mRNA_M-pyrifera_M_contig125119.5092.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125119.5092.1
Unique NamemRNA_M-pyrifera_M_contig125119.5092.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125119.5092.1 vs. uniprot
Match: A0A518A845_9PLAN (Putative oxidoreductase n=5 Tax=Gimesia TaxID=1649453 RepID=A0A518A845_9PLAN)

HSP 1 Score: 161 bits (408), Expect = 7.580e-46
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 1
Query:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVALFDRGTHPRFAIGESSTPAAGYLLQSLAAQYDLPQFEPFCKYGTWQQAH 237
            MQQFDVVILGAGFGGSLTALLLDRIGLSVAL DRGTHPRFAIGESSTPAAGYLLQSL+AQYDLPQFEPFCKYGTWQQAH
Sbjct:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVALVDRGTHPRFAIGESSTPAAGYLLQSLSAQYDLPQFEPFCKYGTWQQAH 79          
BLAST of mRNA_M-pyrifera_M_contig125119.5092.1 vs. uniprot
Match: A0A6I6APG1_9PLAN (FAD-dependent oxidoreductase n=4 Tax=Gimesia TaxID=1649453 RepID=A0A6I6APG1_9PLAN)

HSP 1 Score: 157 bits (396), Expect = 4.320e-44
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 1
Query:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVALFDRGTHPRFAIGESSTPAAGYLLQSLAAQYDLPQFEPFCKYGTWQQAH 237
            MQQFDVVILGAGFGGSLTALLLDRIGLSVAL DRGTHPRFAIGESSTPAAGYLLQSLAAQYDLPQFE FCKYG+WQQ+H
Sbjct:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVALVDRGTHPRFAIGESSTPAAGYLLQSLAAQYDLPQFEAFCKYGSWQQSH 79          
BLAST of mRNA_M-pyrifera_M_contig125119.5092.1 vs. uniprot
Match: A0A518IE13_9PLAN (Tryptophan halogenase n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IE13_9PLAN)

HSP 1 Score: 152 bits (383), Expect = 3.570e-42
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 1
Query:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVALFDRGTHPRFAIGESSTPAAGYLLQSLAAQYDLPQFEPFCKYGTWQQAH 237
            MQQFDVVILGAGFGGSLTALLLDRIGLSVAL DRGTHPRFAIGESSTPAAGYLL+SL+ QYDLPQF+PFCKYGTWQ+ +
Sbjct:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVALIDRGTHPRFAIGESSTPAAGYLLRSLSEQYDLPQFQPFCKYGTWQERY 79          
BLAST of mRNA_M-pyrifera_M_contig125119.5092.1 vs. uniprot
Match: A0A517VFP9_9PLAN (Putative oxidoreductase n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VFP9_9PLAN)

HSP 1 Score: 149 bits (377), Expect = 2.660e-41
Identity = 69/79 (87.34%), Postives = 76/79 (96.20%), Query Frame = 1
Query:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVALFDRGTHPRFAIGESSTPAAGYLLQSLAAQYDLPQFEPFCKYGTWQQAH 237
            MQQFDVVILGAGFGGSLTALLLDRIGLSVA+ DRGTHPRF+IGESSTPAAGYLLQSL+ +YDLPQF+PFCKYG+WQQ +
Sbjct:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVAVIDRGTHPRFSIGESSTPAAGYLLQSLSQKYDLPQFQPFCKYGSWQQTY 79          
BLAST of mRNA_M-pyrifera_M_contig125119.5092.1 vs. uniprot
Match: A0A3D3R920_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A3D3R920_9PLAN)

HSP 1 Score: 149 bits (375), Expect = 5.200e-41
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVALFDRGTHPRFAIGESSTPAAGYLLQSLAAQYDLPQFEPFCKYGTWQQA 234
            MQ FDVVILGAGFGGSLTALLLDRIGLSVAL DRG HPRF+IGESSTPAAGYLLQSL+ +YDLPQF+PFCKYGTWQQA
Sbjct:    1 MQHFDVVILGAGFGGSLTALLLDRIGLSVALIDRGKHPRFSIGESSTPAAGYLLQSLSQKYDLPQFQPFCKYGTWQQA 78          
BLAST of mRNA_M-pyrifera_M_contig125119.5092.1 vs. uniprot
Match: A0A2E2C300_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C300_9PLAN)

HSP 1 Score: 148 bits (373), Expect = 1.020e-40
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVALFDRGTHPRFAIGESSTPAAGYLLQSLAAQYDLPQFEPFCKYGTWQQA 234
            MQQFDVVILGAGFGGSLTALLLDRIGLSVAL DRG HPRF+IGESSTPAA YLLQSL+ +YDLPQF+PFCKYGTWQQA
Sbjct:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVALIDRGRHPRFSIGESSTPAASYLLQSLSHKYDLPQFQPFCKYGTWQQA 78          
BLAST of mRNA_M-pyrifera_M_contig125119.5092.1 vs. uniprot
Match: A0A517RH51_9PLAN (Tryptophan halogenase n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RH51_9PLAN)

HSP 1 Score: 147 bits (371), Expect = 1.900e-40
Identity = 67/77 (87.01%), Postives = 75/77 (97.40%), Query Frame = 1
Query:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVALFDRGTHPRFAIGESSTPAAGYLLQSLAAQYDLPQFEPFCKYGTWQQ 231
            MQQFDVVI+GAGFGGSLTALLLDR+GLSVA+ DRGTHPRFAIGESSTPAAGYLL+SL+ QYDLPQF+PFCK+GTWQ+
Sbjct:    1 MQQFDVVIMGAGFGGSLTALLLDRVGLSVAIVDRGTHPRFAIGESSTPAAGYLLRSLSEQYDLPQFQPFCKHGTWQE 77          
BLAST of mRNA_M-pyrifera_M_contig125119.5092.1 vs. uniprot
Match: A0A517WZU1_9PLAN (Tryptophan halogenase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WZU1_9PLAN)

HSP 1 Score: 140 bits (352), Expect = 1.190e-37
Identity = 64/79 (81.01%), Postives = 73/79 (92.41%), Query Frame = 1
Query:    1 MQQFDVVILGAGFGGSLTALLLDRIGLSVALFDRGTHPRFAIGESSTPAAGYLLQSLAAQYDLPQFEPFCKYGTWQQAH 237
            MQQFDVVILGAGFGGSLTALLL++IGL+VAL DRGTHPRF+IGESSTP A YLL+SL+  YDLPQF+PFCKYGTWQ+ +
Sbjct:    1 MQQFDVVILGAGFGGSLTALLLNQIGLNVALIDRGTHPRFSIGESSTPIADYLLESLSENYDLPQFQPFCKYGTWQERY 79          
BLAST of mRNA_M-pyrifera_M_contig125119.5092.1 vs. uniprot
Match: A0A522SM78_9BACT (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A522SM78_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 1.320e-25
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 QQFDVVILGAGFGGSLTALLLDRIGLSVALFDRGTHPRFAIGESSTPAAGYLLQSLAAQYDLPQFEPFCKYGTWQQAH 237
             ++D+VI G+GF GSLTAL+L  +G  + L ++  HPRFAIGESSTP A  +L+ L+A+Y LP   PF +YG+WQQ+H
Sbjct:    6 NRYDIVIAGSGFAGSLTALILRELGFKICLLEKSRHPRFAIGESSTPIADMILRDLSAKYHLPWLYPFSRYGSWQQSH 83          
BLAST of mRNA_M-pyrifera_M_contig125119.5092.1 vs. uniprot
Match: A0A382FNN7_9ZZZZ (DAO domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382FNN7_9ZZZZ)

HSP 1 Score: 100 bits (249), Expect = 1.440e-25
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 QQFDVVILGAGFGGSLTALLLDRIGLSVALFDRGTHPRFAIGESSTPAAGYLLQSLAAQYDLPQFEPFCKYGTWQQAH 237
             + D+ ++G GFGG+L A++  R+G SV L +RGTHPRFAIGESSTP A  LLQ LA ++DLPQ  PF ++G WQ+ H
Sbjct:    3 HKADIAVVGGGFGGALMAMVARRLGRSVVLIERGTHPRFAIGESSTPLANLLLQQLAEEHDLPQLLPFRRWGEWQREH 80          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125119.5092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518A845_9PLAN7.580e-4697.47Putative oxidoreductase n=5 Tax=Gimesia TaxID=1649... [more]
A0A6I6APG1_9PLAN4.320e-4494.94FAD-dependent oxidoreductase n=4 Tax=Gimesia TaxID... [more]
A0A518IE13_9PLAN3.570e-4289.87Tryptophan halogenase n=1 Tax=Gimesia fumaroli Tax... [more]
A0A517VFP9_9PLAN2.660e-4187.34Putative oxidoreductase n=1 Tax=Gimesia algae TaxI... [more]
A0A3D3R920_9PLAN5.200e-4189.74Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A2E2C300_9PLAN1.020e-4089.74Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A517RH51_9PLAN1.900e-4087.01Tryptophan halogenase n=1 Tax=Gimesia alba TaxID=2... [more]
A0A517WZU1_9PLAN1.190e-3781.01Tryptophan halogenase n=2 Tax=Gimesia aquarii TaxI... [more]
A0A522SM78_9BACT1.320e-2553.85FAD-dependent oxidoreductase (Fragment) n=1 Tax=Ch... [more]
A0A382FNN7_9ZZZZ1.440e-2556.41DAO domain-containing protein (Fragment) n=1 Tax=m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125119contigM-pyrifera_M_contig125119:1..237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score150.2
Seed ortholog evalue4e-34
Seed eggNOG ortholog344747.PM8797T_27025
Preferred nameprnC
KEGG rclassRC00949
KEGG koko:K14257
KEGG ReactionR05456,R11106,R11478
KEGG Pathwayko00253,ko00404,ko01057,ko01130,map00253,map00404,map01057,map01130
KEGG ModuleM00790,M00823
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Tryptophan halogenase
EggNOG OGs2IWUE@203682,COG0644@1,COG0644@2
EC1.14.19.49
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size237
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.3815424-CDS-M-pyrifera_M_contig125119:0..2371622815767.3815424-CDS-M-pyrifera_M_contig125119:0..237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125119 1..237 -
1692277559.9323473-CDS-M-pyrifera_M_contig125119:0..2371692277559.9323473-CDS-M-pyrifera_M_contig125119:0..237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125119 1..237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125119.5092.1prot_M-pyrifera_M_contig125119.5092.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125119 1..237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125119.5092.1

>prot_M-pyrifera_M_contig125119.5092.1 ID=prot_M-pyrifera_M_contig125119.5092.1|Name=mRNA_M-pyrifera_M_contig125119.5092.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MQQFDVVILGAGFGGSLTALLLDRIGLSVALFDRGTHPRFAIGESSTPAA
GYLLQSLAAQYDLPQFEPFCKYGTWQQAH
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mRNA from alignment at M-pyrifera_M_contig125119:1..237-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125119.5092.1 ID=mRNA_M-pyrifera_M_contig125119.5092.1|Name=mRNA_M-pyrifera_M_contig125119.5092.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig125119:1..237- (Macrocystis pyrifera P11B4 male)
ATGCAGCAATTTGATGTGGTGATCCTGGGAGCCGGTTTCGGCGGCAGTCT GACGGCCCTGTTGCTCGATCGCATTGGCCTCTCCGTCGCCCTGTTCGACC GCGGCACCCATCCCCGTTTCGCGATTGGGGAATCCTCCACGCCCGCCGCC GGCTATCTGCTCCAGTCACTGGCTGCACAGTACGATCTTCCACAATTTGA GCCATTTTGCAAGTATGGGACCTGGCAGCAGGCCCAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125119:1..237-

>mRNA_M-pyrifera_M_contig125119.5092.1 ID=mRNA_M-pyrifera_M_contig125119.5092.1|Name=mRNA_M-pyrifera_M_contig125119.5092.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig125119:1..237- (Macrocystis pyrifera P11B4 male)
ATGCAGCAATTTGATGTGGTGATCCTGGGAGCCGGTTTCGGCGGCAGTCT
GACGGCCCTGTTGCTCGATCGCATTGGCCTCTCCGTCGCCCTGTTCGACC
GCGGCACCCATCCCCGTTTCGCGATTGGGGAATCCTCCACGCCCGCCGCC
GGCTATCTGCTCCAGTCACTGGCTGCACAGTACGATCTTCCACAATTTGA
GCCATTTTGCAAGTATGGGACCTGGCAGCAGGCCCATATGCAGCAATTTG
ATGTGGTGATCCTGGGAGCCGGTTTCGGCGGCAGTCTGACGGCCCTGTTG
CTCGATCGCATTGGCCTCTCCGTCGCCCTGTTCGACCGCGGCACCCATCC
CCGTTTCGCGATTGGGGAATCCTCCACGCCCGCCGCCGGCTATCTGCTCC
AGTCACTGGCTGCACAGTACGATCTTCCACAATTTGAGCCATTTTGCAAG
TATGGGACCTGGCAGCAGGCCCAT
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