mRNA_M-pyrifera_M_contig125067.5083.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125067.5083.1
Unique NamemRNA_M-pyrifera_M_contig125067.5083.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125067.5083.1 vs. uniprot
Match: A0A7X6ARH7_9ACTN (DUF222 domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ARH7_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 7.230e-23
Identity = 58/140 (41.43%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    1 READRAVARGQLLDALPAVADALTDGAISGAHVDTLARAAQRTSVDAVAESDLLAVAKARPADAMRAQINDFVRETTADADLAARLEHQRHSRRGQLFTGDNGMGILHAEFDDTTFAEVSAAVDAETDRLFRLDGGRDTA 420
            READR   R  +L  LP  ADAL  GA+S  HVDTL RA + TS   VA S L+  A  RPAD       D++R    + ++A +   +  +RR  ++    GM +L+ EFD      +  AV+AE +RLF  DGGRD A
Sbjct:   69 READRRARRAAVLAELPDAADALAHGALSVEHVDTLGRAVEATSAREVAASGLIDAATRRPADLHAKDGRDWIRRHQTETEVAEQQRRRHAARRLSMWDNVEGMTVLYGEFDPVAGQRIRTAVEAEANRLFHADGGRDGA 208          
BLAST of mRNA_M-pyrifera_M_contig125067.5083.1 vs. uniprot
Match: A0A3M2FWL0_ACTSX (Uncharacterized protein (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2FWL0_ACTSX)

HSP 1 Score: 85.1 bits (209), Expect = 2.210e-17
Identity = 58/140 (41.43%), Postives = 78/140 (55.71%), Query Frame = 1
Query:    1 READRAVARGQLLDALPAVADALTDGAISGAHVDTLARAAQRTSVDAVAESDLLAVAKARPADAMRAQINDFVRETTADADLAARLEHQRHSRRGQLF--TGDNGMGILHAEFDDTTFAEVSAAVDAETDRLFRLDGGRD 414
            REA RA  R Q+L  +PAV DAL++G ++    D L  AA R   +AV E++LL +      D  R  +  ++ +    AD+ ARL  QR  RRG     TG +GM     E D  T A+V+  +DAE DRL+R DGGRD
Sbjct:  100 REARRAKKRAQVLGEMPAVTDALSEGRLNVETADVLVEAAGRAGAEAV-ETELLGLVAGEDTDGARRTVERWLTKRETAADVQARLARQRRRRRGWRHRDTG-SGMWRFGFELDSVTGAQVAQVLDAEMDRLWRHDGGRD 237          
BLAST of mRNA_M-pyrifera_M_contig125067.5083.1 vs. uniprot
Match: A0A3M2G178_ACTSX (Uncharacterized protein (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G178_ACTSX)

HSP 1 Score: 85.1 bits (209), Expect = 5.210e-17
Identity = 57/140 (40.71%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    1 READRAVARGQLLDALPAVADALTDGAISGAHVDTLARAAQRTSVDAVAESDLLAVAKARPADAMRAQINDFVRETTADADLAARLEHQRHSRRGQLFTGDNGMGILHA--EFDDTTFAEVSAAVDAETDRLFRLDGGRD 414
            REA RA  R  +L  +PAV DAL++G ++    D L  AA R   +AV E +LL +   + AD  R     ++ +    AD+ ARL  QR  RRG     D+G G+     E D  T A+V+  +DAE DRL+R DGGRD
Sbjct:   76 REARRAKKRAAVLGEMPAVTDALSEGRVNVETADVLVEAAARAGTEAV-EGELLGLVTGKDADGARRMAEQWLTKRETAADVEARLARQRRRRRGWRHR-DSGSGMWRFGFELDSVTGAQVAQVLDAEMDRLWRHDGGRD 213          
BLAST of mRNA_M-pyrifera_M_contig125067.5083.1 vs. uniprot
Match: A0A3M2GAT5_ACTSX (HNH endonuclease (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GAT5_ACTSX)

HSP 1 Score: 77.4 bits (189), Expect = 6.410e-14
Identity = 55/132 (41.67%), Postives = 72/132 (54.55%), Query Frame = 1
Query:   22 ARGQLLDALPAVADALTDGAISGAHVDTLARAAQRTSVDAVAESDLLAVAKARPADAMRAQINDFVRETTADADLAARLEHQRHSRRGQLFTGD-NGMGILHAEFDDTTFAEVSAAVDAETDRLFRLDGGRD 414
            ARG  L A+P VADAL DG ++  H D L  AA+RT    V + +LLA+      D  R  I  +V      A+   RL  QR  R G+ +T + +G    H   D    A V+AA++AETDRL+R DGGRD
Sbjct:   97 ARG--LAAMPRVADALADGRLTVEHADALVAAAERTDAARV-DDELLALVADERVDPARRLIRRWVAAHETRAEAEDRLARQRARRSGRWWTDETDGSTHCHVVLDPVVAAAVTAALEAETDRLWRHDGGRD 225          
BLAST of mRNA_M-pyrifera_M_contig125067.5083.1 vs. uniprot
Match: A0A6B1AUQ5_9ACTN (DUF222 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AUQ5_9ACTN)

HSP 1 Score: 75.1 bits (183), Expect = 4.000e-13
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = 1
Query:   37 LDALPAVADALTDGAISGAHVDTLARAAQRTSVDAVAESDLLAVAKARPADAMRAQINDFVRETTADADLAARLEHQRHSRRGQLFTGDNGMGILHAEFDDTTFAEVSAAVDAETDRLFRLDGGRD 414
            L  +P +A++L DGAI+  H      AA +TS + V + +LL +A+    D    Q   +V     D D A     QR +R  + +  D GMG+L AE D T++ +V  A++ E DRL+R DGGRD
Sbjct:   82 LTEMPKLAESLADGAITAEHAAVAVAAAAKTSAEQV-DDELLKLAETSSVDVFAQQSRRWVNRNQVD-DGADAHAAQRRNRSVKHWVNDEGMGVLLAELDQTSYQQVQKAINVEYDRLWRDDGGRD 205          
BLAST of mRNA_M-pyrifera_M_contig125067.5083.1 vs. uniprot
Match: A0A6B1AZ54_9ACTN (DUF222 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AZ54_9ACTN)

HSP 1 Score: 74.3 bits (181), Expect = 7.390e-13
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = 1
Query:   37 LDALPAVADALTDGAISGAHVDTLARAAQRTSVDAVAESDLLAVAKARPADAMRAQINDFVRETTADADLAARLEHQRHSRRGQLFTGDNGMGILHAEFDDTTFAEVSAAVDAETDRLFRLDGGRD 414
            L  +P +A++L DG+I+  H      AA +TS +  A+ +LL +A+    D    Q   +   T  D D A     QR +R  + +  D GMG+L AE D TT+ +V  A++ E DRL+R DGGRD
Sbjct:   84 LSKMPKLAESLADGSITVEHASAAVAAASKTSPEQ-ADDELLKLAETSSVDVFAEQSRRWANRTRTD-DGADAYRTQRKNRSLKHWINDQGMGVLLAELDPTTYQQVRKAINVEYDRLWRDDGGRD 207          
BLAST of mRNA_M-pyrifera_M_contig125067.5083.1 vs. uniprot
Match: A0A6B1AVW3_9ACTN (DUF222 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AVW3_9ACTN)

HSP 1 Score: 68.6 bits (166), Expect = 6.860e-11
Identity = 44/123 (35.77%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   46 LPAVADALTDGAISGAHVDTLARAAQRTSVDAVAESDLLAVAKARPADAMRAQINDFVRETTADADLAARLEHQRHSRRGQLFTGDNGMGILHAEFDDTTFAEVSAAVDAETDRLFRLDGGRD 414
            +P +A++L  G I+  H      AA +TS +  A+ +L  +A++   D    Q   +     +D D A   + QR SR  + +  ++GMG+L AE D T++ +V  AV+AE DRL+R DGGRD
Sbjct:   31 MPKLAESLAAGKITPEHATVAVAAAAKTSAEQ-ADDELFKLAESSSPDMFAQQSRRWANRNQSD-DGAELHQRQRRSRTFKDWVNEDGMGVLLAELDPTSYQQVRKAVNAEYDRLWRDDGGRD 151          
BLAST of mRNA_M-pyrifera_M_contig125067.5083.1 vs. uniprot
Match: A0A7K1ZBB7_9ACTN (DUF222 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZBB7_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 6.470e-9
Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 1
Query:   46 LPAVADALTDGAISGAHVDTLARAAQRTSVDAVAESDLLAVAKARPADAMRAQINDFVRETTADADLAARLEHQRHSRRGQLFTGDNGMGILHAEFDDTTFAEVSAAVDAETDRLFRLDGGRD 414
            +P +A++L  G I+  H      AA +TS + V E  L  +A+    D        +V    +D D     + QR +R  + +  ++GMG+L AE D T++  V  A++AE DRL+R DGGRD
Sbjct:   85 MPKLAESLAGGKITAEHAAVAVGAASKTSAEQVDEQ-LSGIAEGASVDMFAEHSRRWVNRNQSD-DGEELHKRQRRNRCFKDWVNEDGMGVLVAELDPTSYQTVRKAINAEYDRLWRDDGGRD 205          
BLAST of mRNA_M-pyrifera_M_contig125067.5083.1 vs. uniprot
Match: A0A6B1B428_9ACTN (DUF222 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B428_9ACTN)

HSP 1 Score: 60.8 bits (146), Expect = 4.330e-8
Identity = 44/138 (31.88%), Postives = 66/138 (47.83%), Query Frame = 1
Query:    1 READRAVARGQLLDALPAVADALTDGAISGAHVDTLARAAQRTSVDAVAESDLLAVAKARPADAMRAQINDFVRETTADADLAARLEHQRHSRRGQLFTGDNGMGILHAEFDDTTFAEVSAAVDAETDRLFRLDGGRD 414
            R A  A      L  +P +A++L  G I+  H      AA +TS   V E +L  +A+    D+       +      D D A   E +R +R    +  D GMG++ AE D T++ +   A++ E DRL+R DGGRD
Sbjct:  107 RAARSAAVTASGLAEMPKLAESLASGDITAEHAAAAVSAAAKTSPQQV-EDELSKLAEKSSVDSFAKHSRRWANRNQTD-DGADAHETRRRNRSLADWVNDEGMGVILAELDPTSYQQARNAINIEYDRLWRADGGRD 242          
BLAST of mRNA_M-pyrifera_M_contig125067.5083.1 vs. uniprot
Match: A0A7K2BV06_9ACTN (DUF222 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2BV06_9ACTN)

HSP 1 Score: 59.3 bits (142), Expect = 1.510e-7
Identity = 52/140 (37.14%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    1 READRAVARGQLLDALPAVADALTDGAISGAHVDTLARAAQRTSVDAVAESDLLAVAKARPADAMRAQINDFVRET---TAD-ADLAARLEHQRHSRRG--QLFTGDNGMGILHAEFDDTTFAEVSAAVDAETDRLFRLD 402
            R+A   V   Q+++A+PAV DA+  G +S A+   LA A ++TS   VA  D L +AKA+   +MR +   FVRE    TAD  D     E++R   R   +++ GD+GM  L  EFD  T   +++ + AE  RL  +D
Sbjct:   78 RDARSQVKTAQVIEAVPAVRDAVESGRVSQANARRLAEAVEKTSAADVASDDEL-LAKAQ---SMRPE--QFVREARRWTADHQDDGGVSEYRRMRARRCVRIWDGDDGMVHLRGEFDPVTGKRIASRLRAEARRLHDID 211          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125067.5083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7X6ARH7_9ACTN7.230e-2341.43DUF222 domain-containing protein (Fragment) n=1 Ta... [more]
A0A3M2FWL0_ACTSX2.210e-1741.43Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A3M2G178_ACTSX5.210e-1740.71Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A3M2GAT5_ACTSX6.410e-1441.67HNH endonuclease (Fragment) n=1 Tax=Actinomyces sp... [more]
A0A6B1AUQ5_9ACTN4.000e-1337.30DUF222 domain-containing protein (Fragment) n=1 Ta... [more]
A0A6B1AZ54_9ACTN7.390e-1337.30DUF222 domain-containing protein n=1 Tax=Acidimicr... [more]
A0A6B1AVW3_9ACTN6.860e-1135.77DUF222 domain-containing protein n=1 Tax=Acidimicr... [more]
A0A7K1ZBB7_9ACTN6.470e-934.15DUF222 domain-containing protein n=2 Tax=Acidimicr... [more]
A0A6B1B428_9ACTN4.330e-831.88DUF222 domain-containing protein n=1 Tax=Acidimicr... [more]
A0A7K2BV06_9ACTN1.510e-737.14DUF222 domain-containing protein n=1 Tax=Acidimicr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125067contigM-pyrifera_M_contig125067:83..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue7.5e-07
Seed eggNOG ortholog1313172.YM304_05630
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsCOG1403@1,COG1403@2
COG Functional cat.V
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.0046818-CDS-M-pyrifera_M_contig125067:82..5081622815767.0046818-CDS-M-pyrifera_M_contig125067:82..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125067 83..508 +
1692277559.7727396-CDS-M-pyrifera_M_contig125067:82..5081692277559.7727396-CDS-M-pyrifera_M_contig125067:82..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125067 83..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125067.5083.1prot_M-pyrifera_M_contig125067.5083.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125067 83..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125067.5083.1

>prot_M-pyrifera_M_contig125067.5083.1 ID=prot_M-pyrifera_M_contig125067.5083.1|Name=mRNA_M-pyrifera_M_contig125067.5083.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
READRAVARGQLLDALPAVADALTDGAISGAHVDTLARAAQRTSVDAVAE
SDLLAVAKARPADAMRAQINDFVRETTADADLAARLEHQRHSRRGQLFTG
DNGMGILHAEFDDTTFAEVSAAVDAETDRLFRLDGGRDTAAH
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mRNA from alignment at M-pyrifera_M_contig125067:83..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125067.5083.1 ID=mRNA_M-pyrifera_M_contig125067.5083.1|Name=mRNA_M-pyrifera_M_contig125067.5083.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig125067:83..508+ (Macrocystis pyrifera P11B4 male)
CGCGAAGCCGATCGTGCCGTGGCCCGCGGCCAACTACTCGACGCGCTCCC CGCGGTGGCCGATGCGTTGACCGACGGCGCCATCTCCGGCGCCCATGTCG ACACCCTGGCCCGCGCTGCCCAACGCACCTCGGTCGACGCCGTCGCCGAG TCCGACCTGTTGGCGGTGGCCAAGGCTCGGCCGGCCGACGCGATGCGAGC GCAGATCAACGACTTCGTCCGTGAGACCACCGCCGACGCCGACCTCGCGG CCCGGCTCGAACACCAACGCCACAGCCGACGCGGCCAGCTCTTCACCGGC GACAACGGCATGGGCATCCTCCACGCCGAGTTCGACGACACCACGTTCGC CGAGGTCTCCGCCGCGGTCGACGCCGAAACCGACCGGCTCTTCCGACTCG ACGGTGGACGCGACACCGCTGCCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125067:83..508+

>mRNA_M-pyrifera_M_contig125067.5083.1 ID=mRNA_M-pyrifera_M_contig125067.5083.1|Name=mRNA_M-pyrifera_M_contig125067.5083.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig125067:83..508+ (Macrocystis pyrifera P11B4 male)
CGCGAAGCCGATCGTGCCGTGGCCCGCGGCCAACTACTCGACGCGCTCCC
CGCGGTGGCCGATGCGTTGACCGACGGCGCCATCTCCGGCGCCCATGTCG
ACACCCTGGCCCGCGCTGCCCAACGCACCTCGGTCGACGCCGTCGCCGAG
TCCGACCTGTTGGCGGTGGCCAAGGCTCGGCCGGCCGACGCGATGCGAGC
GCAGATCAACGACTTCGTCCGTGAGACCACCGCCGACGCCGACCTCGCGG
CCCGGCTCGAACACCAACGCCACAGCCGACGCGGCCAGCTCTTCACCGGC
GACAACGGCATGGGCATCCTCCACGCCGAGTTCGACGACACCACGTTCGC
CGAGGTCTCCGCCGCGGTCGACGCCGAAACCGACCGGCTCTTCCGACTCG
ACGGTGGACGCGACACCGCTGCCCACCGCGAAGCCGATCGTGCCGTGGCC
CGCGGCCAACTACTCGACGCGCTCCCCGCGGTGGCCGATGCGTTGACCGA
CGGCGCCATCTCCGGCGCCCATGTCGACACCCTGGCCCGCGCTGCCCAAC
GCACCTCGGTCGACGCCGTCGCCGAGTCCGACCTGTTGGCGGTGGCCAAG
GCTCGGCCGGCCGACGCGATGCGAGCGCAGATCAACGACTTCGTCCGTGA
GACCACCGCCGACGCCGACCTCGCGGCCCGGCTCGAACACCAACGCCACA
GCCGACGCGGCCAGCTCTTCACCGGCGACAACGGCATGGGCATCCTCCAC
GCCGAGTTCGACGACACCACGTTCGCCGAGGTCTCCGCCGCGGTCGACGC
CGAAACCGACCGGCTCTTCCGACTCGACGGTGGACGCGACACCGCTGCCC
AC
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