mRNA_M-pyrifera_M_contig125108.5091.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125108.5091.1
Unique NamemRNA_M-pyrifera_M_contig125108.5091.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125108.5091.1 vs. uniprot
Match: A0A2E7KMR6_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KMR6_9PLAN)

HSP 1 Score: 161 bits (408), Expect = 2.520e-46
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1
Query:    1 YRCSHYPLTVPRSQLLRLNRWMQQPVASPKANGSPAMVSDSQASREIESSIELAAIAPEDWPEENTMQAEPDSKRPPFRIVG 246
            YRCSHYPLTVPRSQLLRLNRWMQQPVASPKANGSPAMVSDSQASREIESSIELAAIAPEDWPEEN MQAEPDS+RPPFRIVG
Sbjct:  340 YRCSHYPLTVPRSQLLRLNRWMQQPVASPKANGSPAMVSDSQASREIESSIELAAIAPEDWPEENIMQAEPDSERPPFRIVG 421          
BLAST of mRNA_M-pyrifera_M_contig125108.5091.1 vs. uniprot
Match: A0A518A4K8_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A4K8_9PLAN)

HSP 1 Score: 96.3 bits (238), Expect = 1.230e-21
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 YRCSHYPLTVPRSQLLRLNRWMQQPVASPKANGSPAMVSDSQASREIESSIELAAIAPEDWPEENTMQAEPDSKRPPFRIVG 246
            YRCSH+PLT PR+QLLRLNRW+Q+P   PK + +  +   ++ +RE +SSIELAA+AP+DWP E  +     S+RPPFRIVG
Sbjct:  340 YRCSHFPLTAPRTQLLRLNRWLQKPAPRPKVSQTETVPPVTE-TRETQSSIELAAVAPDDWPVEKPVPTHTSSERPPFRIVG 420          
BLAST of mRNA_M-pyrifera_M_contig125108.5091.1 vs. uniprot
Match: A6CGW8_9PLAN (Uncharacterized protein n=8 Tax=Planctomycetaceae TaxID=126 RepID=A6CGW8_9PLAN)

HSP 1 Score: 70.5 bits (171), Expect = 2.450e-12
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 YRCSHYPLTVPRSQLLRLNRWMQQPVASP---KANGSPAMVSDSQASR-----EIESSIELAAIAPEDWPEENTMQAEPDSKRPPFRIVG 246
            YRCSH+P+T PRSQLLR+NRW+Q+P   P   K + + + ++ S A +     + +S IE+A  AP+DW  ++ +++     RP FRIVG
Sbjct:  354 YRCSHFPITAPRSQLLRMNRWIQKPALQPMGKKKSKADSGINVSSAPKLTPPEKPDSCIEIADDAPQDWSGQHKVRSGSTEDRPRFRIVG 443          
BLAST of mRNA_M-pyrifera_M_contig125108.5091.1 vs. uniprot
Match: A0A517V9Z3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V9Z3_9PLAN)

HSP 1 Score: 69.3 bits (168), Expect = 6.200e-12
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 YRCSHYPLTVPRSQLLRLNRWMQQPVASP---KANGSPAMVSDSQA-----SREIESSIELAAIAPEDWPEENTMQAEPDSKRPPFRIVG 246
            YRCSH+P+  PRSQLLR+NRW+Q+PV+ P   K + + + + +  A     S +  S IE+   AP+DW  +  ++ +    RP FRIVG
Sbjct:  340 YRCSHFPILAPRSQLLRMNRWIQKPVSKPSVKKISKTDSTIVNQPAGFLSQSMKPASCIEIIDAAPQDWSGQQEVRGDSSDDRPRFRIVG 429          
BLAST of mRNA_M-pyrifera_M_contig125108.5091.1 vs. uniprot
Match: A0A2E2C9V3_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C9V3_9PLAN)

HSP 1 Score: 67.8 bits (164), Expect = 2.170e-11
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    1 YRCSHYPLTVPRSQLLRLNRWMQQPVASPKAN-----GSP---AMVSDSQASREIESSIELAAIAPEDWPEENTMQAEPDSKRPPFRIVG 246
            YRCSH+PL  PRSQLLR+NRW+Q PV+ P A      GS    + V  S  + + ES IE+A   P+DW   +  +      +P FRIVG
Sbjct:  340 YRCSHFPLLAPRSQLLRVNRWIQTPVSIPTAKKISKPGSQIGNSPVPQSATAMKPESCIEIAEDEPQDWAGTDDSRGVSSEDQPRFRIVG 429          
BLAST of mRNA_M-pyrifera_M_contig125108.5091.1 vs. uniprot
Match: A0A517VZF9_9PLAN (Acetyltransf_6 domain-containing protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VZF9_9PLAN)

HSP 1 Score: 67.4 bits (163), Expect = 2.950e-11
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 YRCSHYPLTVPRSQLLRLNRWMQQPVASPKANGS-----PAMVSDSQASREIESSIELAAIAPEDWPEENTMQAEPDSKRPPFRIVG 246
            YRCSH+P+ VPRSQL R+NRW+ QP    K++ +     PA+   ++  ++   +IE+ + AP+DW  EN   ++    RP FRIVG
Sbjct:  340 YRCSHFPIMVPRSQLFRINRWISQPAQKQKSSQATTTRKPALNVKNETDQDA--TIEITSDAPQDWLSENNKHSK--GNRPGFRIVG 422          
BLAST of mRNA_M-pyrifera_M_contig125108.5091.1 vs. uniprot
Match: A0A518IAP8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IAP8_9PLAN)

HSP 1 Score: 65.9 bits (159), Expect = 1.040e-10
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 YRCSHYPLTVPRSQLLRLNRWMQQPVASPK-----ANGSPAMVSDSQASREIESSIELAAIAPEDWPEENTMQAEPDSKRPPFRIVG 246
            YRCSH+P+  PRSQ+LRLNRW+QQP   P      A+  P +      + + ++SIE+ A AP +W      Q   D +R  FR+VG
Sbjct:  340 YRCSHFPIAAPRSQVLRLNRWIQQPPLKPSRTELVASAKPELKLSQ--TPDSDTSIEITAEAPAEWDNHQKPQTNDDQRR--FRVVG 422          
BLAST of mRNA_M-pyrifera_M_contig125108.5091.1 vs. uniprot
Match: A0A517RDS4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RDS4_9PLAN)

HSP 1 Score: 64.7 bits (156), Expect = 2.650e-10
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 YRCSHYPLTVPRSQLLRLNRWMQQPVASPKANGSPAMVSDS---QASREIESSIELAAIAPEDWPEENTMQAEPDSKRPPFRIVG 246
            YRCSH+P+T PRSQ+LRLNRW+QQP   P      A          + + +SSIE+ A AP +W  +     +   +R  FR+VG
Sbjct:  340 YRCSHFPVTAPRSQVLRLNRWIQQPALKPSRTELVATTKPELKLSQTPDTDSSIEITAEAPPEWHSKQASSNDDVQRR--FRVVG 422          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125108.5091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2E7KMR6_9PLAN2.520e-4697.56Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518A4K8_9PLAN1.230e-2156.10Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A6CGW8_9PLAN2.450e-1242.22Uncharacterized protein n=8 Tax=Planctomycetaceae ... [more]
A0A517V9Z3_9PLAN6.200e-1241.11Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A2E2C9V3_9PLAN2.170e-1144.44Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A517VZF9_9PLAN2.950e-1141.38Acetyltransf_6 domain-containing protein n=2 Tax=G... [more]
A0A518IAP8_9PLAN1.040e-1041.38Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A517RDS4_9PLAN2.650e-1041.18Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125108contigM-pyrifera_M_contig125108:3..251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.0
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog344747.PM8797T_01784
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Protein involved in cellulose biosynthesis
EggNOG OGs2J2M6@203682,COG5653@1,COG5653@2
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.3477132-CDS-M-pyrifera_M_contig125108:2..2511622815767.3477132-CDS-M-pyrifera_M_contig125108:2..251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125108 3..251 +
1692277559.9101415-CDS-M-pyrifera_M_contig125108:2..2511692277559.9101415-CDS-M-pyrifera_M_contig125108:2..251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125108 3..251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125108.5091.1prot_M-pyrifera_M_contig125108.5091.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125108 3..251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125108.5091.1

>prot_M-pyrifera_M_contig125108.5091.1 ID=prot_M-pyrifera_M_contig125108.5091.1|Name=mRNA_M-pyrifera_M_contig125108.5091.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
YRCSHYPLTVPRSQLLRLNRWMQQPVASPKANGSPAMVSDSQASREIESS
IELAAIAPEDWPEENTMQAEPDSKRPPFRIVG*
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mRNA from alignment at M-pyrifera_M_contig125108:3..251+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125108.5091.1 ID=mRNA_M-pyrifera_M_contig125108.5091.1|Name=mRNA_M-pyrifera_M_contig125108.5091.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig125108:3..251+ (Macrocystis pyrifera P11B4 male)
TACCGCTGCTCACATTATCCGCTGACAGTTCCACGGTCACAGTTATTGAG GCTGAACCGCTGGATGCAACAGCCTGTAGCCAGCCCCAAAGCCAATGGCA GTCCAGCAATGGTCAGTGACAGTCAGGCCTCTCGGGAAATCGAGTCGAGT ATCGAACTGGCTGCAATTGCGCCGGAGGACTGGCCCGAAGAGAACACTAT GCAAGCGGAGCCTGATTCCAAGCGTCCTCCCTTTCGCATTGTCGGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125108:3..251+

>mRNA_M-pyrifera_M_contig125108.5091.1 ID=mRNA_M-pyrifera_M_contig125108.5091.1|Name=mRNA_M-pyrifera_M_contig125108.5091.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig125108:3..251+ (Macrocystis pyrifera P11B4 male)
TACCGCTGCTCACATTATCCGCTGACAGTTCCACGGTCACAGTTATTGAG
GCTGAACCGCTGGATGCAACAGCCTGTAGCCAGCCCCAAAGCCAATGGCA
GTCCAGCAATGGTCAGTGACAGTCAGGCCTCTCGGGAAATCGAGTCGAGT
ATCGAACTGGCTGCAATTGCGCCGGAGGACTGGCCCGAAGAGAACACTAT
GCAAGCGGAGCCTGATTCCAAGCGTCCTCCCTTTCGCATTGTCGGCTGAT
ACCGCTGCTCACATTATCCGCTGACAGTTCCACGGTCACAGTTATTGAGG
CTGAACCGCTGGATGCAACAGCCTGTAGCCAGCCCCAAAGCCAATGGCAG
TCCAGCAATGGTCAGTGACAGTCAGGCCTCTCGGGAAATCGAGTCGAGTA
TCGAACTGGCTGCAATTGCGCCGGAGGACTGGCCCGAAGAGAACACTATG
CAAGCGGAGCCTGATTCCAAGCGTCCTCCCTTTCGCATTGTCGGCTGA
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