mRNA_M-pyrifera_M_contig125235.5104.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125235.5104.1
Unique NamemRNA_M-pyrifera_M_contig125235.5104.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125235.5104.1 vs. uniprot
Match: A0A507DXJ7_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DXJ7_9FUNG)

HSP 1 Score: 109 bits (273), Expect = 3.480e-26
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   10 SNGVCPQWCPSGDKFPEPKPVGVNYPGATFKYTMTDGAGKRRVATASQLSQAAG-GLQLPYCLFGLGRTSSYVDYLF 237
            SNGVCP WCPSGDKFP PKP GVNYPGA+FKYT+ +  G+RR   A+QLSQ+    LQ PY LFGLGRT++Y++ LF
Sbjct:  476 SNGVCPAWCPSGDKFPSPKPYGVNYPGASFKYTVLNTEGRRRATQAAQLSQSTYYSLQTPYALFGLGRTNNYIEDLF 552          
BLAST of mRNA_M-pyrifera_M_contig125235.5104.1 vs. uniprot
Match: A0A4P9WEL3_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WEL3_9FUNG)

HSP 1 Score: 100 bits (250), Expect = 4.600e-23
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   13 NGVCPQWCPSGDKFPEPKPVGVNYPGATFKYTMTDGAGKRRVATASQLSQAAG-GLQLPYCLFGLGRTSSYVDYLF 237
            NGVCP WCP+G+KFP P+P GVNY GA+FK+ + D +G+RR    +QLSQ++   LQ PYCLFGLGRT++YV+  F
Sbjct:  483 NGVCPGWCPTGEKFPSPRPYGVNYAGASFKFNVMDTSGQRRATQVAQLSQSSYLSLQTPYCLFGLGRTNNYVEDFF 558          
BLAST of mRNA_M-pyrifera_M_contig125235.5104.1 vs. uniprot
Match: A0A0L0HB21_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HB21_SPIPD)

HSP 1 Score: 99.4 bits (246), Expect = 1.600e-22
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   10 SNGVCPQWCPSGDKFPEPKPVGVNYPGATFKYTMTDGAGKRRVATASQLSQAAG-GLQLPYCLFGLGRTSSYVDYLF 237
            SNGVCP WCP+G K P PKP GVNY GA+FKYT+ D +G RR   A+QLSQ++   LQ PY LFGLGRT++Y++ LF
Sbjct:  477 SNGVCPGWCPNGVKSPVPKPYGVNYAGASFKYTVFDTSGNRRATQAAQLSQSSYFALQTPYSLFGLGRTNNYIEDLF 553          
BLAST of mRNA_M-pyrifera_M_contig125235.5104.1 vs. uniprot
Match: Q54DA0_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54DA0_DICDI)

HSP 1 Score: 98.6 bits (244), Expect = 3.010e-22
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 TMGSNGVCPQWCPSGDKFPEPKPVGVNYPGATFKYTMTDGAGKRRVATASQL-SQAAGGLQLPYCLFGLGRTSSYVDYLFY 240
            T+G NGVC   CP+GDKFP PKP GVN+PG TFK+T TD +G   +   +Q+ S +   LQ PY LFGLGRTS+YVD LF+
Sbjct:  511 TLGLNGVCTTMCPTGDKFPSPKPYGVNFPGGTFKFTYTDLSGNTHIQIGAQMYSSSYMSLQTPYNLFGLGRTSNYVDQLFF 591          
BLAST of mRNA_M-pyrifera_M_contig125235.5104.1 vs. uniprot
Match: F0ZUQ5_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZUQ5_DICPU)

HSP 1 Score: 97.4 bits (241), Expect = 7.520e-22
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 TMGSNGVCPQWCPSGDKFPEPKPVGVNYPGATFKYTMTDGAGKRRVATASQL-SQAAGGLQLPYCLFGLGRTSSYVDYLFY 240
            T+G NGVC   CP+G KFP+PKP GVN+PG TFK+T  D +G+  +   +QL S +   LQ PY LFGLGRTS+YVD LFY
Sbjct:  447 TLGLNGVCATMCPTGKKFPDPKPYGVNFPGGTFKFTYQDLSGRTHIQIGAQLYSSSYMSLQTPYNLFGLGRTSNYVDQLFY 527          
BLAST of mRNA_M-pyrifera_M_contig125235.5104.1 vs. uniprot
Match: A0A507FNK5_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FNK5_9FUNG)

HSP 1 Score: 97.4 bits (241), Expect = 7.540e-22
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 TMGSNGVCPQWCPSGDKFPEPKPVGVNYPGATFKYTMTDGAGKRRVATASQLSQAAG-GLQLPYCLFGLGRTSSYVDYLF 237
            ++ +NGVCP WCP G+KFP PKP GVNYPGAT KYT+TD  G +R    +QL Q++   L +PY   GLGRT++Y++ LF
Sbjct:  450 SLVTNGVCPGWCPEGEKFPNPKPFGVNYPGATLKYTVTDTQGSKRAVQLAQLPQSSYFALNMPYTHAGLGRTNNYIEQLF 529          
BLAST of mRNA_M-pyrifera_M_contig125235.5104.1 vs. uniprot
Match: UPI0006452143 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006452143)

HSP 1 Score: 97.4 bits (241), Expect = 7.630e-22
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 TMGSNGVCPQWCPSGDKFPEPKPVGVNYPGATFKYTMTDGAGKRRVATASQLSQAAG-GLQLPYCLFGLGRTSSYVDYLFY 240
            T+G NGVC   CP+G KFP+PKP GVN+PG TFK+  +D +G   +   +QL Q+A   LQ PY  FGLGRTS+Y+DYLFY
Sbjct:  491 TLGLNGVCTSVCPTGHKFPDPKPYGVNFPGGTFKFIFSDMSGTTHMQIGAQLYQSAYMSLQTPYNFFGLGRTSNYIDYLFY 571          
BLAST of mRNA_M-pyrifera_M_contig125235.5104.1 vs. uniprot
Match: A0A8J4PVY8_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PVY8_9MYCE)

HSP 1 Score: 97.4 bits (241), Expect = 7.670e-22
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 TMGSNGVCPQWCPSGDKFPEPKPVGVNYPGATFKYTMTDGAGKRRVATASQLSQAAG-GLQLPYCLFGLGRTSSYVDYLFY 240
            T+G NGVC   CPSG KFP PKP GVN+PGA FK+T TD +G   +   +QL Q++   LQ PY LFGLGRTS+YVD LF+
Sbjct:  525 TLGLNGVCTTMCPSGKKFPNPKPYGVNFPGAIFKFTYTDLSGTTHIQMGAQLYQSSYMSLQTPYNLFGLGRTSNYVDQLFF 605          
BLAST of mRNA_M-pyrifera_M_contig125235.5104.1 vs. uniprot
Match: A0A152A6P6_9MYCE (Putative integrin alpha FG-GAP repeat-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A6P6_9MYCE)

HSP 1 Score: 96.7 bits (239), Expect = 1.420e-21
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 TMGSNGVCPQWCPSGDKFPEPKPVGVNYPGATFKYTMTDGAGKRRVATASQLSQAAG-GLQLPYCLFGLGRTSSYVDYLFY 240
            T+G NGVC   CPSG KFP+PKP GVN+PGA FK+T +D +G   +   +QL Q++   LQ PY LFGLGRTS+YVD LF+
Sbjct:  494 TLGLNGVCTTMCPSGKKFPDPKPYGVNFPGAIFKFTYSDLSGTTHIQIGAQLYQSSYLSLQTPYNLFGLGRTSNYVDQLFF 574          
BLAST of mRNA_M-pyrifera_M_contig125235.5104.1 vs. uniprot
Match: A0A433D3I6_9FUNG (Uncharacterized protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D3I6_9FUNG)

HSP 1 Score: 95.9 bits (237), Expect = 2.660e-21
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 1
Query:   10 SNGVCPQWCPSGDKFPEPK-PVGVNYPGATFKYTMTDGAGKRRVATASQLSQAAG-GLQLPYCLFGLGRTSSYVDYLF 237
            SNGVCP +CP+  KFP+PK P GV+YPGATFK+T+ D +G +RV   SQ SQAA   LQ PY LFGLGRT++YV+ LF
Sbjct:  515 SNGVCPSFCPTEPKFPDPKVPYGVSYPGATFKFTVLDTSGVKRVQQVSQFSQAAYLSLQTPYMLFGLGRTNNYVEELF 592          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125235.5104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A507DXJ7_9FUNG3.480e-2666.23Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A4P9WEL3_9FUNG4.600e-2359.21Uncharacterized protein n=1 Tax=Blyttiomyces helic... [more]
A0A0L0HB21_SPIPD1.600e-2262.34Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
Q54DA0_DICDI3.010e-2258.02Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
F0ZUQ5_DICPU7.520e-2258.02Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A507FNK5_9FUNG7.540e-2255.00Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
UPI00064521437.630e-2256.79hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4PVY8_9MYCE7.670e-2259.26Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A152A6P6_9MYCE1.420e-2158.02Putative integrin alpha FG-GAP repeat-containing p... [more]
A0A433D3I6_9FUNG2.660e-2162.82Uncharacterized protein n=2 Tax=Jimgerdemannia fla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125235contigM-pyrifera_M_contig125235:3..242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score99.8
Seed ortholog evalue6.2e-19
Seed eggNOG ortholog109760.SPPG_06908T0
KEGG koko:K17257
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
EggNOG OGs39KK5@33154,3P114@4751,KOG4550@1,KOG4550@2759
COG Functional cat.S
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons1
Model size240
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.2484608-CDS-M-pyrifera_M_contig125235:2..2391622815768.2484608-CDS-M-pyrifera_M_contig125235:2..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125235 3..239 -
1692277560.3765903-CDS-M-pyrifera_M_contig125235:2..2391692277560.3765903-CDS-M-pyrifera_M_contig125235:2..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125235 3..239 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815768.2609649-UTR-M-pyrifera_M_contig125235:239..2421622815768.2609649-UTR-M-pyrifera_M_contig125235:239..242Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125235 240..242 -
1692277560.3869054-UTR-M-pyrifera_M_contig125235:239..2421692277560.3869054-UTR-M-pyrifera_M_contig125235:239..242Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125235 240..242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125235.5104.1prot_M-pyrifera_M_contig125235.5104.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125235 3..239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125235.5104.1

>prot_M-pyrifera_M_contig125235.5104.1 ID=prot_M-pyrifera_M_contig125235.5104.1|Name=mRNA_M-pyrifera_M_contig125235.5104.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MGSNGVCPQWCPSGDKFPEPKPVGVNYPGATFKYTMTDGAGKRRVATASQ
LSQAAGGLQLPYCLFGLGRTSSYVDYLFY
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mRNA from alignment at M-pyrifera_M_contig125235:3..242-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125235.5104.1 ID=mRNA_M-pyrifera_M_contig125235.5104.1|Name=mRNA_M-pyrifera_M_contig125235.5104.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig125235:3..242- (Macrocystis pyrifera P11B4 male)
ACGATGGGCTCGAACGGAGTGTGTCCGCAGTGGTGTCCGTCGGGTGACAA GTTTCCTGAGCCAAAGCCGGTGGGCGTGAACTACCCCGGGGCGACCTTCA AGTACACAATGACTGACGGCGCAGGAAAGCGGAGGGTGGCGACGGCCAGC CAGCTATCCCAGGCTGCAGGGGGCCTGCAGCTTCCTTACTGCCTCTTTGG CCTGGGGAGGACTTCCTCTTACGTCGATTACCTCTTCTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125235:3..242-

>mRNA_M-pyrifera_M_contig125235.5104.1 ID=mRNA_M-pyrifera_M_contig125235.5104.1|Name=mRNA_M-pyrifera_M_contig125235.5104.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig125235:3..242- (Macrocystis pyrifera P11B4 male)
ATGGGCTCGAACGGAGTGTGTCCGCAGTGGTGTCCGTCGGGTGACAAGTT
TCCTGAGCCAAAGCCGGTGGGCGTGAACTACCCCGGGGCGACCTTCAAGT
ACACAATGACTGACGGCGCAGGAAAGCGGAGGGTGGCGACGGCCAGCCAG
CTATCCCAGGCTGCAGGGGGCCTGCAGCTTCCTTACTGCCTCTTTGGCCT
GGGGAGGACTTCCTCTTACGTCGATTACCTCTTCTATATGGGCTCGAACG
GAGTGTGTCCGCAGTGGTGTCCGTCGGGTGACAAGTTTCCTGAGCCAAAG
CCGGTGGGCGTGAACTACCCCGGGGCGACCTTCAAGTACACAATGACTGA
CGGCGCAGGAAAGCGGAGGGTGGCGACGGCCAGCCAGCTATCCCAGGCTG
CAGGGGGCCTGCAGCTTCCTTACTGCCTCTTTGGCCTGGGGAGGACTTCC
TCTTACGTCGATTACCTCTTCTAT
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