mRNA_M-pyrifera_M_contig125049.5079.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125049.5079.1
Unique NamemRNA_M-pyrifera_M_contig125049.5079.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125049.5079.1 vs. uniprot
Match: UPI00074FAE24 (ceruloplasmin isoform X1 n=2 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FAE24)

HSP 1 Score: 113 bits (282), Expect = 4.900e-27
Identity = 54/95 (56.84%), Postives = 68/95 (71.58%), Query Frame = 1
Query:   13 TAKVRTHYIAAEEVMWNYAPTGMNVFKGVPLLEDPESFPFFVEGPTFIGGTYIKALFFEYTDATFTEKKDMGPDWEHMGFLGPPLFAEVGDTFEV 297
            TAK+R +YIAAEE++WNYAP+G+N F G  L+ D ES  FF +    IGGTY KA+F EY D TFTE+K+  P+ EH+G LGP + AEVGD   V
Sbjct:  368 TAKIRHYYIAAEEILWNYAPSGINNFTGEELINDGESEAFFEQNEKRIGGTYKKAVFREYVDGTFTERKERLPEEEHLGLLGPVIRAEVGDIIRV 462          
BLAST of mRNA_M-pyrifera_M_contig125049.5079.1 vs. uniprot
Match: A0A2H1EIX9_9ARCH (Putative Multicopper oxidase n=1 Tax=Candidatus Nitrosotalea sinensis TaxID=1499975 RepID=A0A2H1EIX9_9ARCH)

HSP 1 Score: 110 bits (275), Expect = 9.360e-27
Identity = 49/93 (52.69%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   19 KVRTHYIAAEEVMWNYAPTGMNVFKGVPLLEDPESFPFFVEGPTFIGGTYIKALFFEYTDATFTEKKDMGPDWEHMGFLGPPLFAEVGDTFEV 297
            + RT+YIA++EV WNYAPTG+N   GVPL +D  +  + + G   IG TYIK L+ EY+D+TFT +K +G  WEH+G LGP + AEVGD  +V
Sbjct:   52 QTRTYYIASDEVQWNYAPTGINQITGVPLKDDKIASVYTISGKDRIGSTYIKCLYREYSDSTFTTQKTLGAKWEHLGMLGPVIHAEVGDVIKV 144          
BLAST of mRNA_M-pyrifera_M_contig125049.5079.1 vs. uniprot
Match: A0A7S4HLT9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HLT9_9EUKA)

HSP 1 Score: 108 bits (271), Expect = 3.750e-26
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   19 KVRTHYIAAEEVMWNYAPTGMNVFKGVPLLEDPESFPFFVEGPTFIGGTYIKALFFEYTDATFTEKKDMGPDWEHMGFLGPPLFAEVGDTFEV 297
            + R HYIAA+EV+W+YAP+G+N+  G PLLED  +  FF EGP  IGG Y+KA+F EY D++F E  D   +  H G LGP ++AEVGDT +V
Sbjct:   19 ETRVHYIAADEVIWDYAPSGINLVNGNPLLEDENAAVFFEEGPDRIGGKYLKAIFREYKDSSFNELMDDDDEMRHKGILGPIIWAEVGDTIKV 111          
BLAST of mRNA_M-pyrifera_M_contig125049.5079.1 vs. uniprot
Match: A0A1G0AEU7_9EURY (Copper oxidase n=1 Tax=Euryarchaeota archaeon RBG_19FT_COMBO_69_17 TaxID=1797984 RepID=A0A1G0AEU7_9EURY)

HSP 1 Score: 107 bits (268), Expect = 7.550e-26
Identity = 53/93 (56.99%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   19 KVRTHYIAAEEVMWNYAPTGMNVFKGVPLLEDPESFPFFVEGPTFIGGTYIKALFFEYTDATFTEKKDMGPDWEHMGFLGPPLFAEVGDTFEV 297
            KVRT+YIA +EV W+YAP G N   G P  E+   F     GP  IG  Y+KAL+ EYTDATFT  K   P+WEH+G LGP LFAEVGDT  V
Sbjct:   22 KVRTYYIAVDEVEWDYAPLGYNAITGEPFGEEENVFV--ANGPYTIGSVYVKALYREYTDATFTSLKPRPPEWEHLGALGPLLFAEVGDTIVV 112          
BLAST of mRNA_M-pyrifera_M_contig125049.5079.1 vs. uniprot
Match: A0A286XCE4_CAVPO (Ceruloplasmin n=4 Tax=Cavia porcellus TaxID=10141 RepID=A0A286XCE4_CAVPO)

HSP 1 Score: 109 bits (273), Expect = 8.030e-26
Identity = 51/93 (54.84%), Postives = 70/93 (75.27%), Query Frame = 1
Query:   22 VRTHYIAAEEVMWNYAPTGMNVFKGVPLLE-DPESFPFFVEGPTFIGGTYIKALFFEYTDATFTEKKDMGPDWEHMGFLGPPLFAEVGDTFEV 297
            VR +YIAAEE++WNYAP+G ++F    L   + +S  FF +GPT IGGTY K ++ EYTD +FT++K+ GPD EH+G LGP ++AEVGDT +V
Sbjct:  371 VRHYYIAAEEIIWNYAPSGTDIFTNKSLAAPESDSAVFFEQGPTRIGGTYKKLVYHEYTDDSFTKQKERGPDEEHLGILGPVIWAEVGDTIKV 463          
BLAST of mRNA_M-pyrifera_M_contig125049.5079.1 vs. uniprot
Match: A0A6P6F2Q3_OCTDE (ceruloplasmin n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P6F2Q3_OCTDE)

HSP 1 Score: 108 bits (271), Expect = 1.470e-25
Identity = 50/93 (53.76%), Postives = 71/93 (76.34%), Query Frame = 1
Query:   22 VRTHYIAAEEVMWNYAPTGMNVFKGVPLLE-DPESFPFFVEGPTFIGGTYIKALFFEYTDATFTEKKDMGPDWEHMGFLGPPLFAEVGDTFEV 297
            VR +YIAAEE++WNYAP+G ++F    L+  + +S  FF +GPT IGG+Y K ++ EYTDA+FT++K+ GPD EH+G LGP ++ EVGDT +V
Sbjct:   97 VRHYYIAAEEIIWNYAPSGKDIFTNESLIAPESDSRVFFEQGPTRIGGSYKKLVYREYTDASFTKRKERGPDDEHLGILGPVIWGEVGDTIKV 189          
BLAST of mRNA_M-pyrifera_M_contig125049.5079.1 vs. uniprot
Match: G5EA72_SARHA (Ceruloplasmin-like n=2 Tax=Sarcophilus harrisii TaxID=9305 RepID=G5EA72_SARHA)

HSP 1 Score: 108 bits (270), Expect = 2.040e-25
Identity = 54/94 (57.45%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   19 KVRTHYIAAEEVMWNYAPTGMNVFKGVPLLED-PESFPFFVEGPTFIGGTYIKALFFEYTDATFTEKKDMGPDWEHMGFLGPPLFAEVGDTFEV 297
            KVR +YIAAEEV+WNYAP+G+N F G  L     ES PFFV GPT IGGTY+K  +  YTD +F +KK  GP+  H+G LGP +  EVGDT  V
Sbjct:  373 KVRHYYIAAEEVLWNYAPSGINYFTGKSLTAPGSESAPFFVRGPTRIGGTYVKLHYQAYTDDSFLKKKIRGPEERHLGLLGPVIKVEVGDTVRV 466          
BLAST of mRNA_M-pyrifera_M_contig125049.5079.1 vs. uniprot
Match: A0A8B7U3F1_CASCN (Ceruloplasmin n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A8B7U3F1_CASCN)

HSP 1 Score: 107 bits (268), Expect = 3.800e-25
Identity = 54/95 (56.84%), Postives = 69/95 (72.63%), Query Frame = 1
Query:   16 AKVRTHYIAAEEVMWNYAPTGMNVFKGVPLLED-PESFPFFVEGPTFIGGTYIKALFFEYTDATFTEKKDMGPDWEHMGFLGPPLFAEVGDTFEV 297
            A+VR  YIAAEEV+WNYAP+G++VF    L     ES  FF +GPT IGG+Y K ++ EYTDA+FT++K+ GP  EH G LGP ++AEVGDT  V
Sbjct:  369 AQVRHFYIAAEEVIWNYAPSGIDVFTRENLTAPGSESAVFFEQGPTRIGGSYKKLVYREYTDASFTQRKERGPAEEHFGLLGPLIYAEVGDTIRV 463          
BLAST of mRNA_M-pyrifera_M_contig125049.5079.1 vs. uniprot
Match: A0A091DNZ8_FUKDA (Ceruloplasmin n=5 Tax=Bathyergidae TaxID=10167 RepID=A0A091DNZ8_FUKDA)

HSP 1 Score: 107 bits (266), Expect = 7.070e-25
Identity = 49/93 (52.69%), Postives = 71/93 (76.34%), Query Frame = 1
Query:   22 VRTHYIAAEEVMWNYAPTGMNVFKGVPLLE-DPESFPFFVEGPTFIGGTYIKALFFEYTDATFTEKKDMGPDWEHMGFLGPPLFAEVGDTFEV 297
            VR +YIAAEE++WNYAP+G ++F    L   + +S  FF +GPT IGG+Y K ++ EYTDA+FT++K+ GP+ EH+G LGP ++AEVGDT ++
Sbjct:  371 VRHYYIAAEEIVWNYAPSGTDIFTNENLTAPESDSAVFFEQGPTRIGGSYKKLVYREYTDASFTKQKERGPEEEHLGVLGPVIWAEVGDTLKI 463          
BLAST of mRNA_M-pyrifera_M_contig125049.5079.1 vs. uniprot
Match: A0A8K1DAP8_9ARCH (Multicopper oxidase n=2 Tax=Candidatus Nitrosotalea sp. TS TaxID=2341020 RepID=A0A8K1DAP8_9ARCH)

HSP 1 Score: 100 bits (248), Expect = 8.180e-25
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 1
Query:   25 RTHYIAAEEVMWNYAPTGMNVFKGVPLLEDPESFPFFVEGPTFIGGTYIKALFFEYTDATFTEKKDMGPDWEHMGFLGPPLFAEVGDTFEV 297
            RT+YIAA+EV WNYAP+GMN+  G PL  DP +  +   G   IG  Y+K L+  YTD TF+  +     WEH+G LGP + AEVGDT +V
Sbjct:   16 RTYYIAADEVKWNYAPSGMNLITGKPLAADPATALYTQNGKDRIGSVYLKCLYQGYTDGTFSTLQPRTTKWEHLGILGPVIHAEVGDTIQV 106          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125049.5079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00074FAE244.900e-2756.84ceruloplasmin isoform X1 n=2 Tax=Gekko japonicus T... [more]
A0A2H1EIX9_9ARCH9.360e-2752.69Putative Multicopper oxidase n=1 Tax=Candidatus Ni... [more]
A0A7S4HLT9_9EUKA3.750e-2653.76Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A1G0AEU7_9EURY7.550e-2656.99Copper oxidase n=1 Tax=Euryarchaeota archaeon RBG_... [more]
A0A286XCE4_CAVPO8.030e-2654.84Ceruloplasmin n=4 Tax=Cavia porcellus TaxID=10141 ... [more]
A0A6P6F2Q3_OCTDE1.470e-2553.76ceruloplasmin n=1 Tax=Octodon degus TaxID=10160 Re... [more]
G5EA72_SARHA2.040e-2557.45Ceruloplasmin-like n=2 Tax=Sarcophilus harrisii Ta... [more]
A0A8B7U3F1_CASCN3.800e-2556.84Ceruloplasmin n=1 Tax=Castor canadensis TaxID=5133... [more]
A0A091DNZ8_FUKDA7.070e-2552.69Ceruloplasmin n=5 Tax=Bathyergidae TaxID=10167 Rep... [more]
A0A8K1DAP8_9ARCH8.180e-2550.55Multicopper oxidase n=2 Tax=Candidatus Nitrosotale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125049contigM-pyrifera_M_contig125049:17..313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score112.5
Seed ortholog evalue1.2e-22
Seed eggNOG ortholog9305.ENSSHAP00000022389
Preferred nameCP
KEGG rclassRC02758
KEGG koko:K13624
KEGG ReactionR00078
KEGG Pathwayko00860,ko04216,map00860,map04216
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the multicopper oxidase family
EggNOG OGs38BPV@33154,3BAZ3@33208,3CW79@33213,3J9YC@40674,48CZW@7711,497Q5@7742,4K7ND@9263,COG2132@1,KOG1263@2759
EC1.16.3.1
COG Functional cat.Q
Best tax levelMetatheria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.8146813-CDS-M-pyrifera_M_contig125049:16..3131622815766.8146813-CDS-M-pyrifera_M_contig125049:16..313Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125049 17..313 -
1692277559.6683927-CDS-M-pyrifera_M_contig125049:16..3131692277559.6683927-CDS-M-pyrifera_M_contig125049:16..313Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125049 17..313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125049.5079.1prot_M-pyrifera_M_contig125049.5079.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125049 17..313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125049.5079.1

>prot_M-pyrifera_M_contig125049.5079.1 ID=prot_M-pyrifera_M_contig125049.5079.1|Name=mRNA_M-pyrifera_M_contig125049.5079.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
AGTSTAKVRTHYIAAEEVMWNYAPTGMNVFKGVPLLEDPESFPFFVEGPT
FIGGTYIKALFFEYTDATFTEKKDMGPDWEHMGFLGPPLFAEVGDTFEV
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mRNA from alignment at M-pyrifera_M_contig125049:17..313-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125049.5079.1 ID=mRNA_M-pyrifera_M_contig125049.5079.1|Name=mRNA_M-pyrifera_M_contig125049.5079.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig125049:17..313- (Macrocystis pyrifera P11B4 male)
GCCGGCACCAGCACTGCAAAAGTTCGCACACACTACATCGCCGCCGAGGA GGTGATGTGGAACTATGCGCCCACTGGCATGAACGTGTTCAAGGGCGTGC CACTCCTCGAGGACCCGGAGTCGTTTCCATTCTTCGTGGAGGGTCCCACC TTCATCGGTGGCACCTACATCAAGGCCCTCTTCTTCGAGTACACCGACGC CACCTTCACCGAGAAGAAGGACATGGGCCCTGACTGGGAGCACATGGGAT TCTTGGGACCTCCCCTCTTTGCAGAGGTCGGAGACACCTTTGAGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125049:17..313-

>mRNA_M-pyrifera_M_contig125049.5079.1 ID=mRNA_M-pyrifera_M_contig125049.5079.1|Name=mRNA_M-pyrifera_M_contig125049.5079.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig125049:17..313- (Macrocystis pyrifera P11B4 male)
GCCGGCACCAGCACTGCAAAAGTTCGCACACACTACATCGCCGCCGAGGA
GGTGATGTGGAACTATGCGCCCACTGGCATGAACGTGTTCAAGGGCGTGC
CACTCCTCGAGGACCCGGAGTCGTTTCCATTCTTCGTGGAGGGTCCCACC
TTCATCGGTGGCACCTACATCAAGGCCCTCTTCTTCGAGTACACCGACGC
CACCTTCACCGAGAAGAAGGACATGGGCCCTGACTGGGAGCACATGGGAT
TCTTGGGACCTCCCCTCTTTGCAGAGGTCGGAGACACCTTTGAGGTAGCC
GGCACCAGCACTGCAAAAGTTCGCACACACTACATCGCCGCCGAGGAGGT
GATGTGGAACTATGCGCCCACTGGCATGAACGTGTTCAAGGGCGTGCCAC
TCCTCGAGGACCCGGAGTCGTTTCCATTCTTCGTGGAGGGTCCCACCTTC
ATCGGTGGCACCTACATCAAGGCCCTCTTCTTCGAGTACACCGACGCCAC
CTTCACCGAGAAGAAGGACATGGGCCCTGACTGGGAGCACATGGGATTCT
TGGGACCTCCCCTCTTTGCAGAGGTCGGAGACACCTTTGAGGTA
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