mRNA_M-pyrifera_M_contig125286.5115.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125286.5115.1
Unique NamemRNA_M-pyrifera_M_contig125286.5115.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125286.5115.1 vs. uniprot
Match: A0A518ING5_9BACT (Outer membrane biogenesis protein BamB n=6 Tax=Rosistilla TaxID=2795779 RepID=A0A518ING5_9BACT)

HSP 1 Score: 243 bits (620), Expect = 4.320e-77
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1
Query:    1 PKAAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFTSSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIADGQLILRTGDAVYCIAKP 351
            PKAAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFTSSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIADGQLILRTGDAVYCIAKP
Sbjct:  333 PKAAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFTSSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIADGQLILRTGDAVYCIAKP 449          
BLAST of mRNA_M-pyrifera_M_contig125286.5115.1 vs. uniprot
Match: A0A2E7EL88_9PLAN (Serine/threonine protein kinase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7EL88_9PLAN)

HSP 1 Score: 166 bits (420), Expect = 1.830e-47
Identity = 73/116 (62.93%), Postives = 91/116 (78.45%), Query Frame = 1
Query:    1 PKAAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFTSSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIADGQLILRTGDAVYCIAK 348
            PKAAPYNPST++Y   +YVL+DRG  A YDA TG+ +Y ++RIPGGR+FTSSPWAY GKIFCLNE GKT  I AG EF++L  NEL+  ELCM TPA+ DG L++RT D +YC+ +
Sbjct:  307 PKAAPYNPSTLLYDGLIYVLYDRGFFACYDAATGKEVYGRQRIPGGRAFTSSPWAYNGKIFCLNEDGKTFVIKAGREFEVLHVNELEEDELCMATPAMVDGYLLIRTADRIYCLRQ 422          
BLAST of mRNA_M-pyrifera_M_contig125286.5115.1 vs. uniprot
Match: A0A2D5BMD1_9BACT (Serine/threonine protein kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5BMD1_9BACT)

HSP 1 Score: 166 bits (419), Expect = 4.160e-47
Identity = 75/116 (64.66%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    4 KAAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFTSSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIADGQLILRTGDAVYCIAKP 351
            +AAPYNP+T+VYGD LYVL DRG+MA Y+A TGE++Y ++R+ GGR+FT+SPWAY GKIFCLNE+G+T  I AG EF+LL TN L+  ELCM TPA+A   LILR+   VYCIA+P
Sbjct:  330 RAAPYNPTTLVYGDLLYVLLDRGIMACYEAKTGELVYSRQRLQGGRAFTASPWAYNGKIFCLNEYGETYVIKAGREFELLHTNSLEEDELCMATPAMAGDWLILRSEHRVYCIAQP 445          
BLAST of mRNA_M-pyrifera_M_contig125286.5115.1 vs. uniprot
Match: A0A518GAR1_9BACT (PQQ_3 domain-containing protein n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518GAR1_9BACT)

HSP 1 Score: 162 bits (411), Expect = 7.470e-46
Identity = 74/116 (63.79%), Postives = 93/116 (80.17%), Query Frame = 1
Query:    1 PKAAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFTSSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIADGQLILRTGDAVYCIAK 348
            P+AAPYNPSTIVY DQLYVL+DRGL ASY A TG ++Y+++RI  GRSFT+SPWA  GK++CLNEFG+T  I  G E++LL  N+L+S +L M TPAI   +LILRTGDA+YCI +
Sbjct:  340 PQAAPYNPSTIVYEDQLYVLYDRGLFASYHARTGALVYDQQRIRNGRSFTASPWAANGKLYCLNEFGETFVIKTGSEYELLHVNQLESKQLAMATPAIVGSRLILRTGDALYCIGE 455          
BLAST of mRNA_M-pyrifera_M_contig125286.5115.1 vs. uniprot
Match: A0A517ZGR4_9PLAN (Outer membrane biogenesis protein BamB n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZGR4_9PLAN)

HSP 1 Score: 156 bits (395), Expect = 1.540e-43
Identity = 70/115 (60.87%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    4 KAAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFTSSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIADGQLILRTGDAVYCIAK 348
            +A PYNPSTIVYGD LYVL DRG +A YDA TG+ +Y K+RIP G++FT+SPWAYEGKIFCLNE G T    AG E++LL+TN L    +CM TPA+A G+L++RT   +YCI +
Sbjct:  333 QAGPYNPSTIVYGDLLYVLLDRGFLACYDAKTGKQVYGKQRIPNGKNFTASPWAYEGKIFCLNEDGVTFVFRAGREYELLRTNSLTDDTMCMATPAMAQGKLLIRTDSGIYCIER 447          
BLAST of mRNA_M-pyrifera_M_contig125286.5115.1 vs. uniprot
Match: A0A2D7EG55_9BACT (Serine/threonine protein kinase n=3 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D7EG55_9BACT)

HSP 1 Score: 153 bits (386), Expect = 4.980e-42
Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 PKAAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFTSSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIADGQLILRTGDAVYCIAK 348
            P  APYNPSTI Y   LYVL+DRGLMA+YDA TGE IY K+RIP G +FTSSPWAY GK+FCLNE G+T  I AG EF+LL TN L+  ++ M TPAI D  L++RT   +YCI +
Sbjct:  360 PTIAPYNPSTIAYNGVLYVLYDRGLMAAYDAKTGEEIYSKQRIPKGGAFTSSPWAYNGKLFCLNENGETFVIRAGREFELLHTNILEDDDMGMATPAIVDNHLLIRTAARLYCITQ 475          
BLAST of mRNA_M-pyrifera_M_contig125286.5115.1 vs. uniprot
Match: A0A3L7V9U3_9BACT (Serine/threonine protein kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7V9U3_9BACT)

HSP 1 Score: 152 bits (383), Expect = 1.000e-41
Identity = 68/117 (58.12%), Postives = 89/117 (76.07%), Query Frame = 1
Query:    1 PKAAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFTSSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIADGQLILRTGDAVYCIAKP 351
            PK APYNPST+VY  ++YVL+D GL A +D+ TG+ IY ++RIP GR+FTSSPWAY  KIFCLNE G+T  I AG EFK+L TNE +S ++ M +PAI   ++++RT   +YCIAKP
Sbjct:  341 PKGAPYNPSTLVYHGRMYVLYDAGLFACFDSATGKEIYSRQRIPNGRAFTSSPWAYGDKIFCLNEEGQTFVIQAGDEFKILHTNEFESDDMGMASPAILRDRVLIRTATRIYCIAKP 457          
BLAST of mRNA_M-pyrifera_M_contig125286.5115.1 vs. uniprot
Match: A0A2E1KGI0_9PLAN (Serine/threonine protein kinase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E1KGI0_9PLAN)

HSP 1 Score: 151 bits (382), Expect = 1.180e-41
Identity = 62/116 (53.45%), Postives = 90/116 (77.59%), Query Frame = 1
Query:    1 PKAAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFTSSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIADGQLILRTGDAVYCIAK 348
            P+AAPYNP+T+++GD LYVL DRG ++ Y+A TG ++Y+K+R+P GR+FTSSPWAY GKIFCLNE+G T  + AG +F++L  N L   ++CM TPA+   +L++RT + +YCI +
Sbjct:  332 PQAAPYNPATVIWGDLLYVLLDRGYVSCYEAKTGRLVYDKRRLPRGRAFTSSPWAYNGKIFCLNEYGTTYVVRAGRKFEILHQNSLAEDDMCMATPALVGDRLLIRTSERIYCIRR 447          
BLAST of mRNA_M-pyrifera_M_contig125286.5115.1 vs. uniprot
Match: A0A3E0PGP7_9BACT (Serine/threonine protein kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PGP7_9BACT)

HSP 1 Score: 150 bits (379), Expect = 3.370e-41
Identity = 67/114 (58.77%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    7 AAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFTSSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIADGQLILRTGDAVYCIAK 348
            A PYNPST++Y  QLYVL+D+G  AS+DA TGE +Y KKRIP G++FT+SPWAY  ++FCLNE G T  IAAG +F++L TN L   ++CM+TPAI   +LI+RT   VYCI K
Sbjct:  335 AGPYNPSTLLYKGQLYVLYDQGFFASFDAQTGEEVYSKKRIPDGKAFTASPWAYNNRVFCLNEDGVTFVIAAGKDFEILHTNTLAEDDMCMSTPAIVGDKLIIRTSARVYCIQK 448          
BLAST of mRNA_M-pyrifera_M_contig125286.5115.1 vs. uniprot
Match: A0A517TZ34_9BACT (Outer membrane biogenesis protein BamB n=2 Tax=Lacipirellula limnantheis TaxID=2528024 RepID=A0A517TZ34_9BACT)

HSP 1 Score: 150 bits (379), Expect = 4.190e-41
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 PKAAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFTSSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIADGQLILRTGDAVYCIAKP 351
            PK+APYNP+T++Y  ++YVL+D+GL+A +DA  G+ +Y K+R+  GRSFTSSPWAY GK+FCLNE G T  I AG  F+ L TN L   ++CM TPAIADG+LI+RT   VYCI  P
Sbjct:  341 PKSAPYNPTTLLYDGRIYVLYDQGLIACFDAKDGKALYAKRRLLNGRSFTSSPWAYNGKVFCLNEDGVTSVIKAGDVFEELGTNPLAEDDMCMATPAIADGRLIIRTSKRVYCIESP 457          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125286.5115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518ING5_9BACT4.320e-77100.00Outer membrane biogenesis protein BamB n=6 Tax=Ros... [more]
A0A2E7EL88_9PLAN1.830e-4762.93Serine/threonine protein kinase n=1 Tax=Planctomyc... [more]
A0A2D5BMD1_9BACT4.160e-4764.66Serine/threonine protein kinase n=1 Tax=Planctomyc... [more]
A0A518GAR1_9BACT7.470e-4663.79PQQ_3 domain-containing protein n=1 Tax=Aureliella... [more]
A0A517ZGR4_9PLAN1.540e-4360.87Outer membrane biogenesis protein BamB n=3 Tax=Sym... [more]
A0A2D7EG55_9BACT4.980e-4262.07Serine/threonine protein kinase n=3 Tax=Rhodopirel... [more]
A0A3L7V9U3_9BACT1.000e-4158.12Serine/threonine protein kinase n=1 Tax=Planctomyc... [more]
A0A2E1KGI0_9PLAN1.180e-4153.45Serine/threonine protein kinase n=1 Tax=Planctomyc... [more]
A0A3E0PGP7_9BACT3.370e-4158.77Serine/threonine protein kinase n=1 Tax=Planctomyc... [more]
A0A517TZ34_9BACT4.190e-4158.12Outer membrane biogenesis protein BamB n=2 Tax=Lac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125286contigM-pyrifera_M_contig125286:2..355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score145.2
Seed ortholog evalue1.9e-32
Seed eggNOG ortholog243090.RB4667
Hectar predicted targeting categoryother localisation
EggNOG free text desc.amino acid activation for nonribosomal peptide biosynthetic process
EggNOG OGsCOG1520@1,COG1520@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.8288503-CDS-M-pyrifera_M_contig125286:1..3551622815768.8288503-CDS-M-pyrifera_M_contig125286:1..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125286 2..355 +
1692277560.6432312-CDS-M-pyrifera_M_contig125286:1..3551692277560.6432312-CDS-M-pyrifera_M_contig125286:1..355Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125286 2..355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125286.5115.1prot_M-pyrifera_M_contig125286.5115.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125286 2..355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125286.5115.1

>prot_M-pyrifera_M_contig125286.5115.1 ID=prot_M-pyrifera_M_contig125286.5115.1|Name=mRNA_M-pyrifera_M_contig125286.5115.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
PKAAPYNPSTIVYGDQLYVLHDRGLMASYDALTGEVIYEKKRIPGGRSFT
SSPWAYEGKIFCLNEFGKTLAIAAGPEFKLLQTNELDSTELCMTTPAIAD
GQLILRTGDAVYCIAKP*
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mRNA from alignment at M-pyrifera_M_contig125286:2..355+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125286.5115.1 ID=mRNA_M-pyrifera_M_contig125286.5115.1|Name=mRNA_M-pyrifera_M_contig125286.5115.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig125286:2..355+ (Macrocystis pyrifera P11B4 male)
CCCAAGGCGGCGCCATACAACCCATCGACCATCGTCTACGGCGACCAGTT ATATGTTCTGCACGATCGGGGCCTGATGGCTTCTTATGATGCGCTCACGG GTGAAGTGATCTACGAAAAGAAACGGATTCCCGGCGGCAGATCATTTACA TCATCGCCGTGGGCTTATGAGGGAAAGATCTTCTGTCTGAATGAGTTTGG GAAAACGCTGGCCATTGCCGCCGGTCCTGAATTCAAACTTCTGCAGACCA ATGAACTCGACAGCACCGAACTTTGCATGACCACCCCCGCGATTGCCGAC GGCCAGTTAATTCTCCGCACCGGAGACGCGGTCTATTGCATTGCGAAGCC TTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125286:2..355+

>mRNA_M-pyrifera_M_contig125286.5115.1 ID=mRNA_M-pyrifera_M_contig125286.5115.1|Name=mRNA_M-pyrifera_M_contig125286.5115.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig125286:2..355+ (Macrocystis pyrifera P11B4 male)
CCCAAGGCGGCGCCATACAACCCATCGACCATCGTCTACGGCGACCAGTT
ATATGTTCTGCACGATCGGGGCCTGATGGCTTCTTATGATGCGCTCACGG
GTGAAGTGATCTACGAAAAGAAACGGATTCCCGGCGGCAGATCATTTACA
TCATCGCCGTGGGCTTATGAGGGAAAGATCTTCTGTCTGAATGAGTTTGG
GAAAACGCTGGCCATTGCCGCCGGTCCTGAATTCAAACTTCTGCAGACCA
ATGAACTCGACAGCACCGAACTTTGCATGACCACCCCCGCGATTGCCGAC
GGCCAGTTAATTCTCCGCACCGGAGACGCGGTCTATTGCATTGCGAAGCC
TTAGCCCAAGGCGGCGCCATACAACCCATCGACCATCGTCTACGGCGACC
AGTTATATGTTCTGCACGATCGGGGCCTGATGGCTTCTTATGATGCGCTC
ACGGGTGAAGTGATCTACGAAAAGAAACGGATTCCCGGCGGCAGATCATT
TACATCATCGCCGTGGGCTTATGAGGGAAAGATCTTCTGTCTGAATGAGT
TTGGGAAAACGCTGGCCATTGCCGCCGGTCCTGAATTCAAACTTCTGCAG
ACCAATGAACTCGACAGCACCGAACTTTGCATGACCACCCCCGCGATTGC
CGACGGCCAGTTAATTCTCCGCACCGGAGACGCGGTCTATTGCATTGCGA
AGCCTTAG
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