mRNA_M-pyrifera_M_contig125.5073.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125.5073.1
Unique NamemRNA_M-pyrifera_M_contig125.5073.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125.5073.1 vs. uniprot
Match: A0A6H5KBV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBV3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.640e-24
Identity = 59/128 (46.09%), Postives = 79/128 (61.72%), Query Frame = 2 
Query:  188 ECYRILLNGRSVSQTAGSNGGVPSATGGMCRHAEVALQLLETGMMKDAEPVSFSE-SACAYDDFKDYVAQAVERRLLSDEDAATMFKMVTEAENNGVWFLVKLHGWGYAVLGVRSRTCELDWAHVKID 568
            EC R+LL+ RSVSQTAG+N GV SATG  C HA  +L+ L    + DA P+ F   + C Y      ++ A  +  LS+ +   +  M  EA++ GV+ +V+L  WGYAV   RSRTCELDWAHVK +
Sbjct:  236 ECKRMLLHQRSVSQTAGANAGVQSATGASCEHATASLETLGKNTVVDATPIFFDGINGCPYAGLTACISPARAKAFLSEVEETLLVGMGAEAKDIGVYPVVQLGEWGYAVSERRSRTCELDWAHVKYE 363
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BLAST of mRNA_M-pyrifera_M_contig125.5073.1 vs. uniprot
Match: D7FR12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR12_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.520e-20
Identity = 61/155 (39.35%), Postives = 85/155 (54.84%), Query Frame = 2 
Query:  170 SSCSRMECYRILLNGRSVSQTAGSNGGVPSATGGMCRHAEVALQLLETGMMKDAEPVSFSESACAYDDFKDYVAQAVERRLLSDEDAATMFKMVTEAENNGVWFLVKLHGWGYAVLGVRSRTCELDWAHVKIDNPGIAGSSRRITPGRGLMCKVS 634
            SSCSR +C  +     +  QTAGS+GGV SA GG+C+HA+ AL+ +    +KDA  V        +D  K++VA A     LS  +   +  MV  AE +GVW + +     + V   R+RT E D+A VK D      SSRR+TP +  MC+VS
Sbjct:   99 SSCSRTQCQGLRAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVK--GDGWDWDAAKEHVATAKSDGHLSVVEHTVIMTMVERAEGSGVWPVYETEPNHFVVRDDRTRTSEHDYACVKYDTVEPGKSSRRLTPPKNFMCRVS 251
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BLAST of mRNA_M-pyrifera_M_contig125.5073.1 vs. uniprot
Match: A0A6H5JW51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW51_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.000e-19
Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 2 
Query:  266 GGMCRHAEVALQLLETGMMKDAEPVSFSE-SACAYDDFKDYVAQAVERRLLSDEDAATMFKMVTEAENNGVWFLVKLHGWGYAVLGVRSRTCELDWAHVKIDN------PGIAGSSRRITPGRGLMCK 628
            G +C HA  +L+ L+   + DA P+ F+  + C Y      ++QA  +  LS+     +  MV EA++ GV+ +V+L  WGYAV   RSRTCELDWAHVK D            +SRRIT  RGLMCK
Sbjct:  179 GAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKTFLSEVKETLLVGMVAEAKDVGVYQVVQLGEWGYAVSERRSRTCELDWAHVKYDKGDGXXXXXXXXASRRITAARGLMCK 306
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BLAST of mRNA_M-pyrifera_M_contig125.5073.1 vs. uniprot
Match: A0A6H5JPP3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 6.910e-16
Identity = 55/149 (36.91%), Postives = 82/149 (55.03%), Query Frame = 2 
Query:  200 ILLNGRSVSQTAGSNGGVPSATGGMCRHAEVALQLLETGMMKDAEPVSFSE-SACAYDDFKDYVAQAVERRLLSDEDAATMFKMVTEAENNGVWFLVKLHGWGYAVLGVRSRTCELDWAHVKIDNPGIAGSSRRITPGRGLMCKVSNLG 643
            + L  RSVS+TAG+N GV SATGG+C HA  +L+ L+   + +A P+ F+  + C +      ++QA  +  LS+ +   +  MV EA++ GV+ +V+L  WGYAV   RS                   +SR+IT  RGLMCK +  G
Sbjct:    1 MRLRQRSVSRTAGANAGVQSATGGICEHAAASLEALDKNTVVNATPIFFNGINGCPHAGLTACISQARAKAFLSEVEETLLLGMVAEAKDVGVYPVVQLSKWGYAVSERRSDGKXXXXXXX---------ASRKITAARGLMCKANRGG 140
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BLAST of mRNA_M-pyrifera_M_contig125.5073.1 vs. uniprot
Match: A0A6H5JWX4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.500e-14
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 2 
Query:  200 ILLNGRSVSQTAGSNGGVPSATGGMCRHAEVALQLLETGMMKDAEPVSFSE-SACAYDDFKDYVAQAVERRLLSDEDAATMFKMVTEAENNGVWFLVKLHGWGYAV 514
            +LL+ RSVSQTAG+N GV SATG +C HA  +L+ L+   + DA P+ F+  + C Y      ++QA  +  LS+ +   +  MV EA++ GV+ +V+L  WGYAV
Sbjct:    1 MLLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYAV 106
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BLAST of mRNA_M-pyrifera_M_contig125.5073.1 vs. uniprot
Match: D7G6G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G0_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.600e-11
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 2 
Query:  446 MVTEAENNGVWFLVKLHGWGYAVLGVRSRTCELDWAHVKIDN------PGIAGSSRRITPGRGLMCK 628
            MV EA++ GV  +V+L  WGYAV   RSRTCELDWAHVK D            +SRRIT  RGL+CK
Sbjct:    1 MVAEAKDIGVHPVVQLGEWGYAVSERRSRTCELDWAHVKYDKGDGXXXXXXXXASRRITAARGLVCK 67
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125.5073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KBV3_9PHAE5.640e-2446.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR12_ECTSI1.520e-2039.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW51_9PHAE1.000e-1942.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPP3_9PHAE6.910e-1636.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JWX4_9PHAE2.500e-1442.45CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G6G0_ECTSI2.600e-1155.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125contigM-pyrifera_M_contig125:49881..51119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size664
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125.5073.1prot_M-pyrifera_M_contig125.5073.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125 49881..50935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.5613906-CDS-M-pyrifera_M_contig125:49880..503461622815766.5613906-CDS-M-pyrifera_M_contig125:49880..50346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125 49881..50346 -
1692277559.5439436-CDS-M-pyrifera_M_contig125:49880..503461692277559.5439436-CDS-M-pyrifera_M_contig125:49880..50346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125 49881..50346 -
1622815766.5764897-CDS-M-pyrifera_M_contig125:50921..509351622815766.5764897-CDS-M-pyrifera_M_contig125:50921..50935Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125 50922..50935 -
1692277559.5553765-CDS-M-pyrifera_M_contig125:50921..509351692277559.5553765-CDS-M-pyrifera_M_contig125:50921..50935Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125 50922..50935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.5901444-UTR-M-pyrifera_M_contig125:50935..511191622815766.5901444-UTR-M-pyrifera_M_contig125:50935..51119Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125 50936..51119 -
1692277559.565585-UTR-M-pyrifera_M_contig125:50935..511191692277559.565585-UTR-M-pyrifera_M_contig125:50935..51119Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125 50936..51119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125.5073.1

>prot_M-pyrifera_M_contig125.5073.1 ID=prot_M-pyrifera_M_contig125.5073.1|Name=mRNA_M-pyrifera_M_contig125.5073.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
MECYRILLNGRSVSQTAGSNGGVPSATGGMCRHAEVALQLLETGMMKDAE
PVSFSESACAYDDFKDYVAQAVERRLLSDEDAATMFKMVTEAENNGVWFL
VKLHGWGYAVLGVRSRTCELDWAHVKIDNPGIAGSSRRITPGRGLMCKVS
NLGCMYVIA*
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mRNA from alignment at M-pyrifera_M_contig125:49881..51119-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125.5073.1 ID=mRNA_M-pyrifera_M_contig125.5073.1|Name=mRNA_M-pyrifera_M_contig125.5073.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at M-pyrifera_M_contig125:49881..51119- (Macrocystis pyrifera P11B4 male)
GCGCCCCGGATCGTTCCCCCGAGCGCCCTCCGCCCGCCAACAGCAAACAA
TGCCGTTGCGGGAAGCATAACCGTTTCGATGTGCATGTCGAGCACGCAGA
ATAGAGTTGTGACGACGGTGAACCCGAAGCCTCCAGCAACGTTGGCAAAA
CCAAGACCAGGAACCGCGAAGCAGCTGCTCTCGGATGGAGTGCTACAGGT
GCGTGACCCAAAGCGTTTTTGCCATTGGCATGGTAGGCGCAATACCTGGT
AGTCGTGGACTTCTTTGCAGGTGTGCTTCACTTTACGGTGTCCAAAATAC
TGCATGCAATTTAGTTGGAAGTGTTTGAGCATTACTTGAATACGGTAACA
TCCTCTGGGAACGGCCCGGGCGGCAAAGGACTTCAAATAGTGAATCCGCC
ACCTCGGGGTTCACACAGGTAGTGGGGGAATCTTTCTGGAAACAATGAAA
GAGAATGAAAACCGAGAAAAGTTTGTGCAAACACGTACCAGGTACCACAT
GTGTTTTGGTAGATTCCCAAACATGTTTTTTTTTGGGGGGGAGCGTTCAG
AGAGGATCGGACGGCATGACTCGGAAGTGAGTACAGCATCATTGGTGTAC
CTCATTCGTGATTGTCACCATGGACCCTGAATCACGATGTGCATGTATAA
ACTGAAAATTGAGGATGTTTGATGTCACCCCGATGAAATGTACGCTACAT
AAGCCATCACTCTTTGACCCTGACCTAGTTTGGTGTTTTCGTTGCAAACC
TCTTGGTTGTGTCCGTTGGACAGAATTCTACTCAATGGCCGGTCTGTGAG
CCAAACAGCAGGATCAAATGGCGGTGTTCCGAGTGCCACCGGCGGCATGT
GCAGACACGCCGAAGTCGCCTTGCAGCTTCTTGAGACCGGGATGATGAAA
GACGCAGAGCCGGTCTCGTTTAGTGAGAGCGCTTGCGCGTATGACGATTT
TAAGGATTATGTGGCTCAAGCTGTCGAGAGACGACTCCTGTCCGACGAAG
ACGCAGCCACAATGTTCAAGATGGTGACGGAGGCAGAAAATAATGGTGTG
TGGTTTCTCGTGAAATTGCACGGGTGGGGATACGCAGTGTTAGGGGTGCG
GAGTCGCACGTGCGAGCTAGACTGGGCGCATGTGAAAATCGACAACCCCG
GGATAGCTGGGTCATCGAGAAGGATCACTCCTGGCAGGGGCTTGATGTGC
AAAGTGAGTAATTTGGGTTGTATGTACGTGATTGCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125:49881..51119-

>mRNA_M-pyrifera_M_contig125.5073.1 ID=mRNA_M-pyrifera_M_contig125.5073.1|Name=mRNA_M-pyrifera_M_contig125.5073.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig125:49881..51119- (Macrocystis pyrifera P11B4 male)
ATGGAGTGCTACAGATGGAGTGCTACAGAATTCTACTCAATGGCCGGTCT
GTGAGCCAAACAGCAGGATCAAATGGCGGTGTTCCGAGTGCCACCGGCGG
CATGTGCAGACACGCCGAAGTCGCCTTGCAGCTTCTTGAGACCGGGATGA
TGAAAGACGCAGAGCCGGTCTCGTTTAGTGAGAGCGCTTGCGCGTATGAC
GATTTTAAGGATTATGTGGCTCAAGCTGTCGAGAGACGACTCCTGTCCGA
CGAAGACGCAGCCACAATGTTCAAGATGGTGACGGAGGCAGAAAATAATG
GTGTGTGGTTTCTCGTGAAATTGCACGGGTGGGGATACGCAGTGTTAGGG
GTGCGGAGTCGCACGTGCGAGCTAGACTGGGCGCATGTGAAAATCGACAA
CCCCGGGATAGCTGGGTCATCGAGAAGGATCACTCCTGGCAGGGGCTTGA
TGTGCAAAGTGAGTAATTTGGGTTGTATGTACGTGATTGCATGAAATTCT
ACTCAATGGCCGGTCTGTGAGCCAAACAGCAGGATCAAATGGCGGTGTTC
CGAGTGCCACCGGCGGCATGTGCAGACACGCCGAAGTCGCCTTGCAGCTT
CTTGAGACCGGGATGATGAAAGACGCAGAGCCGGTCTCGTTTAGTGAGAG
CGCTTGCGCGTATGACGATTTTAAGGATTATGTGGCTCAAGCTGTCGAGA
GACGACTCCTGTCCGACGAAGACGCAGCCACAATGTTCAAGATGGTGACG
GAGGCAGAAAATAATGGTGTGTGGTTTCTCGTGAAATTGCACGGGTGGGG
ATACGCAGTGTTAGGGGTGCGGAGTCGCACGTGCGAGCTAGACTGGGCGC
ATGTGAAAATCGACAACCCCGGGATAGCTGGGTCATCGAGAAGGATCACT
CCTGGCAGGGGCTTGATGTGCAAAGTGAGTAATTTGGGTTGTATGTACGT
GATTGCATGA
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