mRNA_M-pyrifera_M_contig125021.5076.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125021.5076.1
Unique NamemRNA_M-pyrifera_M_contig125021.5076.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125021.5076.1 vs. uniprot
Match: A0A3Q0INF9_DIACI (Krueppel-like factor 16 n=1 Tax=Diaphorina citri TaxID=121845 RepID=A0A3Q0INF9_DIACI)

HSP 1 Score: 58.2 bits (139), Expect = 9.700e-9
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   34 HSCPYDGCGKTYPKKAKLDVHLRSHTGEKPFVC 132
            H CPY+ CGKTY K + L VHLRSH+GEKPF C
Sbjct:   57 HCCPYENCGKTYRKTSHLKVHLRSHSGEKPFKC 89
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BLAST of mRNA_M-pyrifera_M_contig125021.5076.1 vs. uniprot
Match: A0A0L0S0W8_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0S0W8_ALLM3)

HSP 1 Score: 59.7 bits (143), Expect = 2.670e-8
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   34 HSCPYDGCGKTYPKKAKLDVHLRSHTGEKPFVCGE 138
            + CPYDGCGK Y K   LD H+R+HTGEKPFVC E
Sbjct:   88 YRCPYDGCGKEYRKPCLLDDHIRTHTGEKPFVCPE 122
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BLAST of mRNA_M-pyrifera_M_contig125021.5076.1 vs. uniprot
Match: A0A5C3FFC0_PSEA2 (Related to Zinc finger protein n=1 Tax=Pseudozyma antarctica TaxID=84753 RepID=A0A5C3FFC0_PSEA2)

HSP 1 Score: 59.3 bits (142), Expect = 3.700e-8
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   34 HSCPYDGCGKTYPKKAKLDVHLRSHTGEKPFVC 132
            H CPY+GCGK+Y K  KL  H+RSHTGE+PFVC
Sbjct:   39 HRCPYEGCGKSYTKAFKLAQHVRSHTGERPFVC 71
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BLAST of mRNA_M-pyrifera_M_contig125021.5076.1 vs. uniprot
Match: M9MED2_PSEA3 (FOG: Zn-finger n=2 Tax=Moesziomyces TaxID=63261 RepID=M9MED2_PSEA3)

HSP 1 Score: 57.4 bits (137), Expect = 1.760e-7
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   34 HSCPYDGCGKTYPKKAKLDVHLRSHTGEKPFV 129
            H CPY+GCGK+Y K +KL  H+RSHTGE+PFV
Sbjct:   37 HRCPYEGCGKSYTKASKLAQHIRSHTGERPFV 68
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BLAST of mRNA_M-pyrifera_M_contig125021.5076.1 vs. uniprot
Match: A0A4U7KZ48_9BASI (Uncharacterized protein n=1 Tax=Sporisorium graminicola TaxID=280036 RepID=A0A4U7KZ48_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 1.760e-7
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 SRKQKAQHSCPYDGCGKTYPKKAKLDVHLRSHTGEKPFVC 132
            SR     H CP++GC K+Y K +KL  H+RSHTGE+PFVC
Sbjct:    8 SRPDGPSHPCPFEGCNKSYTKASKLAQHIRSHTGERPFVC 47
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BLAST of mRNA_M-pyrifera_M_contig125021.5076.1 vs. uniprot
Match: A0A504ZB88_FASGI (Zinc finger protein n=3 Tax=Fasciola TaxID=6191 RepID=A0A504ZB88_FASGI)

HSP 1 Score: 57.4 bits (137), Expect = 1.780e-7
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:   31 QHSCPYDGCGKTYPKKAKLDVHLRSHTGEKPFVCGE 138
            +H CPY  CGK Y K  KL  HLRSHTGE+P+VC E
Sbjct:  522 RHPCPYSNCGKAYAKLNKLKEHLRSHTGERPYVCRE 557
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BLAST of mRNA_M-pyrifera_M_contig125021.5076.1 vs. uniprot
Match: A0A2P6NXN1_9EUKA (Specific RNA polymerase II transcription factor n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXN1_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 1.810e-7
Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   31 QHSCPYDGCGKTYPKKAKLDVHLRSHTGEKPFVCGE 138
            +H C  +GCGK++ ++A L++HLR+HTGEKPF+C E
Sbjct:   91 KHHCDVEGCGKSFVRRAHLEIHLRTHTGEKPFICPE 126
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BLAST of mRNA_M-pyrifera_M_contig125021.5076.1 vs. uniprot
Match: A0A5C3DQQ9_9BASI (Related to Zinc finger protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3DQQ9_9BASI)

HSP 1 Score: 57.0 bits (136), Expect = 2.410e-7
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   13 SRKQKAQHSCPYDGCGKTYPKKAKLDVHLRSHTGEKPFVC 132
            SR     H CPY GC K+Y K +KL  H+RSHTGE+PFVC
Sbjct:   30 SRPNDGLHRCPYAGCSKSYTKASKLAQHVRSHTGERPFVC 69
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BLAST of mRNA_M-pyrifera_M_contig125021.5076.1 vs. uniprot
Match: A0A553NY11_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553NY11_TIGCA)

HSP 1 Score: 56.6 bits (135), Expect = 2.880e-7
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   34 HSCPYDGCGKTYPKKAKLDVHLRSHTGEKPFVC 132
            HSCP +GC KTY K + L  HLR+HTGEKP+VC
Sbjct:  239 HSCPTEGCPKTYTKSSHLKAHLRTHTGEKPYVC 271
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BLAST of mRNA_M-pyrifera_M_contig125021.5076.1 vs. uniprot
Match: A0A5C3DNZ7_9BASI (Related to Zinc finger protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3DNZ7_9BASI)

HSP 1 Score: 56.6 bits (135), Expect = 3.290e-7
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   34 HSCPYDGCGKTYPKKAKLDVHLRSHTGEKPFVC 132
            H CPY GC K+Y K +KL  H+RSHTGE+PFVC
Sbjct:   37 HRCPYAGCSKSYTKASKLAQHVRSHTGERPFVC 69
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125021.5076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3Q0INF9_DIACI9.700e-969.70Krueppel-like factor 16 n=1 Tax=Diaphorina citri T... [more]
A0A0L0S0W8_ALLM32.670e-868.57Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]
A0A5C3FFC0_PSEA23.700e-869.70Related to Zinc finger protein n=1 Tax=Pseudozyma ... [more]
M9MED2_PSEA31.760e-768.75FOG: Zn-finger n=2 Tax=Moesziomyces TaxID=63261 Re... [more]
A0A4U7KZ48_9BASI1.760e-757.50Uncharacterized protein n=1 Tax=Sporisorium gramin... [more]
A0A504ZB88_FASGI1.780e-763.89Zinc finger protein n=3 Tax=Fasciola TaxID=6191 Re... [more]
A0A2P6NXN1_9EUKA1.810e-755.56Specific RNA polymerase II transcription factor n=... [more]
A0A5C3DQQ9_9BASI2.410e-760.00Related to Zinc finger protein n=1 Tax=Ustilago tr... [more]
A0A553NY11_TIGCA2.880e-766.67Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A0A5C3DNZ7_9BASI3.290e-766.67Related to Zinc finger protein n=1 Tax=Ustilago tr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125021contigM-pyrifera_M_contig125021:38..489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.693349-CDS-M-pyrifera_M_contig125021:37..1541622815766.693349-CDS-M-pyrifera_M_contig125021:37..154Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125021 38..154 +
1692277559.611366-CDS-M-pyrifera_M_contig125021:37..1541692277559.611366-CDS-M-pyrifera_M_contig125021:37..154Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125021 38..154 +
1622815766.7035077-CDS-M-pyrifera_M_contig125021:315..4891622815766.7035077-CDS-M-pyrifera_M_contig125021:315..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125021 316..489 +
1692277559.6197643-CDS-M-pyrifera_M_contig125021:315..4891692277559.6197643-CDS-M-pyrifera_M_contig125021:315..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125021 316..489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125021.5076.1prot_M-pyrifera_M_contig125021.5076.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125021 38..489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125021.5076.1

>prot_M-pyrifera_M_contig125021.5076.1 ID=prot_M-pyrifera_M_contig125021.5076.1|Name=mRNA_M-pyrifera_M_contig125021.5076.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MATKSRKQKAQHSCPYDGCGKTYPKKAKLDVHLRSHTGEKPFVCGEAGCG
KSYARQDHLNRHVQSHSSVKPHHCSHTGCDKSFGTRQHLTRHMKLHD
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mRNA from alignment at M-pyrifera_M_contig125021:38..489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125021.5076.1 ID=mRNA_M-pyrifera_M_contig125021.5076.1|Name=mRNA_M-pyrifera_M_contig125021.5076.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=452bp|location=Sequence derived from alignment at M-pyrifera_M_contig125021:38..489+ (Macrocystis pyrifera P11B4 male)
ATGGCGACAAAGAGCCGCAAACAGAAGGCGCAGCACTCATGCCCCTACGA
TGGGTGCGGGAAGACGTACCCCAAGAAGGCCAAGCTCGACGTGCATCTGA
GGAGCCACACAGGCGAAGTACGCCAAGCCCCTGCCTGTGGTATACGCAAG
TCCACAAGCCTAAGGCTATGCTCTTTCTCGCCTCTGTGTCTCTTAATTGC
TCGCGTGCTCCCATGCGCTGCTGGCATGCAGACGATCTTCCAATGCACGA
TTGGACTCGGTGCTGACTAGTGTCACAGAAGCCGTTTGTGTGTGGAGAAG
CAGGCTGTGGGAAGAGCTATGCGCGGCAAGACCACCTCAACCGCCACGTG
CAGTCACACAGCTCTGTCAAACCACACCACTGCAGCCACACAGGCTGCGA
CAAGAGTTTTGGAACGAGGCAGCACCTCACCAGGCACATGAAGCTGCATG
AT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125021:38..489+

>mRNA_M-pyrifera_M_contig125021.5076.1 ID=mRNA_M-pyrifera_M_contig125021.5076.1|Name=mRNA_M-pyrifera_M_contig125021.5076.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig125021:38..489+ (Macrocystis pyrifera P11B4 male)
ATGGCGACAAAGAGCCGCAAACAGAAGGCGCAGCACTCATGCCCCTACGA
TGGGTGCGGGAAGACGTACCCCAAGAAGGCCAAGCTCGACGTGCATCTGA
GGAGCCACACAGGCGAAATGGCGACAAAGAGCCGCAAACAGAAGGCGCAG
CACTCATGCCCCTACGATGGGTGCGGGAAGACGTACCCCAAGAAGGCCAA
GCTCGACGTGCATCTGAGGAGCCACACAGGCGAAAAGCCGTTTGTGTGTG
GAGAAGCAGGCTGTGGGAAGAGCTATGCGCGGCAAGACCACCTCAACCGC
CACGTGCAGTCACACAGCTCTGTCAAACCACACCACTGCAGCCACACAGG
CTGCGACAAGAGTTTTGGAACGAGGCAGCACCTCACCAGGCACATGAAGC
TGCATGATAAGCCGTTTGTGTGTGGAGAAGCAGGCTGTGGGAAGAGCTAT
GCGCGGCAAGACCACCTCAACCGCCACGTGCAGTCACACAGCTCTGTCAA
ACCACACCACTGCAGCCACACAGGCTGCGACAAGAGTTTTGGAACGAGGC
AGCACCTCACCAGGCACATGAAGCTGCATGAT
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