mRNA_M-pyrifera_M_contig12499.5070.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12499.5070.1
Unique NamemRNA_M-pyrifera_M_contig12499.5070.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12499.5070.1 vs. uniprot
Match: D7FUH1_ECTSI (Putative methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH1_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 8.820e-13
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 PDSAALLNNLGSALLTLGDVEEGLPLLQKAFELDPTRHDPLVNVGAHLQEEGDLDGA 171
            P +   LNNLG ALL LG  +EGL +L+K+FELDP   D LVN+G H QE+GDLD A
Sbjct:  400 PKNCVALNNLGVALLALGQQDEGLSMLEKSFELDPFEPDVLVNLGIHWQEDGDLDRA 456
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12499.5070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUH1_ECTSI8.820e-1359.65Putative methyltransferase n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12499contigM-pyrifera_M_contig12499:1009..1179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue5e-10
Seed eggNOG ortholog2880.D7FUH1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-03_000210.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815766.4423072-CDS-M-pyrifera_M_contig12499:1008..11791622815766.4423072-CDS-M-pyrifera_M_contig12499:1008..1179Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12499 1009..1179 +
1692277559.507362-CDS-M-pyrifera_M_contig12499:1008..11791692277559.507362-CDS-M-pyrifera_M_contig12499:1008..1179Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12499 1009..1179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12499.5070.1prot_M-pyrifera_M_contig12499.5070.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12499 1009..1179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12499.5070.1

>prot_M-pyrifera_M_contig12499.5070.1 ID=prot_M-pyrifera_M_contig12499.5070.1|Name=mRNA_M-pyrifera_M_contig12499.5070.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
PDSAALLNNLGSALLTLGDVEEGLPLLQKAFELDPTRHDPLVNVGAHLQE
EGDLDGA
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mRNA from alignment at M-pyrifera_M_contig12499:1009..1179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12499.5070.1 ID=mRNA_M-pyrifera_M_contig12499.5070.1|Name=mRNA_M-pyrifera_M_contig12499.5070.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig12499:1009..1179+ (Macrocystis pyrifera P11B4 male)
CCCGATAGCGCAGCCCTTCTAAACAACCTGGGGTCGGCTCTGCTCACCCT
GGGCGATGTCGAAGAGGGTCTCCCGCTGCTGCAGAAGGCGTTTGAGCTAG
ACCCCACGCGGCACGACCCGCTGGTCAACGTCGGCGCACACCTACAGGAA
GAGGGGGATCTCGATGGTGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12499:1009..1179+

>mRNA_M-pyrifera_M_contig12499.5070.1 ID=mRNA_M-pyrifera_M_contig12499.5070.1|Name=mRNA_M-pyrifera_M_contig12499.5070.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig12499:1009..1179+ (Macrocystis pyrifera P11B4 male)
CCCGATAGCGCAGCCCTTCTAAACAACCTGGGGTCGGCTCTGCTCACCCT
GGGCGATGTCGAAGAGGGTCTCCCGCTGCTGCAGAAGGCGTTTGAGCTAG
ACCCCACGCGGCACGACCCGCTGGTCAACGTCGGCGCACACCTACAGGAA
GAGGGGGATCTCGATGGTGCTCCCGATAGCGCAGCCCTTCTAAACAACCT
GGGGTCGGCTCTGCTCACCCTGGGCGATGTCGAAGAGGGTCTCCCGCTGC
TGCAGAAGGCGTTTGAGCTAGACCCCACGCGGCACGACCCGCTGGTCAAC
GTCGGCGCACACCTACAGGAAGAGGGGGATCTCGATGGTGCT
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