mRNA_M-pyrifera_M_contig125544.5161.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125544.5161.1
Unique NamemRNA_M-pyrifera_M_contig125544.5161.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125544.5161.1 vs. uniprot
Match: A0A8C5ZIK6_MARMA (Mitochondrial fission process protein 1 n=6 Tax=Marmotini TaxID=337730 RepID=A0A8C5ZIK6_MARMA)

HSP 1 Score: 65.1 bits (157), Expect = 1.690e-11
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 GYANELGEAFRYIVPRLVT-PSYLVASAYVLADAVDKGKKAMKVRGFE-GLWEGMKIVLLVTFSW 189
            GYANE+GEAFR +VP+ V   SY V+S+YVLADA+DKGKKA +V+G E G    + + ++ TF W
Sbjct:   23 GYANEVGEAFRSLVPKAVVWLSYGVSSSYVLADAIDKGKKAGEVQGLEAGRSTRVTVAVVDTFVW 87
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BLAST of mRNA_M-pyrifera_M_contig125544.5161.1 vs. uniprot
Match: A0A8D2I724_UROPR (Mitochondrial fission process protein 1 n=2 Tax=Marmotini TaxID=337730 RepID=A0A8D2I724_UROPR)

HSP 1 Score: 65.1 bits (157), Expect = 2.290e-11
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 GYANELGEAFRYIVPRLVT-PSYLVASAYVLADAVDKGKKAMKVRGFE-GLWEGMKIVLLVTFSW 189
            GYANE+GEAFR +VP+ V   SY V+S+YVLADA+DKGKKA +V+G E G    + + ++ TF W
Sbjct:   23 GYANEVGEAFRSLVPKAVVWLSYGVSSSYVLADAIDKGKKAXEVQGPEAGRSTSVTVAVVDTFVW 87
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BLAST of mRNA_M-pyrifera_M_contig125544.5161.1 vs. uniprot
Match: G4YFS8_PHYSP (Mitochondrial fission process protein 1 (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YFS8_PHYSP)

HSP 1 Score: 62.8 bits (151), Expect = 1.030e-10
Identity = 32/49 (65.31%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 GYANELGEAFRYIVPRLVTPSYLVASAYVLADAVDKGKKAMKVRGFEGL 147
            GYANELGE+FR IVPRLV PSYLVA  YVL D  DK  KA      EG+
Sbjct:   18 GYANELGESFRPIVPRLVVPSYLVAFGYVLGDTYDKASKAHSKAVAEGV 66
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BLAST of mRNA_M-pyrifera_M_contig125544.5161.1 vs. uniprot
Match: UPI000A1C5550 (mitochondrial fission process protein 1 n=2 Tax=Oxudercinae TaxID=497678 RepID=UPI000A1C5550)

HSP 1 Score: 62.8 bits (151), Expect = 1.290e-10
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 GYANELGEAFRYIVP-RLVTPSYLVASAYVLADAVDKGKKAMKVRGFE-GLWEGMKIVLLVTFSW 189
            GYANE+GEAFR +VP  LV  SY+VA++YV ADAVDKGKKA K  G + G    + + ++ TF W
Sbjct:   24 GYANEVGEAFRALVPVSLVWGSYVVATSYVTADAVDKGKKAAKDHGDKPGKTTRVAVAVVDTFVW 88
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BLAST of mRNA_M-pyrifera_M_contig125544.5161.1 vs. uniprot
Match: UPI001885C7B6 (mitochondrial fission process protein 1 n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI001885C7B6)

HSP 1 Score: 62.8 bits (151), Expect = 1.290e-10
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 GYANELGEAFRYIVP-RLVTPSYLVASAYVLADAVDKGKKAMKVRGFE-GLWEGMKIVLLVTFSW 189
            GYANE+GEAFR +VP  LV  SY+VA+AYV ADAVDKGKKA    G E G    +   ++ TF W
Sbjct:   24 GYANEVGEAFRPLVPVSLVRASYVVATAYVSADAVDKGKKAAAAHGDEPGQKTRVATAVMDTFVW 88
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BLAST of mRNA_M-pyrifera_M_contig125544.5161.1 vs. uniprot
Match: H9GFH6_ANOCA (Mitochondrial fission process protein 1 n=2 Tax=Anolis carolinensis TaxID=28377 RepID=H9GFH6_ANOCA)

HSP 1 Score: 62.8 bits (151), Expect = 1.340e-10
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 GYANELGEAFRYIVP-RLVTPSYLVASAYVLADAVDKGKKAMKVRGFEG--LWEGMKIVLLVTFSW 189
            GYANE+GE+FR IVP  LV  SY VA+AYV ADAVDKGKKA  ++  +G  + +G  + ++ TF W
Sbjct:   22 GYANEVGESFRAIVPVSLVWASYGVATAYVTADAVDKGKKAAALQAQQGGGVAKGATLAVVDTFIW 87
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BLAST of mRNA_M-pyrifera_M_contig125544.5161.1 vs. uniprot
Match: UPI001AAD4DF4 (mitochondrial fission process protein 1 n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAD4DF4)

HSP 1 Score: 62.8 bits (151), Expect = 1.410e-10
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 GYANELGEAFRYIVPR-LVTPSYLVASAYVLADAVDKGKKAMKVR-GFEGLWEGMKIVLLVTFSW 189
            GYANE+GE+FR +VP+ LV  +Y VA+AYV ADA DKG+KA ++  G  G  +G+ + ++ TF W
Sbjct:   23 GYANEVGESFRALVPKALVWATYGVATAYVTADAADKGRKAAELNEGSRGRTKGVTVAVIDTFVW 87
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BLAST of mRNA_M-pyrifera_M_contig125544.5161.1 vs. uniprot
Match: Q9UDX5-2 (Isoform 2 of Mitochondrial fission process protein 1 n=17 Tax=Catarrhini TaxID=9526 RepID=Q9UDX5-2)

HSP 1 Score: 62.0 bits (149), Expect = 1.430e-10
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 GYANELGEAFRYIVPRLVT-PSYLVASAYVLADAVDKGKKAMKVRGF 138
            GYANE+GEAFR +VP  V   SY VAS+YVLADA+DKGKKA +V GF
Sbjct:   23 GYANEVGEAFRSLVPAAVVWLSYGVASSYVLADAIDKGKKAGEVGGF 69
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BLAST of mRNA_M-pyrifera_M_contig125544.5161.1 vs. uniprot
Match: A0A6A3XT91_9STRA (Mitochondrial fission process protein 1 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XT91_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.920e-10
Identity = 32/49 (65.31%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 GYANELGEAFRYIVPRLVTPSYLVASAYVLADAVDKGKKAMKVRGFEGL 147
            GYANELGE+FR IVPRLV PSYLVA  YVL D  DK  KA      EG+
Sbjct:   22 GYANELGESFRPIVPRLVVPSYLVAFGYVLGDTFDKANKAHAKAVAEGV 70
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BLAST of mRNA_M-pyrifera_M_contig125544.5161.1 vs. uniprot
Match: UPI000717C9B4 (mitochondrial fission process protein 1 isoform X2 n=2 Tax=Equus TaxID=9789 RepID=UPI000717C9B4)

HSP 1 Score: 61.6 bits (148), Expect = 2.010e-10
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 GYANELGEAFRYIVPRLVT-PSYLVASAYVLADAVDKGKKAMKVRG 135
            GYANE+GEAFR +VP  V   SY VAS+YVLADA+DKGKKA KV G
Sbjct:   23 GYANEVGEAFRSLVPAAVVWLSYGVASSYVLADAIDKGKKAGKVSG 68
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125544.5161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C5ZIK6_MARMA1.690e-1155.38Mitochondrial fission process protein 1 n=6 Tax=Ma... [more]
A0A8D2I724_UROPR2.290e-1155.38Mitochondrial fission process protein 1 n=2 Tax=Ma... [more]
G4YFS8_PHYSP1.030e-1065.31Mitochondrial fission process protein 1 (Fragment)... [more]
UPI000A1C55501.290e-1055.38mitochondrial fission process protein 1 n=2 Tax=Ox... [more]
UPI001885C7B61.290e-1056.92mitochondrial fission process protein 1 n=1 Tax=Sy... [more]
H9GFH6_ANOCA1.340e-1054.55Mitochondrial fission process protein 1 n=2 Tax=An... [more]
UPI001AAD4DF41.410e-1050.77mitochondrial fission process protein 1 n=1 Tax=Ra... [more]
Q9UDX5-21.430e-1070.21Isoform 2 of Mitochondrial fission process protein... [more]
A0A6A3XT91_9STRA1.920e-1065.31Mitochondrial fission process protein 1 n=4 Tax=Ph... [more]
UPI000717C9B42.010e-1071.74mitochondrial fission process protein 1 isoform X2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125544contigM-pyrifera_M_contig125544:306..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score65.9
Seed ortholog evalue8.7e-09
Seed eggNOG ortholog43179.ENSSTOP00000018179
Preferred nameMTFP1
KEGG koko:K17981
Hectar predicted targeting categoryother localisation
GOsGO:0000266,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0061024,GO:0071840
EggNOG free text desc.Mitochondrial fission process
EggNOG OGs35VUX@314146,3A5RJ@33154,3BQMU@33208,3D6PI@33213,3JAEY@40674,4820T@7711,4985A@7742,4PTPN@9989,KOG3945@1,KOG3945@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006480.1
COG Functional cat.S
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815771.0419343-CDS-M-pyrifera_M_contig125544:305..5121622815771.0419343-CDS-M-pyrifera_M_contig125544:305..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125544 306..512 -
1692277561.5910618-CDS-M-pyrifera_M_contig125544:305..5121692277561.5910618-CDS-M-pyrifera_M_contig125544:305..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125544 306..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125544.5161.1prot_M-pyrifera_M_contig125544.5161.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125544 306..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125544.5161.1

>prot_M-pyrifera_M_contig125544.5161.1 ID=prot_M-pyrifera_M_contig125544.5161.1|Name=mRNA_M-pyrifera_M_contig125544.5161.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
GYANELGEAFRYIVPRLVTPSYLVASAYVLADAVDKGKKAMKVRGFEGLW
EGMKIVLLVTFSWFWELW*
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mRNA from alignment at M-pyrifera_M_contig125544:306..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125544.5161.1 ID=mRNA_M-pyrifera_M_contig125544.5161.1|Name=mRNA_M-pyrifera_M_contig125544.5161.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig125544:306..512- (Macrocystis pyrifera P11B4 male)
GGGTATGCGAATGAGCTTGGGGAGGCATTTCGATACATTGTGCCTCGTCT
CGTCACTCCCAGCTACCTTGTAGCTTCAGCATATGTCCTGGCCGATGCAG
TAGATAAGGGAAAGAAGGCCATGAAGGTAAGAGGGTTTGAAGGGTTGTGG
GAAGGGATGAAAATTGTGCTCCTTGTGACGTTTTCTTGGTTCTGGGAATT
GTGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125544:306..512-

>mRNA_M-pyrifera_M_contig125544.5161.1 ID=mRNA_M-pyrifera_M_contig125544.5161.1|Name=mRNA_M-pyrifera_M_contig125544.5161.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig125544:306..512- (Macrocystis pyrifera P11B4 male)
GGGTATGCGAATGAGCTTGGGGAGGCATTTCGATACATTGTGCCTCGTCT
CGTCACTCCCAGCTACCTTGTAGCTTCAGCATATGTCCTGGCCGATGCAG
TAGATAAGGGAAAGAAGGCCATGAAGGTAAGAGGGTTTGAAGGGTTGTGG
GAAGGGATGAAAATTGTGCTCCTTGTGACGTTTTCTTGGTTCTGGGAATT
GTGGTGAGGGTATGCGAATGAGCTTGGGGAGGCATTTCGATACATTGTGC
CTCGTCTCGTCACTCCCAGCTACCTTGTAGCTTCAGCATATGTCCTGGCC
GATGCAGTAGATAAGGGAAAGAAGGCCATGAAGGTAAGAGGGTTTGAAGG
GTTGTGGGAAGGGATGAAAATTGTGCTCCTTGTGACGTTTTCTTGGTTCT
GGGAATTGTGGTGA
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