATQAMTDNLDRLGVILVDTPA 103          
BLAST of mRNA_M-pyrifera_M_contig125555.5166.1 vs. uniprot
Match: A0A517QEH6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QEH6_9PLAN)

HSP 1 Score: 177 bits (450), Expect = 4.660e-56
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 1
Query:    1 MLQRQEIMLIRAALQFWYEEMDLDDADMFAIYSGGPRIKPFWRGEDIQRLRQQLIAARLRYAVCQSDANRVKIPHLFDTSAAATQAMADDNDQLGVVLVDSPAV 312
            ML +QEIMLIRAALQFWYEEMDLDDAD+FAIYSGGPRIKP WR EDIQRLRQQL  ARLRYAVC SDA RVKIPHLFDT AAA QAMAD +D+LGVVLVD+PAV
Sbjct:    1 MLSKQEIMLIRAALQFWYEEMDLDDADLFAIYSGGPRIKPSWRVEDIQRLRQQLNEARLRYAVCHSDATRVKIPHLFDTPAAANQAMADGSDRLGVVLVDAPAV 104          
BLAST of mRNA_M-pyrifera_M_contig125555.5166.1 vs. uniprot
Match: A0A2E2C6H8_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C6H8_9PLAN)

HSP 1 Score: 158 bits (399), Expect = 2.790e-48
Identity = 81/104 (77.88%), Postives = 88/104 (84.62%), Query Frame = 1
Query:    1 MLQRQEIMLIRAALQFWYEEMDLDDADMFAIYSGGPRIKPFWRGEDIQRLRQQLIAARLRYAVCQSDANRVKIPHLFDTSAAATQAMADDNDQLGVVLVDSPAV 312
            M+QRQEIMLIRAALQFWYEEMDL+DAD+FAIYSGG RIKP WR EDIQRLRQQL  ARLRY VCQ DA  VK P LF T  AA QAM D++DQLGVVLV++PAV
Sbjct:    1 MIQRQEIMLIRAALQFWYEEMDLEDADLFAIYSGGSRIKPPWREEDIQRLRQQLNEARLRYVVCQHDAACVKNPRLFSTPDAANQAMTDNSDQLGVVLVNTPAV 104          
BLAST of mRNA_M-pyrifera_M_contig125555.5166.1 vs. uniprot
Match: A0A517WWJ1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WWJ1_9PLAN)

HSP 1 Score: 158 bits (399), Expect = 2.790e-48
Identity = 79/103 (76.70%), Postives = 85/103 (82.52%), Query Frame = 1
Query:    1 MLQRQEIMLIRAALQFWYEEMDLDDADMFAIYSGGPRIKPFWRGEDIQRLRQQLIAARLRYAVCQSDANRVKIPHLFDTSAAATQAMADDNDQLGVVLVDSPA 309
            MLQRQEI LIRAALQFWYEEMDL D DM A+YSGG RI P WRGEDIQRLRQQLI ARLRYAVC  DA +VKIP LF +  AA Q M DD+DQLGVVL+D+PA
Sbjct:    1 MLQRQEITLIRAALQFWYEEMDLKDTDMLAVYSGGLRIDPPWRGEDIQRLRQQLIQARLRYAVCHCDATKVKIPRLFGSPDAANQEMTDDSDQLGVVLIDAPA 103          
BLAST of mRNA_M-pyrifera_M_contig125555.5166.1 vs. uniprot
Match: A0A6I6AHI3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AHI3_9PLAN)

HSP 1 Score: 148 bits (374), Expect = 1.750e-44
Identity = 74/104 (71.15%), Postives = 88/104 (84.62%), Query Frame = 1
Query:    1 MLQRQEIMLIRAALQFWYEEMDLDDADMFAIYSGGPRIKPFWRGEDIQRLRQQLIAARLRYAVCQSDANRVKIPHLFDTSAAATQAMADDNDQLGVVLVDSPAV 312
            M+Q+Q+ MLIR ALQFWYEEMDL DAD+F IYSGGPRIKP W+ EDIQ+LRQQL+AARLRYAVC+SDA  +K P LF++   A QAMAD +D+LGVVLV +PAV
Sbjct:    1 MIQKQDFMLIRGALQFWYEEMDLKDADVFTIYSGGPRIKPSWQEEDIQQLRQQLLAARLRYAVCRSDAASIKTPRLFNSPEVARQAMADASDRLGVVLV-APAV 103          
BLAST of mRNA_M-pyrifera_M_contig125555.5166.1 vs. uniprot
Match: A0A518ABX8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ABX8_9PLAN)

HSP 1 Score: 146 bits (369), Expect = 1.040e-43
Identity = 73/104 (70.19%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 MLQRQEIMLIRAALQFWYEEMDLDDADMFAIYSGGPRIKPFWRGEDIQRLRQQLIAARLRYAVCQSDANRVKIPHLFDTSAAATQAMADDNDQLGVVLVDSPAV 312
            MLQRQEIMLIRAALQFWYEEMDL+D  M AIYSG PRI   W+  DIQ+LRQQL+AARLRYAVC+ DA  VKIP LF+T  AA+Q+  D++DQLG+VLV  PA+
Sbjct:    1 MLQRQEIMLIRAALQFWYEEMDLEDLKMLAIYSGDPRIIQKWKKADIQQLRQQLLAARLRYAVCRPDATSVKIPRLFNTPEAASQSRTDNSDQLGIVLVPDPAI 104          
BLAST of mRNA_M-pyrifera_M_contig125555.5166.1 vs. uniprot
Match: A0A517PVW4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PVW4_9PLAN)

HSP 1 Score: 144 bits (363), Expect = 8.540e-43
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 1
Query:    1 MLQRQEIMLIRAALQFWYEEMDLDDADMFAIYSGGPRIKPFWRGEDIQRLRQQLIAARLRYAVCQSDANRVKIPHLFDTSAAATQAMADDNDQLGVVLVDSPA 309
            MLQ+QEIMLIRAAL+FWYEEMDL+D +M AIYSG PRI P WR  DIQ LRQQL+ ARLRYAVC+SDA  VKI  LF+T  AA+QAMAD +D+LGVV++  PA
Sbjct:    1 MLQKQEIMLIRAALRFWYEEMDLEDPEMLAIYSGVPRIIPKWRKADIQELRQQLLVARLRYAVCRSDATSVKILRLFNTPEAASQAMADASDRLGVVMLTDPA 103          
BLAST of mRNA_M-pyrifera_M_contig125555.5166.1 vs. uniprot
Match: A0A2E7KJL3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7KJL3_9PLAN)

HSP 1 Score: 136 bits (342), Expect = 1.100e-39
Identity = 67/96 (69.79%), Postives = 79/96 (82.29%), Query Frame = 1
Query:   22 MLIRAALQFWYEEMDLDDADMFAIYSGGPRIKPFWRGEDIQRLRQQLIAARLRYAVCQSDANRVKIPHLFDTSAAATQAMADDNDQLGVVLVDSPA 309
            MLIRAALQFWYEEMDL+D +M AIYSGGP+I P W+  DIQ+LRQQL+AARLRYAVC+SDA  VK P LF++  AA+QAM   +DQLG+VLV  PA
Sbjct:    1 MLIRAALQFWYEEMDLEDPEMLAIYSGGPKIIPKWKKADIQQLRQQLLAARLRYAVCRSDAASVKTPRLFNSPEAASQAMVVASDQLGIVLVTDPA 96          
BLAST of mRNA_M-pyrifera_M_contig125555.5166.1 vs. uniprot
Match: A0A350KJM2_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A350KJM2_9PLAN)

HSP 1 Score: 132 bits (333), Expect = 2.570e-38
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 1
Query:   22 MLIRAALQFWYEEMDLDDADMFAIYSGGPRIKPFWRGEDIQRLRQQLIAARLRYAVCQSDANRVKIPHLFDTSAAATQAMADDNDQLGVVLVDSPAV 312
            MLIRAALQFW EEMDL+DA++F +Y+  P+I+P W  EDIQRLRQQL+AARLRYAVCQ DA  VK P LF+T  AA+Q   DD+D+LGVVLV  P V
Sbjct:    1 MLIRAALQFWCEEMDLEDANLFEVYASSPQIEPTWGQEDIQRLRQQLLAARLRYAVCQHDAASVKTPQLFNTPEAASQEKTDDSDRLGVVLVAEPEV 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125555.5166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A518AEI6_9PLAN2.140e-6191.26Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A517WAY9_9PLAN1.450e-5989.32Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517QEH6_9PLAN4.660e-5685.58Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A2E2C6H8_9PLAN2.790e-4877.88Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A517WWJ1_9PLAN2.790e-4876.70Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A6I6AHI3_9PLAN1.750e-4471.15Uncharacterized protein n=2 Tax=Gimesia benthica T... [more]
A0A518ABX8_9PLAN1.040e-4370.19Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A517PVW4_9PLAN8.540e-4370.87Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A2E7KJL3_9PLAN1.100e-3969.79Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=... [more]
A0A350KJM2_9PLAN2.570e-3867.01Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125555contigM-pyrifera_M_contig125555:74..388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.2395084-CDS-M-pyrifera_M_contig125555:73..3881622815771.2395084-CDS-M-pyrifera_M_contig125555:73..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125555 74..388 -
1692277561.6697023-CDS-M-pyrifera_M_contig125555:73..3881692277561.6697023-CDS-M-pyrifera_M_contig125555:73..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125555 74..388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125555.5166.1prot_M-pyrifera_M_contig125555.5166.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125555 74..388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125555.5166.1

>prot_M-pyrifera_M_contig125555.5166.1 ID=prot_M-pyrifera_M_contig125555.5166.1|Name=mRNA_M-pyrifera_M_contig125555.5166.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MLQRQEIMLIRAALQFWYEEMDLDDADMFAIYSGGPRIKPFWRGEDIQRL
RQQLIAARLRYAVCQSDANRVKIPHLFDTSAAATQAMADDNDQLGVVLVD
SPAV*
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mRNA from alignment at M-pyrifera_M_contig125555:74..388-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125555.5166.1 ID=mRNA_M-pyrifera_M_contig125555.5166.1|Name=mRNA_M-pyrifera_M_contig125555.5166.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig125555:74..388- (Macrocystis pyrifera P11B4 male)
ATGCTACAGCGACAAGAAATCATGTTGATTAGAGCTGCCCTGCAGTTCTG GTATGAAGAAATGGATCTCGACGATGCAGACATGTTCGCGATCTATTCTG GTGGCCCCAGAATCAAGCCATTCTGGCGGGGAGAAGACATTCAGCGGTTG CGCCAGCAGTTGATCGCGGCACGGCTGCGATATGCTGTCTGTCAAAGTGA TGCGAACAGGGTCAAGATTCCCCACCTGTTTGACACTTCCGCAGCAGCTA CTCAGGCGATGGCTGATGACAATGATCAACTGGGCGTGGTTCTGGTAGAT TCACCAGCAGTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125555:74..388-

>mRNA_M-pyrifera_M_contig125555.5166.1 ID=mRNA_M-pyrifera_M_contig125555.5166.1|Name=mRNA_M-pyrifera_M_contig125555.5166.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig125555:74..388- (Macrocystis pyrifera P11B4 male)
ATGCTACAGCGACAAGAAATCATGTTGATTAGAGCTGCCCTGCAGTTCTG
GTATGAAGAAATGGATCTCGACGATGCAGACATGTTCGCGATCTATTCTG
GTGGCCCCAGAATCAAGCCATTCTGGCGGGGAGAAGACATTCAGCGGTTG
CGCCAGCAGTTGATCGCGGCACGGCTGCGATATGCTGTCTGTCAAAGTGA
TGCGAACAGGGTCAAGATTCCCCACCTGTTTGACACTTCCGCAGCAGCTA
CTCAGGCGATGGCTGATGACAATGATCAACTGGGCGTGGTTCTGGTAGAT
TCACCAGCAGTCTGAATGCTACAGCGACAAGAAATCATGTTGATTAGAGC
TGCCCTGCAGTTCTGGTATGAAGAAATGGATCTCGACGATGCAGACATGT
TCGCGATCTATTCTGGTGGCCCCAGAATCAAGCCATTCTGGCGGGGAGAA
GACATTCAGCGGTTGCGCCAGCAGTTGATCGCGGCACGGCTGCGATATGC
TGTCTGTCAAAGTGATGCGAACAGGGTCAAGATTCCCCACCTGTTTGACA
CTTCCGCAGCAGCTACTCAGGCGATGGCTGATGACAATGATCAACTGGGC
GTGGTTCTGGTAGATTCACCAGCAGTCTGA
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