mRNA_M-pyrifera_M_contig125239.5106.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125239.5106.1
Unique NamemRNA_M-pyrifera_M_contig125239.5106.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125239.5106.1 vs. uniprot
Match: A0A6N9BJB8_9PROT (RidA family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N9BJB8_9PROT)

HSP 1 Score: 67.0 bits (162), Expect = 2.290e-12
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   10 MADNDISLSSLMSATLFVTAFHRFPELNAVWDEFFANCENLPTRTAVGATQLPIGAQVEAEFMFY 204
            + D  + L  +MSAT++ TAF RFP +NA W+  F+     P RTAVG   LP+GA VE  F FY
Sbjct:   66 LPDIGLRLEDMMSATIYTTAFERFPAINAAWEAVFSEGVRPPARTAVGVQALPLGATVEIAFEFY 130
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BLAST of mRNA_M-pyrifera_M_contig125239.5106.1 vs. uniprot
Match: A0A0P6R8N8_9RHOB (Uncharacterized protein n=2 Tax=Phaeobacter sp. 11ANDIMAR09 TaxID=1225647 RepID=A0A0P6R8N8_9RHOB)

HSP 1 Score: 58.5 bits (140), Expect = 6.680e-9
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:    1 KGFMADNDISLSSLMSATLFVTAFHRFPELNAVWDEFFANCE--NLPTRTAVGATQLPIGAQVEAEFMFY 204
            +  M +  ++   ++ A +++  F  F   NAVWD+FF      NLP RT VG + LP+GA +EAEF F+
Sbjct:   64 RAMMDEIGLNNEDMVEARVYLADFSSFHNFNAVWDDFFQETSRGNLPARTTVGVSALPLGAAIEAEFSFF 133
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BLAST of mRNA_M-pyrifera_M_contig125239.5106.1 vs. uniprot
Match: A0A285NMK9_9AQUI (2-iminobutanoate/2-iminopropanoate deaminase n=1 Tax=Hydrogenobacter hydrogenophilus TaxID=35835 RepID=A0A285NMK9_9AQUI)

HSP 1 Score: 49.7 bits (117), Expect = 1.130e-5
Identity = 20/54 (37.04%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   37 SLMSATLFVTAFHRFPELNAVWDEFFANCENLPTRTAVGATQLPIGAQVEAEFM 198
            ++   ++++T    FP+LNA++++FF + E  P RT VG   LP+GA VE + +
Sbjct:   69 NIAKVSIYITDLSLFPQLNALYEDFFKDVEVKPARTTVGVNSLPMGAYVEMDII 122
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BLAST of mRNA_M-pyrifera_M_contig125239.5106.1 vs. uniprot
Match: A0A843CQU4_9ARCH (RidA family protein n=1 Tax=Candidatus Methanomethylophilaceae archaeon TaxID=2517205 RepID=A0A843CQU4_9ARCH)

HSP 1 Score: 48.9 bits (115), Expect = 2.020e-5
Identity = 22/55 (40.00%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   28 SLSSLMSATLFVTAFHRFPELNAVWDEFFANCENLPTRTAVGATQLPIGAQVEAE 192
            S+S ++  T+++T    FPE+NAV+ EFF+  E  P R+ +GA+ LP G ++E +
Sbjct:   66 SMSDVLKVTVYITDMAAFPEVNAVYGEFFS--EPYPARSCIGASALPKGVKIEID 118
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BLAST of mRNA_M-pyrifera_M_contig125239.5106.1 vs. uniprot
Match: A0A6H9K067_9BACT (RidA family protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A6H9K067_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 4.210e-5
Identity = 24/60 (40.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   28 SLSSLMSATLFVTAFHRFPELNAVWDEFFANCENLPTRTAVGATQLPIGAQVEAEFMFYV 207
            SL++++  T+F+T    F ++N V+ +FF   +NLP R+AV  + LP+GA+VE E +  V
Sbjct:   69 SLANVVKTTVFMTDLGEFAQMNEVYGQFFK--DNLPARSAVQVSALPLGARVEIEAVALV 126
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125239.5106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6N9BJB8_9PROT2.290e-1247.69RidA family protein n=1 Tax=Alphaproteobacteria ba... [more]
A0A0P6R8N8_9RHOB6.680e-938.57Uncharacterized protein n=2 Tax=Phaeobacter sp. 11... [more]
A0A285NMK9_9AQUI1.130e-537.042-iminobutanoate/2-iminopropanoate deaminase n=1 T... [more]
A0A843CQU4_9ARCH2.020e-540.00RidA family protein n=1 Tax=Candidatus Methanometh... [more]
A0A6H9K067_9BACT4.210e-540.00RidA family protein n=1 Tax=Calditrichaeota bacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125239contigM-pyrifera_M_contig125239:279..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.3244283-CDS-M-pyrifera_M_contig125239:278..5061622815768.3244283-CDS-M-pyrifera_M_contig125239:278..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125239 279..506 -
1692277560.408103-CDS-M-pyrifera_M_contig125239:278..5061692277560.408103-CDS-M-pyrifera_M_contig125239:278..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125239 279..506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.3421519-UTR-M-pyrifera_M_contig125239:506..5151622815768.3421519-UTR-M-pyrifera_M_contig125239:506..515Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125239 507..515 -
1692277560.416987-UTR-M-pyrifera_M_contig125239:506..5151692277560.416987-UTR-M-pyrifera_M_contig125239:506..515Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125239 507..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125239.5106.1prot_M-pyrifera_M_contig125239.5106.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125239 279..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125239.5106.1

>prot_M-pyrifera_M_contig125239.5106.1 ID=prot_M-pyrifera_M_contig125239.5106.1|Name=mRNA_M-pyrifera_M_contig125239.5106.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MADNDISLSSLMSATLFVTAFHRFPELNAVWDEFFANCENLPTRTAVGAT
QLPIGAQVEAEFMFYVPSTAPRESA*
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mRNA from alignment at M-pyrifera_M_contig125239:279..515-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125239.5106.1 ID=mRNA_M-pyrifera_M_contig125239.5106.1|Name=mRNA_M-pyrifera_M_contig125239.5106.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig125239:279..515- (Macrocystis pyrifera P11B4 male)
AAAGGTTTTATGGCGGACAATGATATTTCCCTGTCGAGCCTGATGTCGGC
CACCCTGTTTGTGACCGCGTTCCACCGGTTCCCCGAATTGAATGCCGTCT
GGGATGAGTTTTTCGCAAACTGCGAGAATTTGCCGACAAGAACGGCCGTC
GGGGCGACGCAGTTGCCGATTGGCGCGCAGGTCGAAGCGGAATTTATGTT
CTATGTGCCGTCGACGGCCCCACGAGAGAGTGCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125239:279..515-

>mRNA_M-pyrifera_M_contig125239.5106.1 ID=mRNA_M-pyrifera_M_contig125239.5106.1|Name=mRNA_M-pyrifera_M_contig125239.5106.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig125239:279..515- (Macrocystis pyrifera P11B4 male)
ATGGCGGACAATGATATTTCCCTGTCGAGCCTGATGTCGGCCACCCTGTT
TGTGACCGCGTTCCACCGGTTCCCCGAATTGAATGCCGTCTGGGATGAGT
TTTTCGCAAACTGCGAGAATTTGCCGACAAGAACGGCCGTCGGGGCGACG
CAGTTGCCGATTGGCGCGCAGGTCGAAGCGGAATTTATGTTCTATGTGCC
GTCGACGGCCCCACGAGAGAGTGCATGAATGGCGGACAATGATATTTCCC
TGTCGAGCCTGATGTCGGCCACCCTGTTTGTGACCGCGTTCCACCGGTTC
CCCGAATTGAATGCCGTCTGGGATGAGTTTTTCGCAAACTGCGAGAATTT
GCCGACAAGAACGGCCGTCGGGGCGACGCAGTTGCCGATTGGCGCGCAGG
TCGAAGCGGAATTTATGTTCTATGTGCCGTCGACGGCCCCACGAGAGAGT
GCATGA
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