mRNA_M-pyrifera_M_contig12521.5098.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12521.5098.1
Unique NamemRNA_M-pyrifera_M_contig12521.5098.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 8.120e-25
Identity = 62/83 (74.70%), Postives = 62/83 (74.70%), Query Frame = 3 
Query:  276 MALNASPAMTQAPTQAQQGPG-----------NTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 491
            MALNA PAMTQAP Q                 N AIAPYHSASLYVGDLSKDVAEA LFEIFSQVGPVASIRVCRDTVTRRSL
Sbjct:    1 MALNAPPAMTQAPAQGXXXXXXXXXXXXXXXXNAAIAPYHSASLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSL 83
[Close]
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A6G0WN78_9STRA (Polyadenylate-binding protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0WN78_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.220e-16
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 3 
Query:  267 RKDMALNASPAMTQAPTQAQQGPGNTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 491
            +KDM+ NA+P    +P      P  +A  P+H+ASLYVGD+  DV EA+LFEIF+ VGPVASIRVCRD VTRRSL
Sbjct:   45 KKDMSSNAAPT---SPVANNTAPATSAT-PFHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSL 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: K3X8Z0_GLOUD (Polyadenylate-binding protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X8Z0_GLOUD)

HSP 1 Score: 84.7 bits (208), Expect = 4.330e-16
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 3 
Query:  285 NASPAMTQAPTQAQQGPGNTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 491
            + SP  + A T A    G  A  P+H+ASLYVGD+  DV EA+LFEIF+ VGPVASIRVCRD VTRRSL
Sbjct:    5 STSPTNSPATTAASSATGAAAAQPFHTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSL 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A7S2MJB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MJB4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.280e-16
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 3 
Query:  288 ASPAMTQAPTQAQQGPGNTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 491
            A+P++  A     +GPG TA  P+HSASLYVGDL+ DV E +LFE+F+ VGPV+SIRVCRD VTRRSL
Sbjct:   30 AAPSVPPAMASGGEGPGGTAQ-PFHSASLYVGDLALDVNEGLLFEVFNAVGPVSSIRVCRDAVTRRSL 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: E1ZQ58_CHLVA (Polyadenylate-binding protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQ58_CHLVA)

HSP 1 Score: 83.2 bits (204), Expect = 1.490e-15
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 3 
Query:  309 APTQAQQGPGNTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 491
            APT A  G G TA A  H++SLYVGDL +DV EA LFE+FSQ+GPVASIRVCRD VTRRSL
Sbjct:   20 APTAAAPGAG-TAAAATHNSSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSL 79
[Close]
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A7S2V0G2_9STRA (Polyadenylate-binding protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0G2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.770e-15
Identity = 39/46 (84.78%), Postives = 44/46 (95.65%), Query Frame = 3 
Query:  354 PYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 491
            P+HSASLYVGDL+ DV+EA+LFEIF+ VGPVASIRVCRDTVTRRSL
Sbjct:   11 PFHSASLYVGDLAPDVSEALLFEIFNAVGPVASIRVCRDTVTRRSL 56
[Close]
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.790e-15
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 3 
Query:  348 IAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 491
            + P+HSASLYVGDL+ D+ E+ LFEIF+QVGPVASIRVCRDT+TRRSL
Sbjct:   57 VTPFHSASLYVGDLAPDITESTLFEIFNQVGPVASIRVCRDTITRRSL 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A1Y1I3W0_KLENI (Polyadenylate-binding protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3W0_KLENI)

HSP 1 Score: 82.0 bits (201), Expect = 3.780e-15
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 3 
Query:  297 AMTQAPTQAQ---QGPGNTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 491
            A  QAP QAQ    GPG +  AP+ S SLYVGDL  +V+EA L+E+F+QVGPV SIRVCRD +TRRSL
Sbjct:    2 AQVQAPPQAQGAQAGPGGSGPAPFASTSLYVGDLEANVSEAQLYEVFNQVGPVVSIRVCRDLITRRSL 69
[Close]
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A448ZJB9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJB9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.820e-15
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:  291 SPAMTQAPTQAQQGPG-NTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 491
            +P    AP   Q GPG +   AP+HSASLYVGDL  D  E +LFEIF+ VGPVASIRVCRD VTRRSL
Sbjct:   16 APMTGAAPVPGQAGPGGDEGPAPFHSASLYVGDLVPDANEGLLFEIFNAVGPVASIRVCRDAVTRRSL 83
[Close]
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Match: A0A507FFP4_9FUNG (Polyadenylate-binding protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FFP4_9FUNG)

HSP 1 Score: 80.9 bits (198), Expect = 9.550e-15
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 3 
Query:  315 TQAQQGPGNTAIAPYHSASLYVGDLSKDVAEAILFEIFSQVGPVASIRVCRDTVTRRSL 491
            T+AQ  PG   IAP   +SLYVG+L   V EA+LFE+FS VGPVASIRVCRDT+TRRSL
Sbjct:   28 TEAQLPPGGVVIAPTPQSSLYVGELDPSVTEAMLFELFSMVGPVASIRVCRDTITRRSL 86
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12521.5098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD5_ECTSI8.120e-2574.70Polyadenylate-binding protein n=2 Tax=Ectocarpus T... [more]
A0A6G0WN78_9STRA3.220e-1660.00Polyadenylate-binding protein n=2 Tax=Aphanomyces ... [more]
K3X8Z0_GLOUD4.330e-1662.32Polyadenylate-binding protein n=2 Tax=Pythiaceae T... [more]
A0A7S2MJB4_9STRA8.280e-1663.24Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
E1ZQ58_CHLVA1.490e-1572.13Polyadenylate-binding protein n=1 Tax=Chlorella va... [more]
A0A7S2V0G2_9STRA2.770e-1584.78Polyadenylate-binding protein n=2 Tax=Fibrocapsa j... [more]
A0A835YVH9_9STRA2.790e-1577.08Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]
A0A1Y1I3W0_KLENI3.780e-1563.24Polyadenylate-binding protein n=1 Tax=Klebsormidiu... [more]
A0A448ZJB9_9STRA3.820e-1564.71Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A507FFP4_9FUNG9.550e-1567.80Polyadenylate-binding protein n=2 Tax=Chytriomyces... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12521contigM-pyrifera_M_contig12521:3967..6841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue7.2e-22
Seed eggNOG ortholog2880.D8LTD5
Preferred namePAB1
KEGG koko:K13126
KEGG Pathwayko03013,ko03015,ko03018,map03013,map03015,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003727,GO:0003729,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005840,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008428,GO:0009889,GO:0009894,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015031,GO:0015833,GO:0015931,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031326,GO:0031329,GO:0031503,GO:0032268,GO:0032991,GO:0033036,GO:0034248,GO:0034613,GO:0035770,GO:0036464,GO:0042886,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051641,GO:0051649,GO:0060211,GO:0060255,GO:0061013,GO:0065007,GO:0065009,GO:0070717,GO:0070727,GO:0071014,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0098772,GO:1900151,GO:1901363,GO:1903311,GO:1990841,GO:1990904,GO:2000112
EggNOG free text desc.RNA binding
EggNOG OGsKOG0123@1,KOG0123@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03041
Exons4
Model size493
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12521.5098.1prot_M-pyrifera_M_contig12521.5098.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12521 3967..6206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.8918517-CDS-M-pyrifera_M_contig12521:3966..40231622815767.8918517-CDS-M-pyrifera_M_contig12521:3966..4023Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12521 3967..4023 -
1692277560.1874876-CDS-M-pyrifera_M_contig12521:3966..40231692277560.1874876-CDS-M-pyrifera_M_contig12521:3966..4023Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12521 3967..4023 -
1622815767.903967-CDS-M-pyrifera_M_contig12521:5592..56791622815767.903967-CDS-M-pyrifera_M_contig12521:5592..5679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12521 5593..5679 -
1692277560.1983163-CDS-M-pyrifera_M_contig12521:5592..56791692277560.1983163-CDS-M-pyrifera_M_contig12521:5592..5679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12521 5593..5679 -
1622815767.9162028-CDS-M-pyrifera_M_contig12521:6134..62061622815767.9162028-CDS-M-pyrifera_M_contig12521:6134..6206Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12521 6135..6206 -
1692277560.2067027-CDS-M-pyrifera_M_contig12521:6134..62061692277560.2067027-CDS-M-pyrifera_M_contig12521:6134..6206Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12521 6135..6206 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.9328456-UTR-M-pyrifera_M_contig12521:6206..63081622815767.9328456-UTR-M-pyrifera_M_contig12521:6206..6308Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12521 6207..6308 -
1692277560.2155988-UTR-M-pyrifera_M_contig12521:6206..63081692277560.2155988-UTR-M-pyrifera_M_contig12521:6206..6308Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12521 6207..6308 -
1622815767.944096-UTR-M-pyrifera_M_contig12521:6668..68411622815767.944096-UTR-M-pyrifera_M_contig12521:6668..6841Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12521 6669..6841 -
1692277560.2251022-UTR-M-pyrifera_M_contig12521:6668..68411692277560.2251022-UTR-M-pyrifera_M_contig12521:6668..6841Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12521 6669..6841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12521.5098.1

>prot_M-pyrifera_M_contig12521.5098.1 ID=prot_M-pyrifera_M_contig12521.5098.1|Name=mRNA_M-pyrifera_M_contig12521.5098.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
MALNASPAMTQAPTQAQQGPGNTAIAPYHSASLYVGDLSKDVAEAILFEI
FSQVGPVASIRVCRDTVTRRSL
back to top

mRNA from alignment at M-pyrifera_M_contig12521:3967..6841-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12521.5098.1 ID=mRNA_M-pyrifera_M_contig12521.5098.1|Name=mRNA_M-pyrifera_M_contig12521.5098.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2875bp|location=Sequence derived from alignment at M-pyrifera_M_contig12521:3967..6841- (Macrocystis pyrifera P11B4 male)
CCTAAACCTTCGAGGAGAACAAGCGTTCCGAGGAGAGAGCTCCCCCCCCC
TCCAGGAGTTGGTTAGTTGACCACTCCATTAAACCTGGCTTGACCCTGAA
CTGGGCTGCCATCGATAAAAAACAAAAAAATTCCTTAAAACCACAAAAAA
AACTCCCCATCGGGTTTCGCCAGGTGAGAGTCTTGGCGTGCAAAACCTCG
TAGCGACGTGCGGCCGAACGAGCCGGCTTGTCGGCTTGCCGGTAGCCACA
ATGCAGCCGTTCTACTGACTACCTACCCGGGTGCCACTGTCGGCTCGGCT
CGACCCCGCGAGGCGACGCGATGGGAAAAAGTGCGAAGCGGCCGTTAGTA
TGTGAGGTGTGAGAGAGAACCACCCAGTTGGTAGTTTGTTGTTTATACAC
GCACGGCCCGTTTGCCTCTCGATCGCTCTCTTCCAAACACGCGACGCCTT
TCGCTGTCCGTCCGTCTTTCCTGGTCGTCCGTCCGTCTTTCCTGGTCGTG
TCTCCTGCATGCCTGTGTCTCGTGTATCCGCAGCCCATCCCAGAGCATCC
CCGTACACCGTTCCCCAGCCCTCCTCTTCTCGCCCACGCGGCACGGTGGT
AGACACGTCCCCAGTGCCTTGAAGGGAGAAAAGACATGGCTCTCAACGCC
TCTCCGGCGATGACCCAGGCCCCTACTCAGGCCCAGCAGGGTCCGGGCAA
CACTGCGGTGAGTAGTGGCTCTCTCAGACCTGGCGAGGGCCCAGCTCGGT
ACAGACCCGTAGTGGTCATCGTTGCTGAGTTATTCGACCGAGGAAACAGC
TGGTTGCTTGGAAGCGTTGTTGGTTTTAGCGACAGAATTGTGTTGCACCG
GCTCGGCTGCACCTGCCGGATTCTTGGGATTATCGAGTCTACCAGGGCGT
GCCTGCTTGCTGCGTGCTTGTGCACGAAAAGGTGCATGGTCCTCGTTCCG
TTCAGCATATTTTTGTGTGGATTTTTTGGCTGCGGTGGTGCGAGAGGCGA
AGGGTTGAACATATCGCACGGCACGTTTCTGCGTGGCTACGTCGATCCTA
TGTGGCGTGGATGATGGGCCCAGCTTGATCTTTCATGTCCTTCCCCGTGC
GGGATGGTGCCCGATGTTCTGCCTTGTCTGGTTTGTCGGCTTATTCGCTC
TGCTCGCAACAGATCGCCCCCTACCACTCGGCGTCTCTGTACGTGGGTGA
TCTCTCGAAGGATGTGGCGGAGGCTATTCTGTTCGAAATCTTCAGCCAGG
TAAGCCGTCAAAGGGAGCAGGGGAATAGGTGTTCTTGGTGTCGGCTTGAT
TGTTTCCTATGTGCCCGATGTACAGCAGTAGACGCCCGTGTGAGACCCGT
TCTTCCTGCACTCATTACCTCCCAGATACCGCCTACTACTGCTGCTGTAC
ATTCATACCAGTACTGACCTCGATTTACCAAACAAAGTACGTCGTAGTTG
AAAGTTCAATCAACGAGATCCGTCTGGTGCCAGTACGTCTTTTCATGAGG
GATGACTGCTGTACCGGTATCCAGTGTGCAACGCGATGCCAGGATATCTG
CTGTACGTGTTACATCGGTAGGATCGCCATTTTTCGTCGTCGTGCGTGTT
GCGAGCTATTGTTTGTGCTGCTGCCGCTGCTGCTGTACTATGGCCGAAAT
TATAAAGAGCGCTTGAGGATTCTTAGTAGTGTTGAAACGGTCTCTATATA
TCCGGCTAGAGTGGTATCCCACTCTGTCCGAAATTACTAGGATCGTTTGG
ATGTTGAAGAATATACAAGCGCTGCTTATAAATCCGGATTATTGTGGCAC
ATATGATAGAGCCAGAGGGCCTGGTTATACGATGGTTGATGACGTTTTTT
GTGCGGCCTTGAGCGTCTGTGCTCCCTCTGACACAACTGACCAGACACGG
GCGACTCCACTCTTCCGCTCGCCAGCTCTATGCAGAGTAATCACAGATGC
TGGCGTACTTGATGTACGTCTGTCATGGCTGTACCCTGGTGGGATCAGCG
AAAACAAAAACGGGGTGTATCACGATCGTGGAATTATGGGATGTATAACT
TTCATCATTCTGTTAGAATTACGTACCAAGATGCACTTTTATCATCTGCC
GCCTGCTGCTGCAGAGCTTTCGCGGTGAACGTCTCAAATGCAGTATCGAG
GCTTGCATCAGTAGTTTCAGCACAATAGTATAATAGTACCAGGTAGTCTG
TCTCTACATCAGATGTTCCCGAAATAGAAACCAGCCGCGCTAAACGCAGC
AGGGAAACCAATTATTAATATTTCAATAGTAATTTAGCTTGCAAAGTTGA
GCATCAACTATTTAATCCACAGCAGTCGAACTCACAGCTTCTGACGTATT
TCAAAACTTATAAAACAGTAATTTACACGTACTTATACCGGTATAATATA
ATACCTGGTACACGGCCAAGCACGCAACTTGATCTACACGCACCGCGTAG
CTACAAAATCTGTCGTTTTGTTGCCTGCACCGTCTAGAGACTACGTACCT
CTCGTGTTCATGGAGCCCATCCACACTCGCCAATTCCTGTAAATTCCTGG
AAAATGCGAAAGTCACCGGGTACTTGGGTGCTACCAATTCCCAGGTATCA
GCCAGGTCCTGGAGTAGGTACCACGAAGCACTGGTTCGTGTTGTACTATT
GCGTTCTCGTTGATGACTCGAATCTCTCAATCTTTGGTGATGGTATCATC
ACGCCGATGTTCGTGTTTGGTTACATATGAAGAAGCACTACTCGACTTCG
CTGCTTTGGTGGGCTTGCTCCTTACGATGCCGTGTACCGAATACTGCTGC
TGTGTGTGATGCATGCAGGTTGGCCCCGTGGCGTCCATCCGAGTGTGCCG
CGACACGGTGACCAGGCGCTCGCTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12521:3967..6841-

>mRNA_M-pyrifera_M_contig12521.5098.1 ID=mRNA_M-pyrifera_M_contig12521.5098.1|Name=mRNA_M-pyrifera_M_contig12521.5098.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig12521:3967..6841- (Macrocystis pyrifera P11B4 male)
ATGGCTCTCAACGCCTCTCCGGCGATGACCCAGGCCCCTACTCAGGCCCA
GCAGGGTCCGGGCAACACTGCGATGGCTCTCAACGCCTCTCCGGCGATGA
CCCAGGCCCCTACTCAGGCCCAGCAGGGTCCGGGCAACACTGCGATCGCC
CCCTACCACTCGGCGTCTCTGTACGTGGGTGATCTCTCGAAGGATGTGGC
GGAGGCTATTCTGTTCGAAATCTTCAGCCAGATCGCCCCCTACCACTCGG
CGTCTCTGTACGTGGGTGATCTCTCGAAGGATGTGGCGGAGGCTATTCTG
TTCGAAATCTTCAGCCAGGTTGGCCCCGTGGCGTCCATCCGAGTGTGCCG
CGACACGGTGACCAGGCGCTCGCTGGTTGGCCCCGTGGCGTCCATCCGAG
TGTGCCGCGACACGGTGACCAGGCGCTCGCTG
back to top