mRNA_M-pyrifera_M_contig125249.5110.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125249.5110.1
Unique NamemRNA_M-pyrifera_M_contig125249.5110.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig125249.5110.1 vs. uniprot
Match: A0A7J6SU08_PEROL (Glyco_trans_2-like domain-containing protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SU08_PEROL)

HSP 1 Score: 128 bits (321), Expect = 2.870e-32
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:    4 LIQDTCLLIACHESCFSPGAERTFTSTLRSALLVFPASAIFVCDNGRVDNPVDRTQEVCEKVSKDRYPDGSQKINYLYIPEGNKSHAMYWTTEHYIPELVRRGESVDFQYAVIVDDD 354
            + QD CL+IACH+S  +     TFT TLRSAL VFP S IFVCDNGR   P D TQ   ++V    +PD    INYLY+PEGNK+ A YW  +++IP L R+G   DF+YAVI+DDD
Sbjct:  153 MTQDVCLMIACHQSVMTEERYETFTGTLRSALQVFPPSHIFVCDNGRTYTPFDDTQWAAQQV----HPD----INYLYVPEGNKTFAFYWCNKYWIPYLARQGRVADFRYAVIIDDD 261
[Close]
BLAST of mRNA_M-pyrifera_M_contig125249.5110.1 vs. uniprot
Match: A0A7J6SFP1_PEROL (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SFP1_PEROL)

HSP 1 Score: 128 bits (321), Expect = 5.620e-32
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:    4 LIQDTCLLIACHESCFSPGAERTFTSTLRSALLVFPASAIFVCDNGRVDNPVDRTQEVCEKVSKDRYPDGSQKINYLYIPEGNKSHAMYWTTEHYIPELVRRGESVDFQYAVIVDDD 354
            + QD CL+IACH+S  +     TFT TLRSAL VFP S IFVCDNGR   P D TQ   ++V    +PD    INYLY+PEGNK+ A YW  +++IP L R+G   DF+YAVI+DDD
Sbjct:  627 MTQDVCLMIACHQSVMTEERYETFTGTLRSALQVFPPSHIFVCDNGRTYTPFDDTQWAAQQV----HPD----INYLYVPEGNKTFAFYWCNKYWIPYLARQGRVADFRYAVIIDDD 735
[Close]
BLAST of mRNA_M-pyrifera_M_contig125249.5110.1 vs. uniprot
Match: A0A7J6TBK3_PEROL (Glyco_trans_2-like domain-containing protein n=4 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6TBK3_PEROL)

HSP 1 Score: 128 bits (321), Expect = 5.660e-32
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:    4 LIQDTCLLIACHESCFSPGAERTFTSTLRSALLVFPASAIFVCDNGRVDNPVDRTQEVCEKVSKDRYPDGSQKINYLYIPEGNKSHAMYWTTEHYIPELVRRGESVDFQYAVIVDDD 354
            + QD CL+IACH+S  +     TFT TLRSAL VFP S IFVCDNGR   P D TQ   ++V    +PD    INYLY+PEGNK+ A YW  +++IP L R+G   DF+YAVI+DDD
Sbjct:  541 MTQDVCLMIACHQSVMTEERYETFTGTLRSALQVFPPSHIFVCDNGRTYTPFDDTQWAAQQV----HPD----INYLYVPEGNKTFAFYWCNKYWIPYLARQGRVADFRYAVIIDDD 649
[Close]
BLAST of mRNA_M-pyrifera_M_contig125249.5110.1 vs. uniprot
Match: A0A7J6M2L1_PEROL (Glyco_trans_2-like domain-containing protein n=4 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6M2L1_PEROL)

HSP 1 Score: 128 bits (321), Expect = 5.750e-32
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:    4 LIQDTCLLIACHESCFSPGAERTFTSTLRSALLVFPASAIFVCDNGRVDNPVDRTQEVCEKVSKDRYPDGSQKINYLYIPEGNKSHAMYWTTEHYIPELVRRGESVDFQYAVIVDDD 354
            + QD CL+IACH+S  +     TFT TLRSAL VFP S IFVCDNGR   P D TQ   ++V    +PD    INYLY+PEGNK+ A YW  +++IP L R+G   DF+YAVI+DDD
Sbjct:  851 MTQDVCLMIACHQSVMTEERYETFTGTLRSALQVFPPSHIFVCDNGRTYTPFDDTQWAAQQV----HPD----INYLYVPEGNKTFAFYWCNKYWIPYLARQGRVADFRYAVIIDDD 959
[Close]
BLAST of mRNA_M-pyrifera_M_contig125249.5110.1 vs. uniprot
Match: C5KEZ2_PERM5 (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KEZ2_PERM5)

HSP 1 Score: 123 bits (308), Expect = 1.300e-31
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 1 
Query:    1 GLIQDTCLLIACHESCFSPGAERTFTSTLRSALLVFPASAIFVCDNGRVDNPVDRTQEVCEKVSKDRYPDGSQKINYLYIPEGNKSHAMYWTTEHYIPELVRRGESVDFQYAVIVDDD 354
            G+ ++ CL+IACH+S  +     TFT+TLR+AL+VFP S IFVCDNG    PVD  Q   ++V    +PD    INYLY+PEGNK+ A YW  +++IP LV+ G   DF+YAVI+DDD
Sbjct:   76 GMTREVCLMIACHQSTMTEERYETFTATLRAALMVFPPSHIFVCDNGVSPIPVDDNQWATQQV----HPD----INYLYVPEGNKTFAFYWCNKYWIPYLVQNGRVTDFKYAVIIDDD 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig125249.5110.1 vs. uniprot
Match: A0A7J6U7I5_PEROL (Uncharacterized protein (Fragment) n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6U7I5_PEROL)

HSP 1 Score: 125 bits (314), Expect = 2.620e-31
Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = 1 
Query:    1 GLIQDTCLLIACHESCFSPGAERTFTSTLRSALLVFPASAIFVCDNGRVDNPVDRTQEVCEKVSKDRYPDGSQKINYLYIPEGNKSHAMYWTTEHYIPELVRRGESVDFQYAVIVDDD 354
            G+ +D CLLIACH+S  +     TFT+TLR+AL+VFP S IFVCDNG    PVD  Q   ++V    +PD    INYLY+PEGNK+ A YW  +++IP LV+ G   DF+YAVI+DDD
Sbjct:  314 GMTRDVCLLIACHQSTMTEERYETFTATLRAALMVFPPSHIFVCDNGVSPVPVDDNQWATQQV----HPD----INYLYVPEGNKTFAFYWCNKYWIPYLVQNGRVTDFKYAVIIDDD 423
[Close]
BLAST of mRNA_M-pyrifera_M_contig125249.5110.1 vs. uniprot
Match: A0A7J6P3W1_PEROL (Glyco_trans_2-like domain-containing protein n=6 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6P3W1_PEROL)

HSP 1 Score: 125 bits (314), Expect = 4.990e-31
Identity = 63/118 (53.39%), Postives = 81/118 (68.64%), Query Frame = 1 
Query:    1 GLIQDTCLLIACHESCFSPGAERTFTSTLRSALLVFPASAIFVCDNGRVDNPVDRTQEVCEKVSKDRYPDGSQKINYLYIPEGNKSHAMYWTTEHYIPELVRRGESVDFQYAVIVDDD 354
            G+ +D CLLIACH+S  +     TFT+TLR+AL+VFP S IFVCDNG    PVD  Q   ++V    +PD    INYLY+PEGNK+ A YW  +++IP LV+ G   DF+YAVI+DDD
Sbjct:  537 GMTRDVCLLIACHQSTMTEERYETFTATLRAALMVFPPSHIFVCDNGVSPVPVDDNQWATQQV----HPD----INYLYVPEGNKTFAFYWCNKYWIPYLVQNGRVTDFKYAVIIDDD 646
[Close]
BLAST of mRNA_M-pyrifera_M_contig125249.5110.1 vs. uniprot
Match: A0A7J6LPX8_PERCH (Glyco_trans_2-like domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6LPX8_PERCH)

HSP 1 Score: 123 bits (309), Expect = 2.390e-30
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:    4 LIQDTCLLIACHESCFSPGAERTFTSTLRSALLVFPASAIFVCDNGRVDNPVDRTQEVCEKVSKDRYPDGSQKINYLYIPEGNKSHAMYWTTEHYIPELVRRGESVDFQYAVIVDDD 354
            + +D CL+IACH+S  +     TFT TLR+AL VFP S IFVCDNGR   P D TQ   ++V    +PD    INYLY+PEGNK+ A YW  +++IP LV+ G   DF+YAVI+DDD
Sbjct:  820 MTRDVCLMIACHQSVMTEERYETFTGTLRAALQVFPPSHIFVCDNGRTLTPFDDTQWATQQV----HPD----INYLYVPEGNKTFAFYWCNKYWIPYLVQNGRVSDFKYAVIIDDD 928
[Close]
BLAST of mRNA_M-pyrifera_M_contig125249.5110.1 vs. uniprot
Match: C5LTF8_PERM5 (Glyco_trans_2-like domain-containing protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LTF8_PERM5)

HSP 1 Score: 123 bits (308), Expect = 3.220e-30
Identity = 61/118 (51.69%), Postives = 81/118 (68.64%), Query Frame = 1 
Query:    1 GLIQDTCLLIACHESCFSPGAERTFTSTLRSALLVFPASAIFVCDNGRVDNPVDRTQEVCEKVSKDRYPDGSQKINYLYIPEGNKSHAMYWTTEHYIPELVRRGESVDFQYAVIVDDD 354
            G+ ++ CL+IACH+S  +     TFT+TLR+AL+VFP S IFVCDNG    PVD  Q   ++V    +PD    INYLY+PEGNK+ A YW  +++IP LV+ G   DF+YAVI+DDD
Sbjct:  121 GMTREVCLMIACHQSTMTEERYETFTATLRAALMVFPPSHIFVCDNGVSPIPVDDNQWATQQV----HPD----INYLYVPEGNKTFAFYWCNKYWIPYLVQNGRVTDFKYAVIIDDD 230
[Close]
BLAST of mRNA_M-pyrifera_M_contig125249.5110.1 vs. uniprot
Match: C5KFY2_PERM5 (Uncharacterized protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KFY2_PERM5)

HSP 1 Score: 122 bits (305), Expect = 8.140e-30
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:    4 LIQDTCLLIACHESCFSPGAERTFTSTLRSALLVFPASAIFVCDNGRVDNPVDRTQEVCEKVSKDRYPDGSQKINYLYIPEGNKSHAMYWTTEHYIPELVRRGESVDFQYAVIVDDD 354
            +  D CL+IACH+S  +     TFT+TLRSAL VFP S IFVCDNGR   P D TQ   ++V    +PD    INYLY+PEGNK+ A YW  +++IP L R+G   +F+YAVI+DDD
Sbjct:  555 MTHDVCLMIACHQSVMTEERYETFTATLRSALQVFPPSHIFVCDNGRSYAPFDDTQWAAQQV----HPD----INYLYVPEGNKTFAFYWCNKYWIPFLTRQGRVREFRYAVIIDDD 663
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125249.5110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J6SU08_PEROL2.870e-3254.70Glyco_trans_2-like domain-containing protein (Frag... [more]
A0A7J6SFP1_PEROL5.620e-3254.70Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
A0A7J6TBK3_PEROL5.660e-3254.70Glyco_trans_2-like domain-containing protein n=4 T... [more]
A0A7J6M2L1_PEROL5.750e-3254.70Glyco_trans_2-like domain-containing protein n=4 T... [more]
C5KEZ2_PERM51.300e-3151.69Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
A0A7J6U7I5_PEROL2.620e-3153.39Uncharacterized protein (Fragment) n=2 Tax=Perkins... [more]
A0A7J6P3W1_PEROL4.990e-3153.39Glyco_trans_2-like domain-containing protein n=6 T... [more]
A0A7J6LPX8_PERCH2.390e-3052.99Glyco_trans_2-like domain-containing protein n=1 T... [more]
C5LTF8_PERM53.220e-3051.69Glyco_trans_2-like domain-containing protein n=1 T... [more]
C5KFY2_PERM58.140e-3052.99Uncharacterized protein n=1 Tax=Perkinsus marinus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125249contigM-pyrifera_M_contig125249:1..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.5
Seed ortholog evalue6.3e-07
Seed eggNOG ortholog61459.XP_007779298.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyltransferase like family 2
EggNOG OGs20G6R@147545,28K80@1,2QSNQ@2759,38R73@33154,3NZUH@4751,3QSIF@4890
COG Functional cat.I
Best tax levelEurotiomycetes
Best eggNOG OGNA|NA|NA
Exons3
Model size354
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125249.5110.1prot_M-pyrifera_M_contig125249.5110.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125249 1..497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.548583-CDS-M-pyrifera_M_contig125249:0..421622815768.548583-CDS-M-pyrifera_M_contig125249:0..42Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125249 1..42 -
1692277560.5088465-CDS-M-pyrifera_M_contig125249:0..421692277560.5088465-CDS-M-pyrifera_M_contig125249:0..42Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125249 1..42 -
1622815768.560148-CDS-M-pyrifera_M_contig125249:113..1781622815768.560148-CDS-M-pyrifera_M_contig125249:113..178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125249 114..178 -
1692277560.518071-CDS-M-pyrifera_M_contig125249:113..1781692277560.518071-CDS-M-pyrifera_M_contig125249:113..178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125249 114..178 -
1622815768.5702963-CDS-M-pyrifera_M_contig125249:250..4971622815768.5702963-CDS-M-pyrifera_M_contig125249:250..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125249 251..497 -
1692277560.5258434-CDS-M-pyrifera_M_contig125249:250..4971692277560.5258434-CDS-M-pyrifera_M_contig125249:250..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125249 251..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125249.5110.1

>prot_M-pyrifera_M_contig125249.5110.1 ID=prot_M-pyrifera_M_contig125249.5110.1|Name=mRNA_M-pyrifera_M_contig125249.5110.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
GLIQDTCLLIACHESCFSPGAERTFTSTLRSALLVFPASAIFVCDNGRVD
NPVDRTQEVCEKVSKDRYPDGSQKINYLYIPEGNKSHAMYWTTEHYIPEL
VRRGESVDFQYAVIVDDD
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mRNA from alignment at M-pyrifera_M_contig125249:1..497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125249.5110.1 ID=mRNA_M-pyrifera_M_contig125249.5110.1|Name=mRNA_M-pyrifera_M_contig125249.5110.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=497bp|location=Sequence derived from alignment at M-pyrifera_M_contig125249:1..497- (Macrocystis pyrifera P11B4 male)
GGGCTGATCCAGGACACGTGCCTGCTCATTGCGTGCCACGAGTCCTGCTT
TTCGCCTGGAGCAGAGCGAACGTTCACGTCCACGCTGCGATCTGCGCTGC
TGGTTTTCCCAGCCAGCGCCATTTTCGTGTGCGACAACGGGCGGGTAGAC
AATCCTGTAGACCGCACGCAAGAGGTGTGCGAGAAGGTGAGCAAGGATCG
ATACCCAGATGGCAGCCAGAAGATCAACTACCTGTACATCCCCGAAGGTG
ACCAGTGCGCAGTTGTCTGTGGTCTGTTTCTCAGCGTGTTCACGCACGCC
TGTGCTTGCTGTGACCCAGGTAACAAGTCCCATGCGATGTACTGGACGAC
GGAACACTACATCCCGGAGCTCGTCCGCAGAGGAGTGGGTACTGGCGTGC
GCCACCCGCTGTGTAGCGACGTCGCTCACGCAGCCGTTTGTCCCCGTGCG
TACAGGAGTCTGTGGATTTCCAGTACGCGGTAATCGTCGACGACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125249:1..497-

>mRNA_M-pyrifera_M_contig125249.5110.1 ID=mRNA_M-pyrifera_M_contig125249.5110.1|Name=mRNA_M-pyrifera_M_contig125249.5110.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig125249:1..497- (Macrocystis pyrifera P11B4 male)
GGGCTGATCCAGGACACGTGCCTGCTCATTGCGTGCCACGAGTCCTGCTT
TTCGCCTGGAGCAGAGCGAACGTTCACGTCCACGCTGCGATCTGCGCTGC
TGGTTTTCCCAGCCAGCGCCATTTTCGTGTGCGACAACGGGCGGGTAGAC
AATCCTGTAGACCGCACGCAAGAGGTGTGCGAGAAGGTGAGCAAGGATCG
ATACCCAGATGGCAGCCAGAAGATCAACTACCTGTACATCCCCGAAGGGG
CTGATCCAGGACACGTGCCTGCTCATTGCGTGCCACGAGTCCTGCTTTTC
GCCTGGAGCAGAGCGAACGTTCACGTCCACGCTGCGATCTGCGCTGCTGG
TTTTCCCAGCCAGCGCCATTTTCGTGTGCGACAACGGGCGGGTAGACAAT
CCTGTAGACCGCACGCAAGAGGTGTGCGAGAAGGTGAGCAAGGATCGATA
CCCAGATGGCAGCCAGAAGATCAACTACCTGTACATCCCCGAAGGTAACA
AGTCCCATGCGATGTACTGGACGACGGAACACTACATCCCGGAGCTCGTC
CGCAGAGGAGTAACAAGTCCCATGCGATGTACTGGACGACGGAACACTAC
ATCCCGGAGCTCGTCCGCAGAGGAGAGTCTGTGGATTTCCAGTACGCGGT
AATCGTCGACGACGACGAGTCTGTGGATTTCCAGTACGCGGTAATCGTCG
ACGACGAC
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