mRNA_M-pyrifera_M_contig125063.5082.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125063.5082.1
Unique NamemRNA_M-pyrifera_M_contig125063.5082.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A517WEE5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WEE5_9PLAN)

HSP 1 Score: 191 bits (485), Expect = 1.060e-60
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 1
Query:    1 LDLMPAVMIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQVTTAGCFCEQEVKIDGFSGGCGALVRFVCWCRFPVSRA 288
            +DL+PAVMIDGFDFAERRRGVKTEFCPNVAGFCP VS NLSWSG FLSCCALCQKWIQVT AGCF EQEVK DGFSGGCGALVRFV WCRFPVSRA
Sbjct:    1 MDLVPAVMIDGFDFAERRRGVKTEFCPNVAGFCPGVSQNLSWSGRFLSCCALCQKWIQVTGAGCFREQEVKTDGFSGGCGALVRFVSWCRFPVSRA 96          
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: UPI00118A7A64 (hypothetical protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI00118A7A64)

HSP 1 Score: 189 bits (481), Expect = 1.060e-59
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 1
Query:    1 LDLMPAVMIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQVTTAGCFCEQEVKIDGFSGGCGALVRFVCWCRFPVSRA 288
            +DL+PA++IDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQ T AGCF EQE+KIDGFSGGC ALVRFV W RFPVSRA
Sbjct:    1 MDLVPAILIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQATGAGCFREQEMKIDGFSGGCAALVRFVAWYRFPVSRA 96          
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A2E7K8Y9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7K8Y9_9PLAN)

HSP 1 Score: 181 bits (460), Expect = 1.530e-55
Identity = 80/96 (83.33%), Postives = 85/96 (88.54%), Query Frame = 1
Query:    1 LDLMPAVMIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQVTTAGCFCEQEVKIDGFSGGCGALVRFVCWCRFPVSRA 288
            +DL+PA+MIDGFDFAERRRGVKTEFCPNVAGFCP VSGNL+WSG FLSCCALC KWI    AGCF EQ VKIDGFSG CGALVRFVCWC FP+SRA
Sbjct:   37 MDLLPAIMIDGFDFAERRRGVKTEFCPNVAGFCPGVSGNLTWSGRFLSCCALCLKWIDAIYAGCFREQGVKIDGFSGECGALVRFVCWCLFPISRA 132          
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A517PQ73_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PQ73_9PLAN)

HSP 1 Score: 93.2 bits (230), Expect = 6.390e-23
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 1
Query:    1 LDLMPAVMIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLS 144
            +DL+PA++IDGFDFAERRRGVKTEFCPNVAGFCP V+GNLSW G FLS
Sbjct:    1 MDLVPAILIDGFDFAERRRGVKTEFCPNVAGFCPGVTGNLSWYGRFLS 48          
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A518A2Y4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A2Y4_9PLAN)

HSP 1 Score: 71.6 bits (174), Expect = 5.660e-13
Identity = 50/125 (40.00%), Postives = 62/125 (49.60%), Query Frame = 1
Query:   10 MPAVMIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQVTTAGCFCEQEVKIDGFSGGCGALVRFVCWC---------RFPVSRASQIGNRIRGGRSRSR*VYSVVGG 357
            MPA+ ++ FD  E   GV+T+ CPNV+GFCP VSG LSW G FLS      +  QV         E  ++          RF C C           P SRASQ+G++IR GR  S  V S  GG
Sbjct:   26 MPAMPLEDFDSLEGDVGVQTKICPNVSGFCPVVSGILSWCGRFLS------QLGQVKRGE---HSEPVLESQVKSLKKRRRFRCSCVSGAACSSAGSPASRASQMGSKIRFGRCGSSSVCSDNGG 141          
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A2E7KFL9_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFL9_9PLAN)

HSP 1 Score: 66.2 bits (160), Expect = 1.540e-10
Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   37 DFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALC--QKWIQVTTAGCFCEQEVKIDGFSGGCGALV 249
            +FAER  GVKTEFCP+VAGFCP VSG LS SG  +S  AL   ++  ++ +  C     VK  G SGGCGALV
Sbjct:   93 NFAERDVGVKTEFCPDVAGFCPGVSGILSSSGRGVSWFALNIGRRTFRIGSE-CSGGNGVKSGGGSGGCGALV 164          
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A518A471_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A471_9PLAN)

HSP 1 Score: 64.3 bits (155), Expect = 4.990e-10
Identity = 47/115 (40.87%), Postives = 57/115 (49.57%), Query Frame = 2
Query:   29 MVLILLNGVGESRQNFVPMWPDFVLLCPGICPGLACFCP----------AVPCVKSGFK*QLRDVSVNRK*KSMVFQVDVGHWCVLFAGVAFPSRARARLGTGYGEAGVDQGEFI 343
            M LIL NG   SRQNFVPMWPDFV     +CP LA  CP           +P   SG K +++  S +   +S+V  V V          A P RARARLG  Y     DQ +F+
Sbjct:   31 MSLILPNGRWGSRQNFVPMWPDFVRFLSRLCPNLAQICPYFAQFGERTFRMPSKCSGGK-RMKITSDSGASESLVRCVPVH---------ANPPRARARLGAAYDSGRSDQVQFV 135          
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A517PIH5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PIH5_9PLAN)

HSP 1 Score: 63.2 bits (152), Expect = 8.630e-10
Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = -3
Query:   36 LARETGKRHQQ-TKRTSAPHPPEKPSIFTSCS-QKHPAVVT*IHF*HRAQQDRNKPDQDKFPDTAGQNPATLGQNSVLTPRRRSAKS 290
            LAR  G+     T  TSAP PPE   +FT    +++  +   +     A QD+ +P QDK  DT GQNPAT GQNSVLTPR  S +S
Sbjct:    5 LARARGRLASTGTFNTSAPFPPETTPLFTLFPLEQYEPMRNVLPTLFTAHQDKPRPHQDKIHDTPGQNPATSGQNSVLTPRCHSTQS 91          
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A517WKL7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WKL7_9PLAN)

HSP 1 Score: 64.3 bits (155), Expect = 1.070e-9
Identity = 46/108 (42.59%), Postives = 52/108 (48.15%), Query Frame = 1
Query:   37 DFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQVTTAGCFC--EQEVKIDGFSGGCGALVRFVCWCRFPVSRASQIGNRIRGGRSRSR*VYSVVG 354
            D  E R GVKTEFCPNVA FCP VSG LS SG  LS  AL   W ++   G  C  E++VK +G  GG    V     C     RA          R+R    Y  VG
Sbjct:   26 DSVEGRGGVKTEFCPNVARFCPGVSGILSHSGRGLSASAL--PWGRLFRRGAQCSGEKQVKSEGV-GGADVTVVLEMQCSEDAPRA----------RARRELTYDSVG 120          
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Match: A0A2E7K9M7_9PLAN (Cytochrome c domain-containing protein n=10 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K9M7_9PLAN)

HSP 1 Score: 64.3 bits (155), Expect = 1.670e-9
Identity = 48/105 (45.71%), Postives = 54/105 (51.43%), Query Frame = 1
Query:   49 RRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALCQKWIQVTT---AGCFCEQEVKIDGFSGGCGALVRFVCWCRFPVSRASQIGNRIRGGRSRSR*VYSVVG 354
            RR GVKTEFCP+VAGFCP V+  LS  G  LS CAL   W  +T    A CF  Q VKI G   G G L       R  V R   +GN  R  R+R    Y+  G
Sbjct:   43 RREGVKTEFCPDVAGFCPGVAWILSLFGRGLSWCAL--NWEGLTLRSGACCFGRQMVKIGG---GAGEL-------RSEVGRVPVLGNVPRA-RARRELPYASAG 134          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125063.5082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A517WEE5_9PLAN1.060e-6090.63Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
UPI00118A7A641.060e-5988.54hypothetical protein n=1 Tax=Gimesia chilikensis T... [more]
A0A2E7K8Y9_9PLAN1.530e-5583.33Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=... [more]
A0A517PQ73_9PLAN6.390e-2383.33Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A518A2Y4_9PLAN5.660e-1340.00Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A2E7KFL9_9PLAN1.540e-1054.79Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A518A471_9PLAN4.990e-1040.87Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A517PIH5_9PLAN8.630e-1045.98Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517WKL7_9PLAN1.070e-942.59Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A2E7K9M7_9PLAN1.670e-945.71Cytochrome c domain-containing protein n=10 Tax=Gi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125063contigM-pyrifera_M_contig125063:2..371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size370
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125063.5082.1prot_M-pyrifera_M_contig125063.5082.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125063 11..337 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.9487338-UTR-M-pyrifera_M_contig125063:1..101622815766.9487338-UTR-M-pyrifera_M_contig125063:1..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125063 2..10 +
1692277559.7455432-UTR-M-pyrifera_M_contig125063:1..101692277559.7455432-UTR-M-pyrifera_M_contig125063:1..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125063 2..10 +
1622815766.97218-UTR-M-pyrifera_M_contig125063:337..3711622815766.97218-UTR-M-pyrifera_M_contig125063:337..371Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125063 338..371 +
1692277559.763535-UTR-M-pyrifera_M_contig125063:337..3711692277559.763535-UTR-M-pyrifera_M_contig125063:337..371Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125063 338..371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.9619853-CDS-M-pyrifera_M_contig125063:10..3371622815766.9619853-CDS-M-pyrifera_M_contig125063:10..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125063 11..337 +
1692277559.75504-CDS-M-pyrifera_M_contig125063:10..3371692277559.75504-CDS-M-pyrifera_M_contig125063:10..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125063 11..337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125063.5082.1

>prot_M-pyrifera_M_contig125063.5082.1 ID=prot_M-pyrifera_M_contig125063.5082.1|Name=mRNA_M-pyrifera_M_contig125063.5082.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MPAVMIDGFDFAERRRGVKTEFCPNVAGFCPAVSGNLSWSGLFLSCCALC
QKWIQVTTAGCFCEQEVKIDGFSGGCGALVRFVCWCRFPVSRASQIGNRI
RGGRSRSR*
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mRNA from alignment at M-pyrifera_M_contig125063:2..371+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125063.5082.1 ID=mRNA_M-pyrifera_M_contig125063.5082.1|Name=mRNA_M-pyrifera_M_contig125063.5082.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=370bp|location=Sequence derived from alignment at M-pyrifera_M_contig125063:2..371+ (Macrocystis pyrifera P11B4 male)
TTGGATTTAATGCCTGCGGTTATGATTGATGGTTTTGATTTTGCTGAACG GCGTCGGGGAGTCAAGACAGAATTTTGTCCCAATGTGGCCGGATTTTGTC CTGCTGTGTCCGGGAATTTGTCCTGGTCTGGCTTGTTTCTGTCCTGCTGT GCCCTGTGTCAAAAGTGGATTCAAGTAACAACTGCGGGATGTTTCTGTGA ACAGGAAGTGAAAATCGATGGTTTTTCAGGTGGATGTGGGGCACTGGTGC GTTTTGTTTGCTGGTGTCGCTTTCCCGTCTCGCGCGCGAGCCAGATTGGG AACAGGATACGGGGAGGCAGGAGTCGATCAAGGTGAGTTTATTCAGTTGT TGGTGGGGGAAGTTCAGTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125063:2..371+

>mRNA_M-pyrifera_M_contig125063.5082.1 ID=mRNA_M-pyrifera_M_contig125063.5082.1|Name=mRNA_M-pyrifera_M_contig125063.5082.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig125063:2..371+ (Macrocystis pyrifera P11B4 male)
ATGCCTGCGGTTATGATTGATGGTTTTGATTTTGCTGAACGGCGTCGGGG
AGTCAAGACAGAATTTTGTCCCAATGTGGCCGGATTTTGTCCTGCTGTGT
CCGGGAATTTGTCCTGGTCTGGCTTGTTTCTGTCCTGCTGTGCCCTGTGT
CAAAAGTGGATTCAAGTAACAACTGCGGGATGTTTCTGTGAACAGGAAGT
GAAAATCGATGGTTTTTCAGGTGGATGTGGGGCACTGGTGCGTTTTGTTT
GCTGGTGTCGCTTTCCCGTCTCGCGCGCGAGCCAGATTGGGAACAGGATA
CGGGGAGGCAGGAGTCGATCAAGGTGAATGCCTGCGGTTATGATTGATGG
TTTTGATTTTGCTGAACGGCGTCGGGGAGTCAAGACAGAATTTTGTCCCA
ATGTGGCCGGATTTTGTCCTGCTGTGTCCGGGAATTTGTCCTGGTCTGGC
TTGTTTCTGTCCTGCTGTGCCCTGTGTCAAAAGTGGATTCAAGTAACAAC
TGCGGGATGTTTCTGTGAACAGGAAGTGAAAATCGATGGTTTTTCAGGTG
GATGTGGGGCACTGGTGCGTTTTGTTTGCTGGTGTCGCTTTCCCGTCTCG
CGCGCGAGCCAGATTGGGAACAGGATACGGGGAGGCAGGAGTCGATCAAG
GTGA
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