mRNA_M-pyrifera_M_contig125321.5124.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig125321.5124.1 vs. uniprot
Match: A0A523NZ64_9PROT (Glycine--tRNA ligase alpha subunit n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NZ64_9PROT) HSP 1 Score: 242 bits (617), Expect = 1.220e-77 Identity = 121/149 (81.21%), Postives = 133/149 (89.26%), Query Frame = 1
Query: 1 QVGGLDCRPVSGEITYGLERIAMYLQGVDSVYDLVWSDSGEDRVTYGDIYRQNEVEMSAFNFDHADTEILFRRFNDCEAEAGRLIELGLPLPAYEMMVQASHTFNLLDARHAISVTERQRYILRVRTLARAIAEAYYAAREALGFPLVT 447
QVGG+DC PVSGEITYGLERIAMYLQGVDS+YDL+WS+SG V+YGDIYRQNEVEMSA+NF+HA+ +ILF RF CE EA R+I L LPLPAYEMMVQASHTFNLLDAR AISVTERQRYI RVR +ARAIAE+YYAAREALGFPL T
Sbjct: 152 QVGGIDCCPVSGEITYGLERIAMYLQGVDSIYDLIWSNSGTRPVSYGDIYRQNEVEMSAYNFEHANVDILFERFTHCETEAHRMIALQLPLPAYEMMVQASHTFNLLDARQAISVTERQRYIGRVRAVARAIAESYYAAREALGFPLNT 300
BLAST of mRNA_M-pyrifera_M_contig125321.5124.1 vs. uniprot
Match: A0A8J6QNT6_9GAMM (Glycine--tRNA ligase alpha subunit n=3 Tax=Neiella TaxID=1434025 RepID=A0A8J6QNT6_9GAMM) HSP 1 Score: 236 bits (602), Expect = 1.960e-75 Identity = 111/156 (71.15%), Postives = 137/156 (87.82%), Query Frame = 1
Query: 1 QVGGLDCRPVSGEITYGLERIAMYLQGVDSVYDLVWSDSGEDRVTYGDIYRQNEVEMSAFNFDHADTEILFRRFNDCEAEAGRLIELGLPLPAYEMMVQASHTFNLLDARHAISVTERQRYILRVRTLARAIAEAYYAAREALGFPLVTGAAAAGA 468
QVGGL+C+PV+GEITYGLERIAMYLQGVDS+YDLVW+D +VTYGD++ QNEVE SA+NF+HA+T++LF++F+ CEAE+ +LIE GLPLPAYE +++ASH FN+LDARHAISVTERQRYILRVR LA+A+AEAYYAARE LGFP+ + GA
Sbjct: 151 QVGGLECKPVTGEITYGLERIAMYLQGVDSIYDLVWTDGPLGKVTYGDVFHQNEVEQSAYNFEHANTDVLFKQFDQCEAESNKLIEAGLPLPAYEQVMKASHAFNMLDARHAISVTERQRYILRVRALAKAVAEAYYAAREELGFPMCNNQSQQGA 306
BLAST of mRNA_M-pyrifera_M_contig125321.5124.1 vs. uniprot
Match: D5BUM2_NITHN (Glycine--tRNA ligase alpha subunit n=9 Tax=Nitrosococcus TaxID=1227 RepID=D5BUM2_NITHN) HSP 1 Score: 236 bits (601), Expect = 3.560e-75 Identity = 115/150 (76.67%), Postives = 131/150 (87.33%), Query Frame = 1
Query: 1 QVGGLDCRPVSGEITYGLERIAMYLQGVDSVYDLVWSDSGEDRVTYGDIYRQNEVEMSAFNFDHADTEILFRRFNDCEAEAGRLIELGLPLPAYEMMVQASHTFNLLDARHAISVTERQRYILRVRTLARAIAEAYYAAREALGFPLVTG 450
QVGGL+CRPV+GEITYGLERIAMYLQGV SVYDL+W+D R+TYGD++ QNEVEMS +NF+ ADTE LF FN CEAE+ RLIE GLPLPAYEM+++ASHTFNLLDAR AISVTERQRYILRVR LARA+AEAY A REALGFP++ G
Sbjct: 157 QVGGLECRPVTGEITYGLERIAMYLQGVSSVYDLIWTDGPLGRITYGDVFHQNEVEMSTYNFEQADTESLFAWFNSCEAESKRLIEAGLPLPAYEMVLKASHTFNLLDARRAISVTERQRYILRVRALARAVAEAYLARREALGFPMLAG 306
BLAST of mRNA_M-pyrifera_M_contig125321.5124.1 vs. uniprot
Match: A0A3D5DJ82_9GAMM (Glycine--tRNA ligase alpha subunit n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DJ82_9GAMM) HSP 1 Score: 235 bits (599), Expect = 1.190e-74 Identity = 116/147 (78.91%), Postives = 129/147 (87.76%), Query Frame = 1
Query: 1 QVGGLDCRPVSGEITYGLERIAMYLQGVDSVYDLVWSDSGEDRVTYGDIYRQNEVEMSAFNFDHADTEILFRRFNDCEAEAGRLIELGLPLPAYEMMVQASHTFNLLDARHAISVTERQRYILRVRTLARAIAEAYYAAREALGFPL 441
QVGGLDCRP+SGEITYGLERIAMYLQ VDSVYDL+WSDS V+YGDI+ Q+EVEMSAFNF+HA EILF+RF+DCE EA RLI+L LP P+YEMM+QASHTFNLLDARHAISVTERQRYILR+RTLA IAE YY AR+ L FPL
Sbjct: 173 QVGGLDCRPISGEITYGLERIAMYLQEVDSVYDLIWSDSAGKVVSYGDIFHQSEVEMSAFNFEHASIEILFQRFDDCETEAIRLIDLKLPFPSYEMMIQASHTFNLLDARHAISVTERQRYILRLRTLAHTIAETYYLARKKLDFPL 319
BLAST of mRNA_M-pyrifera_M_contig125321.5124.1 vs. uniprot
Match: G4E2W0_9GAMM (Glycine--tRNA ligase alpha subunit n=1 Tax=Thiorhodospira sibirica ATCC 700588 TaxID=765914 RepID=G4E2W0_9GAMM) HSP 1 Score: 233 bits (595), Expect = 2.710e-74 Identity = 117/151 (77.48%), Postives = 129/151 (85.43%), Query Frame = 1
Query: 1 QVGGLDCRPVSGEITYGLERIAMYLQGVDSVYDLVWSDSGEDRVTYGDIYRQNEVEMSAFNFDHADTEILFRRFNDCEAEAGRLIELGLPLPAYEMMVQASHTFNLLDARHAISVTERQRYILRVRTLARAIAEAYYAAREALGFPLVTGA 453
QVGGLDCRPVSGEITYGLERIAMYLQGV SVYDLVW+ V YGDIY QNEVE SA+NF+ ADT LF F+ CEA++ RL+ELGLPLPAYE +++ASHTFNLLDARHAISVTERQRYILRVR LARA+A+AYYAAREALGFPL A
Sbjct: 150 QVGGLDCRPVSGEITYGLERIAMYLQGVASVYDLVWTQGPHGTVRYGDIYHQNEVEQSAYNFEQADTASLFAWFDTCEAQSKRLVELGLPLPAYEQVLKASHTFNLLDARHAISVTERQRYILRVRELARAVAQAYYAAREALGFPLCAAA 300
BLAST of mRNA_M-pyrifera_M_contig125321.5124.1 vs. uniprot
Match: A0A7C5KGN1_9GAMM (Glycine--tRNA ligase alpha subunit (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C5KGN1_9GAMM) HSP 1 Score: 231 bits (588), Expect = 2.790e-74 Identity = 110/148 (74.32%), Postives = 130/148 (87.84%), Query Frame = 1
Query: 1 QVGGLDCRPVSGEITYGLERIAMYLQGVDSVYDLVWSDSGEDRVTYGDIYRQNEVEMSAFNFDHADTEILFRRFNDCEAEAGRLIELGLPLPAYEMMVQASHTFNLLDARHAISVTERQRYILRVRTLARAIAEAYYAAREALGFPLV 444
QVGGLDCRPV+GEITYGLERIAMYLQGV+SVYDLVW+D + VTYGD++ QNEVE SA+NF+HAD + LF F+ CE ++ RLIELGLPLPAYE +++ASH FNLLDARHAISVTERQRYILRVR LARA+A+AY+ ARE LGFP++
Sbjct: 75 QVGGLDCRPVTGEITYGLERIAMYLQGVESVYDLVWTDGPQGPVTYGDVFHQNEVEQSAYNFEHADVDFLFGLFDQCERDSKRLIELGLPLPAYERVLEASHAFNLLDARHAISVTERQRYILRVRALARAVAQAYFEAREKLGFPML 222
BLAST of mRNA_M-pyrifera_M_contig125321.5124.1 vs. uniprot
Match: UPI000F845ECC (glycine--tRNA ligase subunit alpha n=1 Tax=Sulfuriflexus mobilis TaxID=1811807 RepID=UPI000F845ECC) HSP 1 Score: 232 bits (591), Expect = 8.310e-74 Identity = 112/151 (74.17%), Postives = 131/151 (86.75%), Query Frame = 1
Query: 1 QVGGLDCRPVSGEITYGLERIAMYLQGVDSVYDLVWSDSGEDRVTYGDIYRQNEVEMSAFNFDHADTEILFRRFNDCEAEAGRLIELGLPLPAYEMMVQASHTFNLLDARHAISVTERQRYILRVRTLARAIAEAYYAAREALGFPLVTGA 453
QVGGL+CRPV+GEITYGLER+AMY+QGVDSV+DLVWS S +TYGD++ QNEVEMS +NF+HAD E LF F+ CE E+ RLI GLPLPAYE +++ASHTFNLLDARHAISVTERQ YILRVR+L+RA+AEAYYAAREALGFP+ GA
Sbjct: 151 QVGGLECRPVTGEITYGLERLAMYIQGVDSVFDLVWSKSEHGTITYGDVFHQNEVEMSTYNFEHADVESLFGWFDTCERESQRLIAAGLPLPAYEQVLKASHTFNLLDARHAISVTERQAYILRVRSLSRAVAEAYYAAREALGFPMTKGA 301
BLAST of mRNA_M-pyrifera_M_contig125321.5124.1 vs. uniprot
Match: A0A3M1WE33_9GAMM (Glycine--tRNA ligase alpha subunit n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1WE33_9GAMM) HSP 1 Score: 232 bits (591), Expect = 9.390e-74 Identity = 115/151 (76.16%), Postives = 131/151 (86.75%), Query Frame = 1
Query: 1 QVGGLDCRPVSGEITYGLERIAMYLQGVDSVYDLVWSDSGEDRVTYGDIYRQNEVEMSAFNFDHADTEILFRRFNDCEAEAGRLIELGLPLPAYEMMVQASHTFNLLDARHAISVTERQRYILRVRTLARAIAEAYYAAREALGFPLVTGA 453
QVGGL+CRPVSGEITYGLERIAMYLQGV+SVYDLVW+ E VTYGD++ QNEVE S +NF+ A+TE LF F+ CE E+ RLIE GLPLPAYE +++ASHTFNLLDARHAISVTERQRYILRVR LARA+AEAYY AREALGFP++ GA
Sbjct: 152 QVGGLECRPVSGEITYGLERIAMYLQGVESVYDLVWTRGPEGVVTYGDVFHQNEVEQSRYNFEEANTEALFAWFDTCEQESRRLIEAGLPLPAYEQVLKASHTFNLLDARHAISVTERQRYILRVRELARAVAEAYYQAREALGFPMLRGA 302
BLAST of mRNA_M-pyrifera_M_contig125321.5124.1 vs. uniprot
Match: A0A2N6CJD5_9GAMM (Glycine--tRNA ligase alpha subunit n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2N6CJD5_9GAMM) HSP 1 Score: 231 bits (590), Expect = 1.210e-73 Identity = 112/154 (72.73%), Postives = 131/154 (85.06%), Query Frame = 1
Query: 1 QVGGLDCRPVSGEITYGLERIAMYLQGVDSVYDLVWSDSGEDRVTYGDIYRQNEVEMSAFNFDHADTEILFRRFNDCEAEAGRLIELGLPLPAYEMMVQASHTFNLLDARHAISVTERQRYILRVRTLARAIAEAYYAAREALGFPLVTGAAAA 462
QVGGLDCRPV+GEITYGLERIAMYLQGV+SV+DLVW+D + RVTYGD+Y QNEVEMSAFNF+HAD + LFR+F+ CEA L+E LPLPAYE +++ASH FNLLDARHAISVTERQR+ILRVR LARA+A+ YY REALGFP++ A A
Sbjct: 148 QVGGLDCRPVTGEITYGLERIAMYLQGVESVFDLVWTDGPQGRVTYGDVYHQNEVEMSAFNFEHADIDFLFRQFDHCEAACASLLEASLPLPAYERVLEASHAFNLLDARHAISVTERQRFILRVRNLARAVAQNYYQRREALGFPMLAQKAVA 301
BLAST of mRNA_M-pyrifera_M_contig125321.5124.1 vs. uniprot
Match: A0A5C7S5F2_9GAMM (Glycine--tRNA ligase alpha subunit (Fragment) n=1 Tax=Thiothrix sp. TaxID=1032 RepID=A0A5C7S5F2_9GAMM) HSP 1 Score: 227 bits (579), Expect = 2.290e-73 Identity = 111/148 (75.00%), Postives = 126/148 (85.14%), Query Frame = 1
Query: 1 QVGGLDCRPVSGEITYGLERIAMYLQGVDSVYDLVWSDSGEDRVTYGDIYRQNEVEMSAFNFDHADTEILFRRFNDCEAEAGRLIELGLPLPAYEMMVQASHTFNLLDARHAISVTERQRYILRVRTLARAIAEAYYAAREALGFPLV 444
QVGGLDCRPVSGEITYGLER+AMY+Q V SVYDLVW+ + VTYGD+Y QNEVE S +NF+HADTE LF +FN E E+ R+ ELGLPLPAYE M++ASHTFNLLDAR AISVTERQRYILRVRTLARA+AE YYA RE LGFP++
Sbjct: 49 QVGGLDCRPVSGEITYGLERLAMYMQNVTSVYDLVWTKGPQGIVTYGDVYHQNEVEQSTYNFEHADTEALFHQFNVAERESQRMSELGLPLPAYEQMLKASHTFNLLDARKAISVTERQRYILRVRTLARAVAEGYYATREKLGFPML 196 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125321.5124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig125321.5124.1 >prot_M-pyrifera_M_contig125321.5124.1 ID=prot_M-pyrifera_M_contig125321.5124.1|Name=mRNA_M-pyrifera_M_contig125321.5124.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp QVGGLDCRPVSGEITYGLERIAMYLQGVDSVYDLVWSDSGEDRVTYGDIYback to top mRNA from alignment at M-pyrifera_M_contig125321:3..479+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig125321.5124.1 ID=mRNA_M-pyrifera_M_contig125321.5124.1|Name=mRNA_M-pyrifera_M_contig125321.5124.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig125321:3..479+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig125321:3..479+ >mRNA_M-pyrifera_M_contig125321.5124.1 ID=mRNA_M-pyrifera_M_contig125321.5124.1|Name=mRNA_M-pyrifera_M_contig125321.5124.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig125321:3..479+ (Macrocystis pyrifera P11B4 male)back to top |