mRNA_M-pyrifera_M_contig125103.5089.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125103.5089.1
Unique NamemRNA_M-pyrifera_M_contig125103.5089.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125103.5089.1 vs. uniprot
Match: A0A0A9WJT9_LYGHE (Rho GTPase-activating protein 27 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WJT9_LYGHE)

HSP 1 Score: 58.9 bits (141), Expect = 2.650e-7
Identity = 55/187 (29.41%), Postives = 77/187 (41.18%), Query Frame = 1 
Query:    1 AASDWREIRKEGQ-RTFYYNKKTKERRWDRPKEMDAKEDVGGGDVGGVSGVSSAAGAESEWEVKQDPKSGRRFYRNKRTGAKQWDAPREL-----------AQSGTVG-------------------GAAPASGGAGSAAGAKEEESEWKEMVDKRSGRVFYFNRRTQVKQWKKPKELEDKGGGESG 468
            A SDW  +  +   RT+YYNK TK  +W +P+    +         G +           W   +DPKSGR +Y NK T +  W  P  L           AQ GT G                    +AP S    +  G K     W E  D R+ R +++NR T+   WK+P EL+D  G ++G
Sbjct:    8 AMSDWTSVLDQTSGRTYYYNKVTKVTQWTKPEGYVERSSNSPVAASGANPEDDTENNPMYWNTVKDPKSGRTYYYNKVTKSTSWKMPDCLSSSSVPPQPLAAQQGTAGYPTAPLGLPQNVAVDGTSSPSAPISPIHSNTGGDK-----WAEATDPRTNRKYWYNRITRETTWKRPAELDDTSGSDTG 189
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125103.5089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0A9WJT9_LYGHE2.650e-729.41Rho GTPase-activating protein 27 (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125103contigM-pyrifera_M_contig125103:26..493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue6.3e-07
Seed eggNOG ortholog5664.LmjF.16.1140
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
EggNOG free text desc.Domain with 2 conserved Trp (W) residues
EggNOG OGs3XSVW@5653,COG5021@1,KOG0940@2759
COG Functional cat.O
Best tax levelKinetoplastida
Best eggNOG OGNA|NA|NA
Exons1
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.2838194-CDS-M-pyrifera_M_contig125103:25..4931622815767.2838194-CDS-M-pyrifera_M_contig125103:25..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125103 26..493 -
1692277559.886637-CDS-M-pyrifera_M_contig125103:25..4931692277559.886637-CDS-M-pyrifera_M_contig125103:25..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125103 26..493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125103.5089.1prot_M-pyrifera_M_contig125103.5089.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125103 26..493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125103.5089.1

>prot_M-pyrifera_M_contig125103.5089.1 ID=prot_M-pyrifera_M_contig125103.5089.1|Name=mRNA_M-pyrifera_M_contig125103.5089.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
AASDWREIRKEGQRTFYYNKKTKERRWDRPKEMDAKEDVGGGDVGGVSGV
SSAAGAESEWEVKQDPKSGRRFYRNKRTGAKQWDAPRELAQSGTVGGAAP
ASGGAGSAAGAKEEESEWKEMVDKRSGRVFYFNRRTQVKQWKKPKELEDK
GGGESG
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mRNA from alignment at M-pyrifera_M_contig125103:26..493-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125103.5089.1 ID=mRNA_M-pyrifera_M_contig125103.5089.1|Name=mRNA_M-pyrifera_M_contig125103.5089.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig125103:26..493- (Macrocystis pyrifera P11B4 male)
GCCGCGTCAGACTGGAGGGAAATCCGAAAGGAGGGGCAGCGCACCTTCTA
CTACAACAAGAAAACCAAGGAGCGGCGTTGGGATCGACCGAAAGAGATGG
ATGCCAAAGAAGACGTTGGCGGAGGCGATGTGGGGGGAGTGTCGGGGGTA
TCGAGTGCTGCGGGTGCTGAGAGCGAGTGGGAGGTGAAACAGGACCCGAA
AAGTGGGCGGAGATTCTACCGGAACAAGAGAACAGGAGCGAAACAGTGGG
ACGCCCCACGAGAATTGGCGCAATCTGGGACTGTTGGAGGGGCTGCACCC
GCGAGTGGCGGTGCGGGCAGTGCTGCCGGCGCCAAGGAGGAGGAGTCGGA
GTGGAAGGAGATGGTGGACAAGCGGAGCGGACGGGTATTTTACTTCAACC
GTCGAACGCAAGTGAAGCAGTGGAAGAAACCCAAAGAGCTCGAGGATAAA
GGAGGAGGGGAGAGTGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125103:26..493-

>mRNA_M-pyrifera_M_contig125103.5089.1 ID=mRNA_M-pyrifera_M_contig125103.5089.1|Name=mRNA_M-pyrifera_M_contig125103.5089.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig125103:26..493- (Macrocystis pyrifera P11B4 male)
GCCGCGTCAGACTGGAGGGAAATCCGAAAGGAGGGGCAGCGCACCTTCTA
CTACAACAAGAAAACCAAGGAGCGGCGTTGGGATCGACCGAAAGAGATGG
ATGCCAAAGAAGACGTTGGCGGAGGCGATGTGGGGGGAGTGTCGGGGGTA
TCGAGTGCTGCGGGTGCTGAGAGCGAGTGGGAGGTGAAACAGGACCCGAA
AAGTGGGCGGAGATTCTACCGGAACAAGAGAACAGGAGCGAAACAGTGGG
ACGCCCCACGAGAATTGGCGCAATCTGGGACTGTTGGAGGGGCTGCACCC
GCGAGTGGCGGTGCGGGCAGTGCTGCCGGCGCCAAGGAGGAGGAGTCGGA
GTGGAAGGAGATGGTGGACAAGCGGAGCGGACGGGTATTTTACTTCAACC
GTCGAACGCAAGTGAAGCAGTGGAAGAAACCCAAAGAGCTCGAGGATAAA
GGAGGAGGGGAGAGTGGGGCCGCGTCAGACTGGAGGGAAATCCGAAAGGA
GGGGCAGCGCACCTTCTACTACAACAAGAAAACCAAGGAGCGGCGTTGGG
ATCGACCGAAAGAGATGGATGCCAAAGAAGACGTTGGCGGAGGCGATGTG
GGGGGAGTGTCGGGGGTATCGAGTGCTGCGGGTGCTGAGAGCGAGTGGGA
GGTGAAACAGGACCCGAAAAGTGGGCGGAGATTCTACCGGAACAAGAGAA
CAGGAGCGAAACAGTGGGACGCCCCACGAGAATTGGCGCAATCTGGGACT
GTTGGAGGGGCTGCACCCGCGAGTGGCGGTGCGGGCAGTGCTGCCGGCGC
CAAGGAGGAGGAGTCGGAGTGGAAGGAGATGGTGGACAAGCGGAGCGGAC
GGGTATTTTACTTCAACCGTCGAACGCAAGTGAAGCAGTGGAAGAAACCC
AAAGAGCTCGAGGATAAAGGAGGAGGGGAGAGTGGG
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