mRNA_M-pyrifera_M_contig125496.5148.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125496.5148.1
Unique NamemRNA_M-pyrifera_M_contig125496.5148.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig125496.5148.1 vs. uniprot
Match: A0A2U3YPE2_LEPWE (Nuclear pore complex protein Nup93 n=1 Tax=Leptonychotes weddellii TaxID=9713 RepID=A0A2U3YPE2_LEPWE)

HSP 1 Score: 75.5 bits (184), Expect = 1.710e-13
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 YVRVFANSNPAEAVHYLFLLRDERERE------RSICELVLFTREYDLILGTALEDGSRQNGVVDELMADEAPGIAHQVADRLVHNGGRYADAARLYFLAGTVEAHAKVLLVLNNQMRLVMTQ 351
            Y R F +++P EA+ Y + LRDE++ +      R + ELV+ +RE+D+ILG    DGSR+ GV+D+  +D  P I ++VA  +  N G + +AA+LY LA   +   KVL ++N  +  V+ Q
Sbjct:  353 YTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKP-IINKVAS-VAENKGLFEEAAKLYDLAKNAD---KVLELMNKLLSPVVPQ 470
[Close]
BLAST of mRNA_M-pyrifera_M_contig125496.5148.1 vs. uniprot
Match: A0A4U1EW82_MONMO (Nuclear pore complex protein Nup93 (Fragment) n=1 Tax=Monodon monoceros TaxID=40151 RepID=A0A4U1EW82_MONMO)

HSP 1 Score: 75.5 bits (184), Expect = 1.710e-13
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 YVRVFANSNPAEAVHYLFLLRDERERE------RSICELVLFTREYDLILGTALEDGSRQNGVVDELMADEAPGIAHQVADRLVHNGGRYADAARLYFLAGTVEAHAKVLLVLNNQMRLVMTQ 351
            Y R F +++P EA+ Y + LRDE++ +      R + ELV+ +RE+D+ILG    DGSR+ GV+D+  +D  P I ++VA  +  N G + +AA+LY LA   +   KVL ++N  +  V+ Q
Sbjct:  360 YTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKP-IINKVAS-VAENKGLFEEAAKLYDLAKNAD---KVLELMNKLLSPVVPQ 477
[Close]
BLAST of mRNA_M-pyrifera_M_contig125496.5148.1 vs. uniprot
Match: A0A7F8K7M1_DELLE (Nuclear pore complex protein Nup93 n=3 Tax=Eutheria TaxID=9347 RepID=A0A7F8K7M1_DELLE)

HSP 1 Score: 75.5 bits (184), Expect = 1.710e-13
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 YVRVFANSNPAEAVHYLFLLRDERERE------RSICELVLFTREYDLILGTALEDGSRQNGVVDELMADEAPGIAHQVADRLVHNGGRYADAARLYFLAGTVEAHAKVLLVLNNQMRLVMTQ 351
            Y R F +++P EA+ Y + LRDE++ +      R + ELV+ +RE+D+ILG    DGSR+ GV+D+  +D  P I ++VA  +  N G + +AA+LY LA   +   KVL ++N  +  V+ Q
Sbjct:  373 YTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKP-IINKVAS-VAENKGLFEEAAKLYDLAKNAD---KVLELMNKLLSPVVPQ 490
[Close]
BLAST of mRNA_M-pyrifera_M_contig125496.5148.1 vs. uniprot
Match: A0A5N4DU68_CAMDR (Nuclear pore complex protein Nup93 n=1 Tax=Camelus dromedarius TaxID=9838 RepID=A0A5N4DU68_CAMDR)

HSP 1 Score: 75.5 bits (184), Expect = 1.720e-13
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 YVRVFANSNPAEAVHYLFLLRDERERE------RSICELVLFTREYDLILGTALEDGSRQNGVVDELMADEAPGIAHQVADRLVHNGGRYADAARLYFLAGTVEAHAKVLLVLNNQMRLVMTQ 351
            Y R F +++P EA+ Y + LRDE++ +      R + ELV+ +RE+D+ILG    DGSR+ GV+D+  +D  P I ++VA  +  N G + +AA+LY LA   +   KVL ++N  +  V+ Q
Sbjct:  391 YTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKP-IINKVAS-VAENKGLFEEAAKLYDLAKNAD---KVLELMNKLLSPVVPQ 508
[Close]
BLAST of mRNA_M-pyrifera_M_contig125496.5148.1 vs. uniprot
Match: UPI0009448F1D (nuclear pore complex protein Nup93 isoform X6 n=1 Tax=Rhinolophus sinicus TaxID=89399 RepID=UPI0009448F1D)

HSP 1 Score: 75.5 bits (184), Expect = 1.730e-13
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 YVRVFANSNPAEAVHYLFLLRDERERE------RSICELVLFTREYDLILGTALEDGSRQNGVVDELMADEAPGIAHQVADRLVHNGGRYADAARLYFLAGTVEAHAKVLLVLNNQMRLVMTQ 351
            Y R F +++P EA+ Y + LRDE++ +      R + ELV+ +RE+D+ILG    DGSR+ GV+D+  +D  P I ++VA  +  N G + +AA+LY LA   +   KVL ++N  +  V+ Q
Sbjct:  410 YTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKP-IINKVAS-VAENKGLFEEAAKLYDLAKNAD---KVLELMNKLLSPVVPQ 527
[Close]
BLAST of mRNA_M-pyrifera_M_contig125496.5148.1 vs. uniprot
Match: UPI00141ACD8B (nuclear pore complex protein Nup93 isoform X3 n=1 Tax=Trachypithecus francoisi TaxID=54180 RepID=UPI00141ACD8B)

HSP 1 Score: 75.5 bits (184), Expect = 1.740e-13
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 YVRVFANSNPAEAVHYLFLLRDERERE------RSICELVLFTREYDLILGTALEDGSRQNGVVDELMADEAPGIAHQVADRLVHNGGRYADAARLYFLAGTVEAHAKVLLVLNNQMRLVMTQ 351
            Y R F +++P EA+ Y + LRDE++ +      R + ELV+ +RE+D+ILG    DGSR+ GV+D+  +D  P I ++VA  +  N G + +AA+LY LA   +   KVL ++N  +  V+ Q
Sbjct:  545 YTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKP-IINKVAS-VAENKGLFEEAAKLYDLAKNAD---KVLELMNKLLSPVVPQ 662
[Close]
BLAST of mRNA_M-pyrifera_M_contig125496.5148.1 vs. uniprot
Match: A0A337SCP4_FELCA (Nuclear pore complex protein Nup93 n=22 Tax=Boreoeutheria TaxID=1437010 RepID=A0A337SCP4_FELCA)

HSP 1 Score: 75.5 bits (184), Expect = 1.740e-13
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 YVRVFANSNPAEAVHYLFLLRDERERE------RSICELVLFTREYDLILGTALEDGSRQNGVVDELMADEAPGIAHQVADRLVHNGGRYADAARLYFLAGTVEAHAKVLLVLNNQMRLVMTQ 351
            Y R F +++P EA+ Y + LRDE++ +      R + ELV+ +RE+D+ILG    DGSR+ GV+D+  +D  P I ++VA  +  N G + +AA+LY LA   +   KVL ++N  +  V+ Q
Sbjct:  514 YTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKP-IINKVAS-VAENKGLFEEAAKLYDLAKNAD---KVLELMNKLLSPVVPQ 631
[Close]
BLAST of mRNA_M-pyrifera_M_contig125496.5148.1 vs. uniprot
Match: NUP93_HUMAN (Nuclear pore complex protein Nup93 n=731 Tax=Tetrapoda TaxID=32523 RepID=NUP93_HUMAN)

HSP 1 Score: 75.5 bits (184), Expect = 1.750e-13
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 YVRVFANSNPAEAVHYLFLLRDERERE------RSICELVLFTREYDLILGTALEDGSRQNGVVDELMADEAPGIAHQVADRLVHNGGRYADAARLYFLAGTVEAHAKVLLVLNNQMRLVMTQ 351
            Y R F +++P EA+ Y + LRDE++ +      R + ELV+ +RE+D+ILG    DGSR+ GV+D+  +D  P I ++VA  +  N G + +AA+LY LA   +   KVL ++N  +  V+ Q
Sbjct:  535 YTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKP-IINKVAS-VAENKGLFEEAAKLYDLAKNAD---KVLELMNKLLSPVVPQ 652
[Close]
BLAST of mRNA_M-pyrifera_M_contig125496.5148.1 vs. uniprot
Match: NUP93_MOUSE (Nuclear pore complex protein Nup93 n=138 Tax=Amniota TaxID=32524 RepID=NUP93_MOUSE)

HSP 1 Score: 75.5 bits (184), Expect = 1.750e-13
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 YVRVFANSNPAEAVHYLFLLRDERERE------RSICELVLFTREYDLILGTALEDGSRQNGVVDELMADEAPGIAHQVADRLVHNGGRYADAARLYFLAGTVEAHAKVLLVLNNQMRLVMTQ 351
            Y R F +++P EA+ Y + LRDE++ +      R + ELV+ +RE+D+ILG    DGSR+ GV+D+  +D  P I ++VA  +  N G + +AA+LY LA   +   KVL ++N  +  V+ Q
Sbjct:  535 YTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKP-IINKVAS-VAENKGLFEEAAKLYDLAKNAD---KVLELMNKLLSPVVPQ 652
[Close]
BLAST of mRNA_M-pyrifera_M_contig125496.5148.1 vs. uniprot
Match: F7DKW7_HORSE (Nuclear pore complex protein Nup93 n=6 Tax=Boreoeutheria TaxID=1437010 RepID=F7DKW7_HORSE)

HSP 1 Score: 75.5 bits (184), Expect = 1.750e-13
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 YVRVFANSNPAEAVHYLFLLRDERERE------RSICELVLFTREYDLILGTALEDGSRQNGVVDELMADEAPGIAHQVADRLVHNGGRYADAARLYFLAGTVEAHAKVLLVLNNQMRLVMTQ 351
            Y R F +++P EA+ Y + LRDE++ +      R + ELV+ +RE+D+ILG    DGSR+ GV+D+  +D  P I ++VA  +  N G + +AA+LY LA   +   KVL ++N  +  V+ Q
Sbjct:  535 YTRKFESTDPREALQYFYFLRDEKDSQGENMFLRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKP-IINKVAS-VAENKGLFEEAAKLYDLAKNAD---KVLELMNKLLSPVVPQ 652
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125496.5148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2U3YPE2_LEPWE1.710e-1338.21Nuclear pore complex protein Nup93 n=1 Tax=Leptony... [more]
A0A4U1EW82_MONMO1.710e-1338.21Nuclear pore complex protein Nup93 (Fragment) n=1 ... [more]
A0A7F8K7M1_DELLE1.710e-1338.21Nuclear pore complex protein Nup93 n=3 Tax=Eutheri... [more]
A0A5N4DU68_CAMDR1.720e-1338.21Nuclear pore complex protein Nup93 n=1 Tax=Camelus... [more]
UPI0009448F1D1.730e-1338.21nuclear pore complex protein Nup93 isoform X6 n=1 ... [more]
UPI00141ACD8B1.740e-1338.21nuclear pore complex protein Nup93 isoform X3 n=1 ... [more]
A0A337SCP4_FELCA1.740e-1338.21Nuclear pore complex protein Nup93 n=22 Tax=Boreoe... [more]
NUP93_HUMAN1.750e-1338.21Nuclear pore complex protein Nup93 n=731 Tax=Tetra... [more]
NUP93_MOUSE1.750e-1338.21Nuclear pore complex protein Nup93 n=138 Tax=Amnio... [more]
F7DKW7_HORSE1.750e-1338.21Nuclear pore complex protein Nup93 n=6 Tax=Boreoeu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125496contigM-pyrifera_M_contig125496:2..358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score80.9
Seed ortholog evalue4.5e-13
Seed eggNOG ortholog9685.ENSFCAP00000008041
Preferred nameNUP93
KEGG koko:K14309
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0001655,GO:0001667,GO:0001822,GO:0002064,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006996,GO:0006997,GO:0006998,GO:0006999,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010256,GO:0010467,GO:0010631,GO:0010646,GO:0010647,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016477,GO:0016973,GO:0017038,GO:0017056,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030855,GO:0031090,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032835,GO:0032991,GO:0033036,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0035850,GO:0040011,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0046931,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051292,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0060390,GO:0060391,GO:0060395,GO:0060429,GO:0060548,GO:0061005,GO:0061024,GO:0061318,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072001,GO:0072006,GO:0072009,GO:0072010,GO:0072015,GO:0072073,GO:0072112,GO:0072310,GO:0072311,GO:0072594,GO:0080134,GO:0080135,GO:0090092,GO:0090100,GO:0090130,GO:0090132,GO:0090521,GO:1900407,GO:1900408,GO:1901031,GO:1901032,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903205,GO:1903206,GO:2001023,GO:2001024,GO:2001038,GO:2001039
EggNOG free text desc.Nuclear pore complex protein Nup93
EggNOG OGs38B6B@33154,3BG2V@33208,3CX76@33213,3EPFX@33554,3JBYM@40674,483CR@7711,48X4U@7742,KOG2168@1,KOG2168@2759
COG Functional cat.D
Best tax levelCarnivora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.4446743-CDS-M-pyrifera_M_contig125496:1..3581622815770.4446743-CDS-M-pyrifera_M_contig125496:1..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125496 2..358 +
1692277561.3121185-CDS-M-pyrifera_M_contig125496:1..3581692277561.3121185-CDS-M-pyrifera_M_contig125496:1..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125496 2..358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125496.5148.1prot_M-pyrifera_M_contig125496.5148.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125496 2..358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125496.5148.1

>prot_M-pyrifera_M_contig125496.5148.1 ID=prot_M-pyrifera_M_contig125496.5148.1|Name=mRNA_M-pyrifera_M_contig125496.5148.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
YVRVFANSNPAEAVHYLFLLRDERERERSICELVLFTREYDLILGTALED
GSRQNGVVDELMADEAPGIAHQVADRLVHNGGRYADAARLYFLAGTVEAH
AKVLLVLNNQMRLVMTQQS
back to top

mRNA from alignment at M-pyrifera_M_contig125496:2..358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125496.5148.1 ID=mRNA_M-pyrifera_M_contig125496.5148.1|Name=mRNA_M-pyrifera_M_contig125496.5148.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig125496:2..358+ (Macrocystis pyrifera P11B4 male)
TACGTACGCGTGTTCGCCAATTCGAACCCTGCCGAGGCGGTGCACTACCT
TTTCCTCCTCCGCGACGAGCGCGAGCGCGAGAGGAGCATCTGCGAGCTGG
TCCTCTTCACGCGCGAGTACGACCTCATCCTCGGCACTGCGCTGGAGGAC
GGCAGCAGGCAGAACGGCGTCGTGGACGAGCTCATGGCCGACGAGGCGCC
AGGCATTGCCCACCAGGTCGCCGACCGCCTCGTCCACAACGGTGGCCGCT
ACGCAGACGCAGCGCGGCTCTACTTCCTCGCAGGGACTGTGGAGGCGCAC
GCCAAGGTGCTGCTGGTGCTGAACAACCAGATGCGCCTCGTCATGACGCA
GCAGAGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig125496:2..358+

>mRNA_M-pyrifera_M_contig125496.5148.1 ID=mRNA_M-pyrifera_M_contig125496.5148.1|Name=mRNA_M-pyrifera_M_contig125496.5148.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig125496:2..358+ (Macrocystis pyrifera P11B4 male)
TACGTACGCGTGTTCGCCAATTCGAACCCTGCCGAGGCGGTGCACTACCT
TTTCCTCCTCCGCGACGAGCGCGAGCGCGAGAGGAGCATCTGCGAGCTGG
TCCTCTTCACGCGCGAGTACGACCTCATCCTCGGCACTGCGCTGGAGGAC
GGCAGCAGGCAGAACGGCGTCGTGGACGAGCTCATGGCCGACGAGGCGCC
AGGCATTGCCCACCAGGTCGCCGACCGCCTCGTCCACAACGGTGGCCGCT
ACGCAGACGCAGCGCGGCTCTACTTCCTCGCAGGGACTGTGGAGGCGCAC
GCCAAGGTGCTGCTGGTGCTGAACAACCAGATGCGCCTCGTCATGACGCA
GCAGAGCTACGTACGCGTGTTCGCCAATTCGAACCCTGCCGAGGCGGTGC
ACTACCTTTTCCTCCTCCGCGACGAGCGCGAGCGCGAGAGGAGCATCTGC
GAGCTGGTCCTCTTCACGCGCGAGTACGACCTCATCCTCGGCACTGCGCT
GGAGGACGGCAGCAGGCAGAACGGCGTCGTGGACGAGCTCATGGCCGACG
AGGCGCCAGGCATTGCCCACCAGGTCGCCGACCGCCTCGTCCACAACGGT
GGCCGCTACGCAGACGCAGCGCGGCTCTACTTCCTCGCAGGGACTGTGGA
GGCGCACGCCAAGGTGCTGCTGGTGCTGAACAACCAGATGCGCCTCGTCA
TGACGCAGCAGAGC
back to top