mRNA_M-pyrifera_M_contig12526.5112.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12526.5112.1
Unique NamemRNA_M-pyrifera_M_contig12526.5112.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12526.5112.1 vs. uniprot
Match: D8LSQ9_ECTSI (Similar to kinesin-C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ9_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 2.040e-118
Identity = 190/239 (79.50%), Postives = 217/239 (90.79%), Query Frame = 1 
Query:    7 RQVSTMGTMDEELQVLRTRAEEAVRLQSELKKVIANTDRVEALYQQEQASQKSCFHAKYWNMMEDMKGKIRVYARCRPFAQYELDQDCKRVVRFLDEATVEVEGHHGAKQFVFDSVFSEDQGQAAIFQDTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGGQGEQRGLTPRVIEEIFGNIEQAKGAIEVKVSCYFIELYLDNLRDLLFAMDNPRGNPPKLEVKLDTNKMVVVKNVVVK 723
            +QVS+MGTM EE+QVLRTRAE A RL+SEL +  ANT R+E L+Q EQ+ +K     KYWNMMEDMKGKIRV+ARCRP AQYEL+QDCKR VRF+D++TVEV+GHHGAKQFVFDSVFSE+ GQAAIF+DTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGG+G+QRGLTPR IEE+FGNIE+AKGA+EVKVSCYFIELYLDNLRDLLFAMD+P G PP+LE+ +D+NKMVVVKNVVVK
Sbjct: 1614 QQVSSMGTMGEEMQVLRTRAEAATRLESELXEATANTSRLEDLFQVEQSLRK-----KYWNMMEDMKGKIRVFARCRPLAQYELNQDCKRAVRFVDDSTVEVDGHHGAKQFVFDSVFSEEHGQAAIFEDTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGGKGDQRGLTPRAIEEVFGNIEKAKGALEVKVSCYFIELYLDNLRDLLFAMDHPTGTPPRLEIHMDSNKMVVVKNVVVK 1847
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BLAST of mRNA_M-pyrifera_M_contig12526.5112.1 vs. uniprot
Match: A0A6V1MSS8_HETAK (Kinesin-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MSS8_HETAK)

HSP 1 Score: 250 bits (639), Expect = 5.370e-77
Identity = 131/240 (54.58%), Postives = 174/240 (72.50%), Query Frame = 1 
Query:    1 MFRQVSTMGTMDEELQVLRTRAEEAVRLQSELKKVIANTDRVEALYQQEQASQKSCFHAKYWNMMEDMKGKIRVYARCRPFAQYELDQDCKRVVRFLDEATVEVEGHHGAKQFVFDSVFSEDQGQAAIFQDTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGGQGEQRGLTPRVIEEIFGNIEQAKGAIEVKVSCYFIELYLDNLRDLLFAMDNP--RGNPPKLEVKLDTNKMVVVKNV 714
            M ++V++MGTM EEL+ LR R+ EA  ++ +LK   A    +E  Y+ EQA +K     KYWNMMEDMKGKIRVYARCRP A+YEL++ C++ VRF+DE T+E+   HG KQFV+D+VFS    Q  +F+DT+NL+QS LDG+NVC+FAYGQTGSGKT+TMTG      G+TPR I +++G IEQ    ++V VS YF+ELY D L DL +++D+   R  PPKL++KLD  KMV +KNV
Sbjct:   90 MKKKVASMGTMGEELEKLRERSAEADEMERQLKVNAAEVAELEQKYKDEQALRK-----KYWNMMEDMKGKIRVYARCRPMAKYELERGCQQAVRFVDETTIEINSAHGPKQFVYDAVFSPANTQEDVFEDTKNLMQSCLDGYNVCLFAYGQTGSGKTFTMTGSDA-MPGVTPRGIRQLYGLIEQNSANLDVTVSTYFVELYNDGLVDLYWSLDHDARREQPPKLDIKLDAKKMVFIKNV 323
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BLAST of mRNA_M-pyrifera_M_contig12526.5112.1 vs. uniprot
Match: A0A7S1U107_9STRA (Kinesin-like protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U107_9STRA)

HSP 1 Score: 224 bits (572), Expect = 3.540e-68
Identity = 117/226 (51.77%), Postives = 161/226 (71.24%), Query Frame = 1 
Query:   52 LRTRAEEAVRLQSELKKVIANTDRVEALYQQEQASQKSCFHAKYWNMMEDMKGKIRVYARCRPFAQYELDQDCKRVVRFLDEATVEVEGHHGAKQFVFDSVFSEDQGQAAIFQDTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGGQG-EQRGLTPRVIEEIFGNIEQAKGAIEVKVSCYFIELYLDNLRDLLFAMDNPRGN-PPKLEVKLDTNKMVVVKNVVVK 723
            LR +AEEA RL  EL++  A  + ++  YQ+E+  ++     KYWNMMEDMKGKIRVYARCRPFAQYE ++   +VV F+DE+T+ V+   G ++F +D+VF+    Q  +F +  +L+QSALDG+NVC FAYGQTGSGKT+TMTG  G E  GLTPR+++E F  I + +G I+VKVSCYF+ELY D  RDL + +D+ R   PPKL++KL+    V ++N +VK
Sbjct:    2 LREKAEEAARLGRELRESRAAEEALQKQYQEEKTLRR-----KYWNMMEDMKGKIRVYARCRPFAQYEKERGASQVVTFVDESTLAVDTSRGPREFTYDNVFAPGSTQQEVFDECSSLMQSALDGYNVCCFAYGQTGSGKTYTMTGVPGTEHAGLTPRLVDECFNLIAENEGKIDVKVSCYFVELYNDGFRDLFWPLDHGRRETPPKLDIKLNQRHTVYIRNAIVK 222
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BLAST of mRNA_M-pyrifera_M_contig12526.5112.1 vs. uniprot
Match: A0A836C7Z6_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Z6_9STRA)

HSP 1 Score: 218 bits (554), Expect = 9.040e-66
Identity = 109/175 (62.29%), Postives = 132/175 (75.43%), Query Frame = 1 
Query:  202 MKGKIRVYARCRPFAQYELDQDCKRVVRFLDEATVEVEGHHGAKQFVFDSVFSEDQGQAAIFQDTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGGQGEQRGLTPRVIEEIFGNIEQAKGAIEVKVSCYFIELYLDNLRDLLFAMDNPRGN-PPKLEVKLDTNKMVVVKNVVVK 723
            MKGKIRV+ARCRPFA YE ++ C++ V FLDE T+EV G  G KQF+FD+ F    GQ  +F+D +NLV+SA+DGFNVCVFAYGQTGSGKT+TM+G   E  GLTPR I EIF   E   G  +V +SCYF+ELYLDNLRDL +A+DNPR   PPKL++K+D  KMV VK VV K
Sbjct:    1 MKGKIRVFARCRPFAGYERERGCQQCVAFLDETTLEVRGSRGPKQFIFDAAFPASVGQEEVFEDMKNLVRSAMDGFNVCVFAYGQTGSGKTFTMSGTP-EMPGLTPRTIAEIFLLKEGLAGVADVTISCYFVELYLDNLRDLFYAVDNPRDTKPPKLDIKVDEKKMVYVKGVVTK 174
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BLAST of mRNA_M-pyrifera_M_contig12526.5112.1 vs. uniprot
Match: A0A482SJC9_9ARCH (Kinesin motor domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJC9_9ARCH)

HSP 1 Score: 197 bits (501), Expect = 1.570e-57
Identity = 111/238 (46.64%), Postives = 155/238 (65.13%), Query Frame = 1 
Query:   31 MDEELQVLRTRAEEAVRLQSELKKVIANTDRVEALYQQEQASQKSCFHAKYWNMMEDMKGKIRVYARCRPFAQYELDQDCKRVVRFLDEATVEVEGHHGAKQFVFDSVFSEDQGQAAIFQDTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGGQGEQRGLTPRVIEEIFGNIEQAKGAIEVKVSCYFIELYLDNLRDLLFAMDNPRG-------NPPKLEVKLDTNKMVVVKNVVVK 723
            M  E+  L+ +AE+      EL+ V+A  D  E    Q+Q  ++S    KY N +ED+KG IRVYARCRP A+YEL++ CK VV   DE ++++    G K+F FD+VF     Q  +F+DT+ LV+S +DGFNVC+FAYGQTGSGKT+TMTG      GLTP+ IEE+F  I++ +  ++VKV+ YF+ELY DNL DL + +DN           PPKL++K+D  KMV +KN ++K
Sbjct:   67 MTAEIGTLKAKAEKC----DELEGVVAAKD-AELSMLQDQFKKESQLRKKYKNELEDLKGAIRVYARCRPMAKYELERGCKAVVDIKDETSLKLTTSRGEKEFEFDAVFGPLSTQDQVFEDTKRLVESCMDGFNVCLFAYGQTGSGKTFTMTGSS-SMPGLTPKAIEELFRLIQE-RVHLQVKVTTYFVELYNDNLVDLYWILDNKSALAKNANLEPPKLDIKMDAKKMVYIKNAIIK 297
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BLAST of mRNA_M-pyrifera_M_contig12526.5112.1 vs. uniprot
Match: A0A1V9YU11_9STRA (Kinesin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YU11_9STRA)

HSP 1 Score: 201 bits (510), Expect = 2.170e-55
Identity = 110/228 (48.25%), Postives = 151/228 (66.23%), Query Frame = 1 
Query:   40 ELQVLRTRAEEAVRLQSELKKVIANTDRVEALYQQEQASQKSCFHAKYWNMMEDMKGKIRVYARCRPFAQYELDQDCKRVVRFLDEATVEVEGHHGAKQFVFDSVFSEDQGQAAIFQDTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGGQGEQRGLTPRVIEEIFGNIEQAKGAIEVKVSCYFIELYLDNLRDLLFAMDNPRGNPPKLEVKLDTNKMVVVKNVVVK 723
            E++ LRT A  A +   EL  +  +  ++E  Y++EQA +K     KY+N +EDMKGKIRVY RCRP +  EL++ C+  VRFLDE T+E+E   G K F +D VF+    Q  +F+DT+NL+QSALDG+NVC+FAYGQTGSGKT+TMTG +    G+TPR+I+ +F + E  K    +    Y +ELY D L DL + +DN     PKLE+K +   MVVV+N+VVK
Sbjct:  978 EVEKLRTEAATAAQTTQELTVLKESFAKLEDNYKEEQALRK-----KYYNTIEDMKGKIRVYCRCRPMSGSELERGCQSAVRFLDEYTLELETSRGPKSFAYDQVFNPSNTQDQVFEDTKNLLQSALDGYNVCIFAYGQTGSGKTFTMTGSESNP-GITPRLIQLMFKSSEALKNNNTITYEGYMLELYNDALIDLFYQLDNNSDKAPKLEIKKNDKGMVVVQNIVVK 1199
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BLAST of mRNA_M-pyrifera_M_contig12526.5112.1 vs. uniprot
Match: A0A7S1CA28_9STRA (Kinesin-like protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA28_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.200e-54
Identity = 98/199 (49.25%), Postives = 135/199 (67.84%), Query Frame = 1 
Query:  133 LYQQEQASQKSCFHAKYWNMMEDMKGKIRVYARCRPFAQYELDQDCKRVVRFLDEATVEVEGHHGAKQFVFDSVFSEDQGQAAIFQDTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGGQGEQRGLTPRVIEEIFGNIEQAKGAIEVKVSCYFIELYLDNLRDLLFAMDNP--RGNPPKLEVKLDTNKMVVVKNVVVK 723
            LY++EQ  +K     KYWNMMEDMKGKIRVYAR RP +  E+++    VV+F D+ ++++E   G +QFVFD+ F     Q A+F DT+NL+QSA DG+NVC+FAYGQTGSGKT+TMTG  G   G+TPR + EIF   E    ++  +++CY +ELY D+L DL + MD    +G P KL++K D   MV + N ++K
Sbjct:  182 LYRKEQVLRK-----KYWNMMEDMKGKIRVYARARPMSGSEIERGNYSVVKFPDDVSIDLETPKGLRQFVFDATFGPGTSQEAVFNDTKNLIQSAFDGYNVCIFAYGQTGSGKTYTMTGAAGSP-GVTPRAMAEIFDLAEGNAKSMRTRITCYMVELYNDSLVDLFWTMDKKLSKGAPAKLDIKKDKKGMVYITNAIIK 374
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BLAST of mRNA_M-pyrifera_M_contig12526.5112.1 vs. uniprot
Match: A0A7S0U2Q0_HEMAN (Kinesin-like protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U2Q0_HEMAN)

HSP 1 Score: 189 bits (481), Expect = 1.150e-53
Identity = 103/208 (49.52%), Postives = 142/208 (68.27%), Query Frame = 1 
Query:  124 VEALYQQEQASQKSCFHAKYWNMMEDMKGKIRVYARCRPFAQYELDQDCKRVVRFLDEATVEVE-GHHGAKQFVFDSVFSEDQGQAAIFQDTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGGQGEQR--GLTPRVIEEIFGNIEQAKGAIEVKVSCYFIELYLDNLRDLLFAMDNPRGN--PPK---LEVKLDTNKMVVVKNVVVK 723
            +E LY++EQ  +K     KY+N +EDMKGKIRVYARCRPFA+YE +++C++ V+FLD+ + EV+ G  G K+F FD VF ED  Q  IF+   +LVQSA+DG+NVCVFAYGQTGSGKT+TM G   ++   G+ PR + E++  ++  K  +++ VSCY +ELY D L DLL   D  + N  P K   L +KLD   +VVV+  VV+
Sbjct:   92 LEGLYKKEQQLRK-----KYYNQIEDMKGKIRVYARCRPFAKYEKEKNCQQAVKFLDDMSCEVDVGKKGKKEFTFDEVFREDSRQEQIFEGVSHLVQSAVDGYNVCVFAYGQTGSGKTFTMYGKADDENLWGIAPRAMRELYELVDAEKDTLDISVSCYMLELYNDQLVDLLVDKDPKKKNHEPDKKNNLAIKLDAKGVVVVQGAVVR 294
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BLAST of mRNA_M-pyrifera_M_contig12526.5112.1 vs. uniprot
Match: A0A7S3H8M4_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8M4_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.250e-53
Identity = 96/197 (48.73%), Postives = 138/197 (70.05%), Query Frame = 1 
Query:  145 EQASQKSCFHAKYWNMMEDMKGKIRVYARCRPFAQYELDQDCKRVVRFLDEATVEVEGHHGAKQFVFDSVFSEDQGQAAIFQDTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGGQGEQRGLTPRVIEEIFGNIEQAKGAIEVKVSCYFIELYLDNLRDLLFAMDNPR----GNPPKLEVKLDTNKMVVVKNVVVK 723
            EQ  +++    KY N +ED+KG IRVYARCRP A+YE+++ CK VV   D+ ++++    G K+F FD+VF ++  Q  +F+DT+ LV+S +DGFNVC+FAYGQTGSGKT+TMTG      GLTP+ I+E+F +I++ +    V+V+ YF+ELY DNL DL F +DN        PPKL++K+D  KMV ++N V+K
Sbjct: 1453 EQFKKETTLRKKYKNELEDLKGAIRVYARCRPMAKYEIERGCKSVVELKDDTSLKLVTQRGEKEFEFDAVFGDNSTQDQVFEDTKRLVESCMDGFNVCLFAYGQTGSGKTFTMTGSP-SMPGLTPKAIDELFRHIDE-RPHCNVRVTTYFVELYNDNLVDLYFVLDNKNKPGIAEPPKLDIKMDAKKMVYIRNAVIK 1647
[Close]
BLAST of mRNA_M-pyrifera_M_contig12526.5112.1 vs. uniprot
Match: A0A067BRV6_SAPPC (Kinesin-like protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BRV6_SAPPC)

HSP 1 Score: 184 bits (468), Expect = 3.440e-53
Identity = 93/174 (53.45%), Postives = 121/174 (69.54%), Query Frame = 1 
Query:  202 MKGKIRVYARCRPFAQYELDQDCKRVVRFLDEATVEVEGHHGAKQFVFDSVFSEDQGQAAIFQDTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGGQGEQRGLTPRVIEEIFGNIEQAKGAIEVKVSCYFIELYLDNLRDLLFAMDNPRGNPPKLEVKLDTNKMVVVKNVVVK 723
            MKGKIRVY RCRP +  ELD+ C   V+FLDE T+E+E   G K F +D VF+    Q  +F+DT+NL+QSALDG+NVC+FAYGQTGSGKT+TMTG   +  G+TPR+I+ +F + +  KG   +K   Y +ELY D L DL F +DN     PKLE+K +   MVVV+N+VVK
Sbjct:    1 MKGKIRVYCRCRPMSGSELDRGCHSAVKFLDEYTLELETPRGPKSFAYDQVFNPSNTQDQVFEDTKNLLQSALDGYNVCIFAYGQTGSGKTFTMTG-TADHPGITPRLIDLMFKSGDALKGNNTIKYEAYMLELYNDALIDLFFQLDNHPDKAPKLEIKKNDKGMVVVQNIVVK 173
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12526.5112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSQ9_ECTSI2.040e-11879.50Similar to kinesin-C n=1 Tax=Ectocarpus siliculosu... [more]
A0A6V1MSS8_HETAK5.370e-7754.58Kinesin-like protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1U107_9STRA3.540e-6851.77Kinesin-like protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A836C7Z6_9STRA9.040e-6662.29Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A482SJC9_9ARCH1.570e-5746.64Kinesin motor domain-containing protein n=1 Tax=ar... [more]
A0A1V9YU11_9STRA2.170e-5548.25Kinesin n=1 Tax=Thraustotheca clavata TaxID=74557 ... [more]
A0A7S1CA28_9STRA2.200e-5449.25Kinesin-like protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S0U2Q0_HEMAN1.150e-5349.52Kinesin-like protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S3H8M4_9STRA1.250e-5348.73Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A067BRV6_SAPPC3.440e-5353.45Kinesin-like protein n=1 Tax=Saprolegnia parasitic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12526contigM-pyrifera_M_contig12526:1890..7229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.0
Seed ortholog evalue5e-104
Seed eggNOG ortholog2880.D8LSQ9
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons5
Model size723
Cds size723
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12526.5112.1prot_M-pyrifera_M_contig12526.5112.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12526 1890..7229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.642841-CDS-M-pyrifera_M_contig12526:1889..20661622815768.642841-CDS-M-pyrifera_M_contig12526:1889..2066Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12526 1890..2066 +
1692277560.5455084-CDS-M-pyrifera_M_contig12526:1889..20661692277560.5455084-CDS-M-pyrifera_M_contig12526:1889..2066Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12526 1890..2066 +
1622815768.6571853-CDS-M-pyrifera_M_contig12526:2478..25491622815768.6571853-CDS-M-pyrifera_M_contig12526:2478..2549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12526 2479..2549 +
1692277560.5553675-CDS-M-pyrifera_M_contig12526:2478..25491692277560.5553675-CDS-M-pyrifera_M_contig12526:2478..2549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12526 2479..2549 +
1622815768.678843-CDS-M-pyrifera_M_contig12526:2865..30421622815768.678843-CDS-M-pyrifera_M_contig12526:2865..3042Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12526 2866..3042 +
1692277560.5635295-CDS-M-pyrifera_M_contig12526:2865..30421692277560.5635295-CDS-M-pyrifera_M_contig12526:2865..3042Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12526 2866..3042 +
1622815768.6920428-CDS-M-pyrifera_M_contig12526:4989..51371622815768.6920428-CDS-M-pyrifera_M_contig12526:4989..5137Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12526 4990..5137 +
1692277560.5742328-CDS-M-pyrifera_M_contig12526:4989..51371692277560.5742328-CDS-M-pyrifera_M_contig12526:4989..5137Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12526 4990..5137 +
1622815768.70433-CDS-M-pyrifera_M_contig12526:7079..72291622815768.70433-CDS-M-pyrifera_M_contig12526:7079..7229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12526 7080..7229 +
1692277560.5866776-CDS-M-pyrifera_M_contig12526:7079..72291692277560.5866776-CDS-M-pyrifera_M_contig12526:7079..7229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12526 7080..7229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12526.5112.1

>prot_M-pyrifera_M_contig12526.5112.1 ID=prot_M-pyrifera_M_contig12526.5112.1|Name=mRNA_M-pyrifera_M_contig12526.5112.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=241bp
MFRQVSTMGTMDEELQVLRTRAEEAVRLQSELKKVIANTDRVEALYQQEQ
ASQKSCFHAKYWNMMEDMKGKIRVYARCRPFAQYELDQDCKRVVRFLDEA
TVEVEGHHGAKQFVFDSVFSEDQGQAAIFQDTRNLVQSALDGFNVCVFAY
GQTGSGKTWTMTGGQGEQRGLTPRVIEEIFGNIEQAKGAIEVKVSCYFIE
LYLDNLRDLLFAMDNPRGNPPKLEVKLDTNKMVVVKNVVVK
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mRNA from alignment at M-pyrifera_M_contig12526:1890..7229+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12526.5112.1 ID=mRNA_M-pyrifera_M_contig12526.5112.1|Name=mRNA_M-pyrifera_M_contig12526.5112.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5340bp|location=Sequence derived from alignment at M-pyrifera_M_contig12526:1890..7229+ (Macrocystis pyrifera P11B4 male)
ATGTTTCGACAGGTTTCTACGATGGGCACCATGGACGAAGAACTGCAGGT
TCTGAGAACCCGGGCTGAGGAAGCGGTCCGCCTGCAGTCCGAGCTGAAGA
AAGTCATAGCGAACACAGACCGCGTGGAGGCGCTGTACCAGCAGGAACAG
GCAAGCCAAAAATCTTGTTTTCACGCTGTGCAGTCAGCAACTCTCGAATT
TTTCATTGAAACCTCCCTTTCGCATTGCACCCGCATTTCGAGAACAAAGT
ACTTGGAACTTGTGTGGGATCGACGTATCGCGCGGTTATCAAAGAGTTAC
TCGTATTAAGACCACACACAGGCAGTTCAGCTGTGCCTGCTCTGGTGTCC
CCCGCGCTCAAATGACTAAGGCAAGCAACTACTACGGGGGCCCATAGTAA
ACAGGACCAAATATTGTTAGTAAAAATAAGTAAATATATAGTTTTTCGTG
TGTACCGTAGGTCCTATTTACTATGGTCCCCCGTAATACTGAGTACGACC
CCCCCGCGCCCCCCCCCCCCGATGTTTTGTTCTTATCGGTGCCTTCCTGT
TTCGTCGGTTGTATGTGCGATCTGCAGGTCTTACGGAAGAAGTACTGGAA
CATGATGGAGGACATGAAGGGCAAGATCAGGGTGTACGCGCGCTGCAGGC
CGTTTGCGCAGTGAGTGGCGGTGGCCGGTTTGGGGGGGGGGACAAGCGGC
ATACTGGTATATTCTAAGCATGAAAACTGGTCAGTTACAAGAGATGCTGG
ACTCGAACCTTGAAAAAACCTCTGGACACAGGTACCGCTGTAAGTTTGCT
GTTTTTTAAAAACGTGCGCCAACAACAACCGCGGCGATAGAAAACACTAC
AAATGATGTTCCTTTTCCTGTTCGCGAACCAATCACATGCGCGTGGTGTG
TGATGGCTGGCGATGGTCCTTCCTTCGACACGTCCCGAACATCTGACTGG
CTGATGTGCGACGTGAAAACCAACAGATACGAGCTGGATCAAGACTGCAA
GAGAGTCGTTCGCTTCTTGGACGAGGCGACGGTGGAGGTGGAAGGGCACC
ACGGAGCGAAGCAGTTCGTGTTCGATTCGGTCTTCTCGGAAGACCAAGGC
CAAGCCGCCATCTTCCAGGACACCAGGAACCTTGTCCAGTCCGCCCTTGA
CGGGTGAGAGACACGAAAACACGAGCAGCTGGGCGAACTTGTTGCCGGAT
TTTTTTTTGTACCGTGACCCCTCTCGCTGCTCGGGTGAGAAACCATAGTA
ATATCCACGCGTCAGACAGTAGATCACGGTCTGCAGATAGATCATCTAGA
TCCTAAATCAGCCGTTATGAAATGTTTTATGTGCAGGATCTATCTGTACA
GTACAGATCCAACCCAGGAAAACATGCGCTAGATCATGCAGGTTATGCGG
CTCCTACCCGTCGACTTGAGCTACACACTACTGGTAGGTCAGACATGATC
GGGAGTAGATCTGCCTCGAGCGATCTAGATCATAAACTGTGGGAATCGAT
GATCTGTAGATGATCTGTAGATGATTTGTCTGTCCGAGGTGGGTGCGTAA
ATATCTCAGAACCCACGGTGGACCCAAAAGCCACATACCGATATACCGGG
ATCCTCTCTATCTGATTACTAAACCCTCTAGGACCTCCGAGGATGCGACC
AAGACAAACCTAAGTTTGGCCCTATCAACCGTCCACGAGTTGTACGCAGT
ACGGGTATCATCTGGGTCGGACATCATTTTTTTTTTTTTCCTCATCCCCC
CTCCCCTCCAAAATTATGCAGCGGATGGCGCCGTAATCGTGACCTTTTCT
CCGAGTCAAATTCCGTTTTTATTTTTCGCCCCCCTCTGATTTTTCCCCAA
AAGAGGATTTGTAAGTCGTAACCATTTCATGTTGCGTCTATACTTTTGAG
AAAAATTCCGGTTTGGAAAAAAAAAAAAAAAAATCATGATCCTATTCTGC
GAACCAATTTTCTTACCTTTTCTCTTTTCGGTTCTGACTACTACAACTAA
TATATATTATTACCATGTGCGCTTTTTCCGAGGTACCATAGTAGTACATA
GCAATACATATTAATACTACTGTAATCAGAACCCACGACGGACCCCAAAA
AAGCAGGCATCGCCCCAATGTTCACACAGCATATTTTGGGTCTAGTTACC
GTGTCCGCCCGCACCACTGTGTGTGTTCTCGTGTAGAGTTCCCCGATAAA
AGGACTGCAAATTTCGTCCTGCACGATAATCTAACGAAGCTCTCTCCCCA
GAAACGTGAGTGTATATATACCAGGTAGCTGTGCTTAAGGCCGACTACGT
TCAGAGCAGTGTCCTACGCCATTCAAGAGCGTTTGTTTTTTCGGGTGGCC
GCGATCCTGTCTGCCTGAAAAAAATATATACATATATATATATATATATA
TATATATATATCCACTGCAGGAAATATGCCTCCGTGCACGACGGCACGTG
AGCAGCCGCGGGGGTCGCAGGGTGAAAGTACTCAGCCCTCAAGCCCGGTC
CTTTCCGGCCCGCTTTGACTCCCTGAGAAAAAGACCGGAGTTTTTTTCGA
GGCCGAGTATGCGGTGGTTGCGGCCGCGTTTCAACATTGCACTTTTTCGC
TTTTTGCATTCATCTTGTGCCCGCGCTGATGGTATGGTTGATCGGGTTCG
TTCCAGGAGTTTCCTTCAAAGCTCTCATTGCAGTGGTGGGGTACATCTTC
TGCTATTGGCTCGCTTCAATCAGTTCGAAAGAGATTTTTTTTACACTCCT
GGGACGAAGCTGTTTGGGCGATGCCGGCCCCGTGAGAAAAACACGCGGGC
GGGGCACAGATCGGCAACAATCCCTCTTTTTGCTGGTCGGGTTTTCGTAT
CACAGTGACCTTCTCCCTTTTATCAGACGATTTTTATTACTCGATCGGTT
TCACCCTTTCAAAAGCGGCTGTTATCAATAGTAGACACATGTTTTCTCTT
TTTTCGAGAACGCAGGACCAACGAATGGTGTGTGAAAACTACAAAGCTAT
CGGCTGACGCTGCTGTTCCCTTCCACCCCCCTCGCCCTGCCCCCTTCCTC
CCCTCGAAACACCCCTCCCCCGTGTTGTATCCCGTCGACGCTTTGGTCAG
GTTCAACGTTTGTGTGTTCGCGTACGGGCAGACCGGTTCGGGCAAGACGT
GGACGATGACCGGGGGGCAGGGGGAGCAGCGCGGTCTAACCCCGAGGGTG
ATAGAGGAAATCTTCGGCAACATTGAACAGGCCAAGGGCGCCATCGAGGT
ATCCACAACAGCTGTGGTATCTATTGCGTTTTTTTTGCGGTTCAGGTTTT
CGATCCTAAGGCGGCGCGCGTGCCACGATAGGGGTGAAGTGGTGCCGGTT
GCCTCCATAGTGCCGGTGCATATGCGCCAGCCAATAGTACCGGCACTATC
CGTAGCGGCGGCTGGCACTCCTCCGCAAACTGGCCGCACCAATCAGCGCC
AAGCGATTTCCCAGGCACGAAGTATAGCGGGCAGCCGTCACTACTCAACC
CTTACTACAATATATTGCTGGGGACCATAGCGCCAAGCCATTTCCCAGGC
ACAAAGTATAGCGGGCGGCCGTCTACACTCAACCCTTACCATAATATATT
ACGGGGGGCCATAGTAAATAGGACCTACGGTACGCAAAAAAAAACTATAT
ATTTCGATATTTTTACGAACAATATGTGGTCCTATTTACTATGGTCCCCC
GGACTAGAGGGACCGGCACTGCTGTTATAGCAACTTTAGGGCTCCCTCCT
CAAGCGAGAAACTGCCAAATCTGGTTTGTGTCTCACGGTATTGTTCGCCA
TACGCCTGCTGTAGACCATGGAGTTCTTCTTCGGGTCAAAGCGAACTATT
TTTGTTGACGAAAAAAAGATGCACCGCTCTGGGCGTAAACATAACGACCG
TTGCGTCTTCCCATTTATGTGTAAACGATCCTTTTATTTCCGCCCATCAT
GTGCTTACCGTATAACACTATCACACTAGAGTGATAAGATAACACACCCC
CTCGGACGATTTTCAAAGCTGGGGTTGTCTCGACAACGTACTGAGTACAC
CCAGCGAGCGATGCCGCTATGCAACCTTCTCGACGAAATCGTCCCTAAGC
CACCATTTTCGTCGTTGTGTGCCCCCCTTAAGGCATGGTTTTGGAGGAAA
CCGGGTCTGAAATTCGCCCCGTGAGGTGTATTATCTTGGGTGCTACACGG
TAAGTAGTTTGTTGATTATGGCAAGGTGGAAGTAATTTGGTTGATTATAA
TGCGGTCGGAGAGATTTTGTTGATTACAATGAGGTGGAGGTGGTTTTTGT
TGATTTCAACAAGATGGAAGCGGTTCTGTTGATTTGTAAGGTGGCGAGCA
GCACTCAGTTTTTGTTGATAAACTAGGTGCAAGTGGTCTTTGTCGATTGT
ATCAAGATGGAAGCAGCAGTTTTGCTTGATTTATACAGCGGCAAGCAGTA
CGTACAGTAGTTCGTGTTGATTTCTCAGGTGGCGAGTAGATTTGTCTGTA
CGTAAGGTGGAAGTGGTTCTGTCGATCGCCACTCTGTGCGGAAATGTAAA
GAGCTTTTAGAGATAAATATTAAGACCAACCGGTCCTTGTAATTGCGCCC
AGGATACTGTAAGGTTGAAACAGTTTCATCGTTCCCTTTGTTCAGGTGGA
AGTAGTTTTGGCTGTTGTAGGTTGCTACCCCACAAGCCCACACCAAGTCA
CAAGTTTTCACACACCGCCCGACGGATCCCCGGTCCGTACTTCCACGATC
TAGAATTTTTCAGGGCAGACGATCTGTATGATCTGTATGATCTGTATGAT
CTGTATAGTCTGTATAACCTGTATGATCTCTATGATCCGTATGATAAATA
TATATATCTGTATGATCTGTATGATTCGTATGATCTAGCTCATGTTGCCG
GTTGGGAGCCATATAACCTGCATGATCTACGGCAGCATGTTTCCTGTGTT
GGATCTGTACTATTTATCGCACAGACGCTGCACAGCATATCACAACGGCA
GGATAGGATCTAGATGATCTGTACTATACAGATCCTGCGCAACACATTAT
AGTTGCAGGTTAGGGATCTAGATGATCTAGATCGTGGTCTGACCCGAACG
AGTTGGAAATAATTTCACAGGGAGGAATACTCTTTTACTATTTTTTTGCG
GTTCAACCCCGGCACTAAGCGCCGTCGTCCTCTGCTCCAGGTCAAGGTAT
CCTGCTACTTTATCGAGCTGTATCTCGACAATCTGCGGGACCTGCTGTTC
GCGATGGATAACCCTCGGGGAAATCCGCCGAAGCTTGAGGTCAAGCTGGA
CACCAACAAGATGGTTGTTGTGAAGAACGTGGTCGTTAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12526:1890..7229+

>mRNA_M-pyrifera_M_contig12526.5112.1 ID=mRNA_M-pyrifera_M_contig12526.5112.1|Name=mRNA_M-pyrifera_M_contig12526.5112.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1446bp|location=Sequence derived from alignment at M-pyrifera_M_contig12526:1890..7229+ (Macrocystis pyrifera P11B4 male)
ATGTTTCGACAGGTTTCTACGATGGGCACCATGGACGAAGAACTGCAGGT
TCTGAGAACCCGGGCTGAGGAAGCGGTCCGCCTGCAGTCCGAGCTGAAGA
AAGTCATAGCGAACACAGACCGCGTGGAGGCGCTGTACCAGCAGGAACAG
GCAAGCCAAAAATCTTGTTTTCACGCTATGTTTCGACAGGTTTCTACGAT
GGGCACCATGGACGAAGAACTGCAGGTTCTGAGAACCCGGGCTGAGGAAG
CGGTCCGCCTGCAGTCCGAGCTGAAGAAAGTCATAGCGAACACAGACCGC
GTGGAGGCGCTGTACCAGCAGGAACAGGCAAGCCAAAAATCTTGTTTTCA
CGCTAAGTACTGGAACATGATGGAGGACATGAAGGGCAAGATCAGGGTGT
ACGCGCGCTGCAGGCCGTTTGCGCAAAGTACTGGAACATGATGGAGGACA
TGAAGGGCAAGATCAGGGTGTACGCGCGCTGCAGGCCGTTTGCGCAATAC
GAGCTGGATCAAGACTGCAAGAGAGTCGTTCGCTTCTTGGACGAGGCGAC
GGTGGAGGTGGAAGGGCACCACGGAGCGAAGCAGTTCGTGTTCGATTCGG
TCTTCTCGGAAGACCAAGGCCAAGCCGCCATCTTCCAGGACACCAGGAAC
CTTGTCCAGTCCGCCCTTGACGGATACGAGCTGGATCAAGACTGCAAGAG
AGTCGTTCGCTTCTTGGACGAGGCGACGGTGGAGGTGGAAGGGCACCACG
GAGCGAAGCAGTTCGTGTTCGATTCGGTCTTCTCGGAAGACCAAGGCCAA
GCCGCCATCTTCCAGGACACCAGGAACCTTGTCCAGTCCGCCCTTGACGG
GTTCAACGTTTGTGTGTTCGCGTACGGGCAGACCGGTTCGGGCAAGACGT
GGACGATGACCGGGGGGCAGGGGGAGCAGCGCGGTCTAACCCCGAGGGTG
ATAGAGGAAATCTTCGGCAACATTGAACAGGCCAAGGGCGCCATCGAGGT
TCAACGTTTGTGTGTTCGCGTACGGGCAGACCGGTTCGGGCAAGACGTGG
ACGATGACCGGGGGGCAGGGGGAGCAGCGCGGTCTAACCCCGAGGGTGAT
AGAGGAAATCTTCGGCAACATTGAACAGGCCAAGGGCGCCATCGAGGTCA
AGGTATCCTGCTACTTTATCGAGCTGTATCTCGACAATCTGCGGGACCTG
CTGTTCGCGATGGATAACCCTCGGGGAAATCCGCCGAAGCTTGAGGTCAA
GCTGGACACCAACAAGATGGTTGTTGTGAAGAACGTGGTCGTTAAGGTCA
AGGTATCCTGCTACTTTATCGAGCTGTATCTCGACAATCTGCGGGACCTG
CTGTTCGCGATGGATAACCCTCGGGGAAATCCGCCGAAGCTTGAGGTCAA
GCTGGACACCAACAAGATGGTTGTTGTGAAGAACGTGGTCGTTAAG
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