mRNA_M-pyrifera_M_contig12516.5094.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12516.5094.1
Unique NamemRNA_M-pyrifera_M_contig12516.5094.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12516.5094.1 vs. uniprot
Match: D8LN90_ECTSI (UTP--glucose-1-phosphate uridylyltransferase n=4 Tax=Phaeophyceae TaxID=2870 RepID=D8LN90_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 3.040e-33
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    1 GVAPVVALDAKKYKLVQQLDAAM-AVTPSLIGCDRLTVTGEVRLVGETVFKGTCSVVNKAGEGKALPPGEYVDASVDLTSAVG 246
            GVAPVV+LDAKKYKLVQQLDAAM A TPSLIGCDRLTV+G+V++ G+TVFKGTCSVVNK+GE K LP GEY DASVDL+ A G
Sbjct:  398 GVAPVVSLDAKKYKLVQQLDAAMTAGTPSLIGCDRLTVSGDVQMAGDTVFKGTCSVVNKSGESKVLPAGEYADASVDLSEAEG 480
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BLAST of mRNA_M-pyrifera_M_contig12516.5094.1 vs. uniprot
Match: A0A7S3LY68_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LY68_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 8.680e-21
Identity = 50/83 (60.24%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    1 GVAPVVALDAKKYKLVQQLDAA-MAVTPSLIGCDRLTVTGEVRLVGETVFKGTCSVVNKAGEGKALPPGEYVDASVDLTSAVG 246
            GVAPVV LD KKYKLVQ L+AA +   PSL+ C +LTVTGEV L    VFKGT  VVN + E K LPPG Y + +VDLT++ G
Sbjct:   93 GVAPVVDLDEKKYKLVQHLEAATLNGYPSLVACRKLTVTGEVILSSRNVFKGTVRVVNSSAEPKVLPPGVYENTTVDLTTSAG 175
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BLAST of mRNA_M-pyrifera_M_contig12516.5094.1 vs. uniprot
Match: W7T5H8_9STRA (UTP--glucose-1-phosphate uridylyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T5H8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.490e-19
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:    1 GVAPVVALDAKKYKLVQQLDAA-MAVTPSLIGCDRLTVTGEVRLVGETVFKGTCSVVNKAGEGKALPPGEYVDASVDLTSAVG 246
            G AP++ LD K YKLVQQL+AA    TPSL+G DRLT+ G+V L    VF+GT +V NK  E K LP G Y DASVDLT+A G
Sbjct:  394 GAAPLINLDDKAYKLVQQLEAATQGGTPSLVGADRLTIQGQVWLSSGVVFQGTTTVTNKGDEPKVLPKGVYKDASVDLTAAPG 476
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BLAST of mRNA_M-pyrifera_M_contig12516.5094.1 vs. uniprot
Match: A0A7S4NAP1_9STRA (UTP--glucose-1-phosphate uridylyltransferase (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NAP1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.330e-19
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    1 GVAPVVALDAKKYKLVQQLDAAMAV-TPSLIGCDRLTVTGEVRLVGETVFKGTCSVVNKAGEGKALPPGEYVDASVDLTSAVG 246
            GVAPVVA+D+KKYKLV++L+ A A   PSL+GC RLT+ G VR+   T F G  S+ N + E KA+P GE  DA++DLT AVG
Sbjct:  388 GVAPVVAIDSKKYKLVEKLEEATASGVPSLVGCKRLTIKGLVRMGKSTKFVGEVSITNSSDESKAVPTGEVKDATMDLTDAVG 470
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BLAST of mRNA_M-pyrifera_M_contig12516.5094.1 vs. uniprot
Match: A0A6V1U5R2_HETAK (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U5R2_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 7.650e-18
Identity = 47/83 (56.63%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 GVAPVVALDAKKYKLVQQLD-AAMAVTPSLIGCDRLTVTGEVRLVGETVFKGTCSVVNKAGEGKALPPGEYVDASVDLTSAVG 246
            GVAPV+ LD+KK+KLVQQL+ A M   PSLI CDRL V G V       F+G  S+ N +GE K LPPG Y D  VDLT A G
Sbjct:  352 GVAPVIDLDSKKFKLVQQLEEATMMGVPSLIKCDRLKVKGTVYFNSRVAFEGNVSIENNSGEPKMLPPGLYKDTKVDLTHAPG 434
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BLAST of mRNA_M-pyrifera_M_contig12516.5094.1 vs. uniprot
Match: A0A024GEE8_9STRA (UTP--glucose-1-phosphate uridylyltransferase n=3 Tax=Albugo TaxID=65356 RepID=A0A024GEE8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.630e-17
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    1 GVAPVVALDAKKYKLVQQLDAAM-AVTPSLIGCDRLTVTGEVRLVGETVFKGTCSVVNKAGEGKALPPGEYVDASVDLTSAVG 246
            GVAP+VALD+K +KLVQQL+AA+   TPSLI C RL VTG+V    + VF+G  +VVN + E K +  G Y D +VDLT   G
Sbjct:  393 GVAPIVALDSKTFKLVQQLEAALRGNTPSLIKCSRLKVTGDVCFAPDVVFEGEVTVVNNSSEPKTISSGTYKDTTVDLTEQKG 475
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BLAST of mRNA_M-pyrifera_M_contig12516.5094.1 vs. uniprot
Match: A0A2D4BR66_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BR66_PYTIN)

HSP 1 Score: 83.2 bits (204), Expect = 9.230e-17
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    1 GVAPVVALDAKKYKLVQQLDAAM-AVTPSLIGCDRLTVTGEVRLVGETVFKGTCSVVNKAGEGKALPPGEYVDASVDLTSAVG 246
            GVAP+V LD K +KLVQQL+AA+    PSL+ CDRL +TG+V      VF+G+ +VVN + E K + PG Y D ++DLT   G
Sbjct:  313 GVAPIVGLDGKTFKLVQQLEAALRGNVPSLVKCDRLKITGKVGFASGVVFEGSITVVNNSSEEKTVLPGVYKDTTIDLTEQKG 395
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BLAST of mRNA_M-pyrifera_M_contig12516.5094.1 vs. uniprot
Match: A0A2D4BRD6_PYTIN (UTP--glucose-1-phosphate uridylyltransferase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BRD6_PYTIN)

HSP 1 Score: 83.2 bits (204), Expect = 9.250e-17
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    1 GVAPVVALDAKKYKLVQQLDAAM-AVTPSLIGCDRLTVTGEVRLVGETVFKGTCSVVNKAGEGKALPPGEYVDASVDLTSAVG 246
            GVAP+V LD K +KLVQQL+AA+    PSL+ CDRL +TG+V      VF+G+ +VVN + E K + PG Y D ++DLT   G
Sbjct:  394 GVAPIVGLDGKTFKLVQQLEAALRGNVPSLVKCDRLKITGKVGFASGVVFEGSITVVNNSSEEKTVLPGVYKDTTIDLTDQKG 476
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BLAST of mRNA_M-pyrifera_M_contig12516.5094.1 vs. uniprot
Match: A0A2P4YJM6_9STRA (Phosphoglucomutase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJM6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.710e-16
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    1 GVAPVVALDAKKYKLVQQLDAAM-AVTPSLIGCDRLTVTGEVRLVGETVFKGTCSVVNKAGEGKALPPGEYVDASVDLTSAVG 246
            GVAP+V+LD+K +KLVQQL+AA+    PSLI CDRL +TG V      VF+G+  VVNK+ E K +  G Y D +VDLT   G
Sbjct:  148 GVAPIVSLDSKNFKLVQQLEAAVRGNVPSLIKCDRLKITGNVGFAPGVVFEGSVEVVNKSSEQKTVLAGTYKDTTVDLTEQKG 230
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BLAST of mRNA_M-pyrifera_M_contig12516.5094.1 vs. uniprot
Match: H3HD79_PHYRM (UTP--glucose-1-phosphate uridylyltransferase n=31 Tax=Peronosporaceae TaxID=4777 RepID=H3HD79_PHYRM)

HSP 1 Score: 82.4 bits (202), Expect = 1.720e-16
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    1 GVAPVVALDAKKYKLVQQLDAAM-AVTPSLIGCDRLTVTGEVRLVGETVFKGTCSVVNKAGEGKALPPGEYVDASVDLTSAVG 246
            GVAP+V+LD+K +KLVQQL+AA+    PSLI CDRL +TG V      VF+G+  VVNK+ E K +  G Y D +VDLT   G
Sbjct:  392 GVAPIVSLDSKNFKLVQQLEAAVRGNVPSLIKCDRLKITGNVGFAPGVVFEGSVEVVNKSSEQKTVLAGTYKDTTVDLTEQKG 474
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12516.5094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN90_ECTSI3.040e-3379.52UTP--glucose-1-phosphate uridylyltransferase n=4 T... [more]
A0A7S3LY68_9STRA8.680e-2160.24Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7T5H8_9STRA2.490e-1959.04UTP--glucose-1-phosphate uridylyltransferase n=2 T... [more]
A0A7S4NAP1_9STRA3.330e-1956.63UTP--glucose-1-phosphate uridylyltransferase (Frag... [more]
A0A6V1U5R2_HETAK7.650e-1856.63Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
A0A024GEE8_9STRA3.630e-1754.22UTP--glucose-1-phosphate uridylyltransferase n=3 T... [more]
A0A2D4BR66_PYTIN9.230e-1750.60Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2D4BRD6_PYTIN9.250e-1750.60UTP--glucose-1-phosphate uridylyltransferase n=2 T... [more]
A0A2P4YJM6_9STRA1.710e-1653.01Phosphoglucomutase (Fragment) n=1 Tax=Phytophthora... [more]
H3HD79_PHYRM1.720e-1653.01UTP--glucose-1-phosphate uridylyltransferase n=31 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12516contigM-pyrifera_M_contig12516:4696..5575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue4.6e-28
Seed eggNOG ortholog2880.D8LN90
Preferred namePGM2
KEGG rclassRC00002,RC00408
KEGG koko:K00963,ko:K01835
KEGG ReactionR00289,R00959,R01057,R08639
KEGG Pathwayko00010,ko00030,ko00040,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00040,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00129,M00361,M00362,M00549
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005982,GO:0005996,GO:0006006,GO:0006012,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009250,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009581,GO:0009582,GO:0009590,GO:0009605,GO:0009628,GO:0009629,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0015980,GO:0016020,GO:0016051,GO:0016052,GO:0016853,GO:0016866,GO:0016868,GO:0019252,GO:0019318,GO:0019320,GO:0019388,GO:0031967,GO:0031975,GO:0033692,GO:0034637,GO:0034645,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046365,GO:0046686,GO:0050896,GO:0051606,GO:0055114,GO:0071704,GO:0071944,GO:1901575,GO:1901576
EggNOG free text desc.Utp--glucose-1-phosphate uridylyltransferase
EggNOG OGsCOG0033@1,COG4284@1,KOG0625@2759,KOG2638@2759
EC2.7.7.9,5.4.2.2
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.518511-CDS-M-pyrifera_M_contig12516:4695..48451622815767.518511-CDS-M-pyrifera_M_contig12516:4695..4845Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12516 4696..4845 +
1692277559.9956818-CDS-M-pyrifera_M_contig12516:4695..48451692277559.9956818-CDS-M-pyrifera_M_contig12516:4695..4845Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12516 4696..4845 +
1622815767.5331342-CDS-M-pyrifera_M_contig12516:5473..55751622815767.5331342-CDS-M-pyrifera_M_contig12516:5473..5575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12516 5474..5575 +
1692277560.0101945-CDS-M-pyrifera_M_contig12516:5473..55751692277560.0101945-CDS-M-pyrifera_M_contig12516:5473..5575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12516 5474..5575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12516.5094.1prot_M-pyrifera_M_contig12516.5094.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12516 4696..5575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12516.5094.1

>prot_M-pyrifera_M_contig12516.5094.1 ID=prot_M-pyrifera_M_contig12516.5094.1|Name=mRNA_M-pyrifera_M_contig12516.5094.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
GVAPVVALDAKKYKLVQQLDAAMAVTPSLIGCDRLTVTGEVRLVGETVFK
GTCSVVNKAGEGKALPPGEYVDASVDLTSAVGA*
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mRNA from alignment at M-pyrifera_M_contig12516:4696..5575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12516.5094.1 ID=mRNA_M-pyrifera_M_contig12516.5094.1|Name=mRNA_M-pyrifera_M_contig12516.5094.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=880bp|location=Sequence derived from alignment at M-pyrifera_M_contig12516:4696..5575+ (Macrocystis pyrifera P11B4 male)
GGGGTCGCCCCCGTGGTCGCTCTCGACGCGAAGAAGTACAAGCTGGTGCA
GCAGCTCGACGCCGCCATGGCCGTCACCCCCAGCCTCATCGGCTGCGACC
GCCTCACTGTCACCGGAGAGGTCCGCCTCGTCGGCGAGACCGTGTTCAAG
GTGAGATATGGAGGCCGAGGAAGAGAGGGGCGAGGGAAGGAGGGGGTGGG
GGTCGAGGTGGGGGGGGTTGTAGAAAAGACGGGAGGGGGGTGTACACATG
TCGTGCGTGGCCGTAGTCGTATGCCCACAGACCCTCGCATCTGTGCAATG
CCGGGTCCGAGCACGTCTGGTTTTTACCGACCGGGCAGGCATTGAGGGGG
GGGGGTAGGGGATGAGATTGGTTCCTTTTTTTTCTCGGTTGTCGTGTATA
GATACTTTCTACCTTCCGCTTTTGTTGGTTTGAGATGTCGTGATTGTTTT
TGTGTGGTGACTTTACGATAACCGTACAGTCTTGCCACACGCAGGAGCAA
GGAGCAGTCTTTTGTTGTCGTGCTGTGCTTCGGAGTGGATATGTGTGTGT
TTTGTTTTTATATGCCGTGCATTTCCTATGCGCACTTTTGTTATCCTTGG
CTGATGGCGCCTGCTTTCCTCCGCGACTCGTTTTTGTTTTTATGTTGGTG
CTCGCAGGGAACGGGCAGCGTGGCGTTTTTTTTTCTTGAGTGTTTTTTTC
GCCTGTGGTCTGGTGCGCTCATTGCATGTCTTCCTCTCCGCCGTTTTGTT
TTGCTTGTCTGCACGTGCTTTTTCGCAGGGGACTTGCAGCGTGGTGAACA
AGGCCGGGGAGGGCAAGGCGCTGCCCCCTGGGGAGTACGTGGACGCCTCT
GTGGACCTCACCTCGGCTGTGGGTGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12516:4696..5575+

>mRNA_M-pyrifera_M_contig12516.5094.1 ID=mRNA_M-pyrifera_M_contig12516.5094.1|Name=mRNA_M-pyrifera_M_contig12516.5094.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig12516:4696..5575+ (Macrocystis pyrifera P11B4 male)
GGGGTCGCCCCCGTGGTCGCTCTCGACGCGAAGAAGTACAAGCTGGTGCA
GCAGCTCGACGCCGCCATGGCCGTCACCCCCAGCCTCATCGGCTGCGACC
GCCTCACTGTCACCGGAGAGGTCCGCCTCGTCGGCGAGACCGTGTTCAAG
GGGGTCGCCCCCGTGGTCGCTCTCGACGCGAAGAAGTACAAGCTGGTGCA
GCAGCTCGACGCCGCCATGGCCGTCACCCCCAGCCTCATCGGCTGCGACC
GCCTCACTGTCACCGGAGAGGTCCGCCTCGTCGGCGAGACCGTGTTCAAG
GGGACTTGCAGCGTGGTGAACAAGGCCGGGGAGGGCAAGGCGCTGCCCCC
TGGGGAGTACGTGGACGCCTCTGTGGACCTCACCTCGGCTGTGGGTGCGT
GAGGGACTTGCAGCGTGGTGAACAAGGCCGGGGAGGGCAAGGCGCTGCCC
CCTGGGGAGTACGTGGACGCCTCTGTGGACCTCACCTCGGCTGTGGGTGC
GTGA
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