mRNA_M-pyrifera_M_contig124892.5059.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124892.5059.1
Unique NamemRNA_M-pyrifera_M_contig124892.5059.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A6I6AD92_9PLAN (Uncharacterized protein n=7 Tax=Bacteria TaxID=2 RepID=A0A6I6AD92_9PLAN)

HSP 1 Score: 263 bits (673), Expect = 4.590e-80
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 1 
Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTINPDQLPPNAGWMRSNSLKLIQH+IEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP
Sbjct:  899 LDTINPDQLPPNAGWMRSNSLKLIQHEIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 1029
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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A517ZZE0_9PLAN (Uncharacterized protein n=6 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517ZZE0_9PLAN)

HSP 1 Score: 248 bits (633), Expect = 2.100e-74
Identity = 120/131 (91.60%), Postives = 128/131 (97.71%), Query Frame = 1 
Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTINPDQLPPNAGWMRSNSLKLIQH+IEGQKKK+ISMLAKGNAELEGNALVKNKK P+NQSFIARADTISYD+SKDLYMMRSFGNRKATIRRYSRTGKT + P++AQQIEFAPSYDRVTLHGVTG+QGLP
Sbjct:  898 LDTINPDQLPPNAGWMRSNSLKLIQHEIEGQKKKYISMLAKGNAELEGNALVKNKKAPSNQSFIARADTISYDQSKDLYMMRSFGNRKATIRRYSRTGKTSTTPSEAQQIEFAPSYDRVTLHGVTGIQGLP 1028
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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A518I4W7_9PLAN (OstA-like protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I4W7_9PLAN)

HSP 1 Score: 221 bits (563), Expect = 1.620e-64
Identity = 108/131 (82.44%), Postives = 122/131 (93.13%), Query Frame = 1 
Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTI+PD+LPPNAGWMRSNSLKLIQH+I GQKKK+ISMLAKGNAELEGNALVKNK+TPTNQSF A ADTIS+DESKDLYM+RSFGNRKAT+RR+SR G  P+  + AQQIEFAP++DRVTLHGVTG+QGLP
Sbjct:  949 LDTIDPDKLPPNAGWMRSNSLKLIQHEISGQKKKYISMLAKGNAELEGNALVKNKRTPTNQSFSASADTISFDESKDLYMLRSFGNRKATLRRFSRVGSDPTQ-SVAQQIEFAPAHDRVTLHGVTGIQGLP 1078
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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A517R8C3_9PLAN (OstA-like protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517R8C3_9PLAN)

HSP 1 Score: 221 bits (563), Expect = 1.650e-64
Identity = 108/131 (82.44%), Postives = 122/131 (93.13%), Query Frame = 1 
Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTI+PD+LPPNAGWMRSNSLKLIQH+I GQKKK+ISMLAKGNAELEGNAL+KNK+TPTNQSF A ADTIS+DESKDLYMMRSFGNRKATIRR+SR G  P+  + AQQIEF+P++DRVTLHGVTG+QGLP
Sbjct:  953 LDTIDPDKLPPNAGWMRSNSLKLIQHEISGQKKKYISMLAKGNAELEGNALIKNKRTPTNQSFSASADTISFDESKDLYMMRSFGNRKATIRRFSRVGGVPNQ-SVAQQIEFSPTHDRVTLHGVTGIQGLP 1082
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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A517W4I3_9PLAN (OstA-like protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W4I3_9PLAN)

HSP 1 Score: 216 bits (549), Expect = 1.400e-62
Identity = 105/131 (80.15%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTINP++LPP AGWMRSNSLKLIQH+I GQKKKFIS+LAKGNAELEGN L+KNK TP NQSFIARADTIS+DESKDLY MRSFGNRKAT+RRYS+ G  P+  N++Q+IEFAP+YDRVTLHGVT +QGLP
Sbjct:  956 LDTINPNKLPPQAGWMRSNSLKLIQHEINGQKKKFISVLAKGNAELEGNTLIKNKSTPMNQSFIARADTISFDESKDLYTMRSFGNRKATLRRYSKGGNGPTM-NESQEIEFAPTYDRVTLHGVTVIQGLP 1085
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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A517X3G9_9PLAN (OstA-like protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X3G9_9PLAN)

HSP 1 Score: 215 bits (547), Expect = 2.640e-62
Identity = 104/131 (79.39%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTINP++LPP  GWMRSNSLKLIQH+I GQKKKFIS+LAKGNAELEGN L+KNK+TP NQSFIARADTIS+DESKDLY MRSFGNRKAT+RRYS+ G  P+  N++Q+IEFAP+YDRVTLHGVT +QGLP
Sbjct:  957 LDTINPNKLPPQTGWMRSNSLKLIQHEINGQKKKFISVLAKGNAELEGNTLIKNKRTPMNQSFIARADTISFDESKDLYTMRSFGNRKATLRRYSKGGNGPTM-NESQEIEFAPTYDRVTLHGVTVIQGLP 1086
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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A355G6T5_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355G6T5_9PLAN)

HSP 1 Score: 192 bits (487), Expect = 2.550e-56
Identity = 96/131 (73.28%), Postives = 114/131 (87.02%), Query Frame = 1 
Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTI+ D+LPP AG MRSNSLKLIQHDIEGQKKK ISMLAKGNAE+EGN L+K+K+TPT+Q F A ADTIS+DESKD YM+RSFGNRKAT+RR+S +G+ P     +QQI+F+PS+D+VTLHGVT LQGLP
Sbjct:  387 LDTIDRDKLPPGAGSMRSNSLKLIQHDIEGQKKKSISMLAKGNAEVEGNTLIKSKQTPTSQEFSASADTISFDESKDQYMLRSFGNRKATLRRFSHSGQNPQRV-VSQQIDFSPSHDQVTLHGVTELQGLP 516
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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A3D3RH75_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3RH75_9PLAN)

HSP 1 Score: 196 bits (499), Expect = 3.140e-56
Identity = 97/131 (74.05%), Postives = 116/131 (88.55%), Query Frame = 1 
Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTI+PD++PP AG MRSNSLKLIQHDI+GQKKKFISMLAKGNAE+EGN L+KNK+TPT+Q F A ADTIS+DESKD Y +RSFGNRKAT+RRYS   ++P+  + +QQIEF+PS+DRVTLHGVT +QGLP
Sbjct:  696 LDTIDPDRMPPGAGSMRSNSLKLIQHDIDGQKKKFISMLAKGNAEVEGNTLIKNKQTPTSQEFSASADTISFDESKDQYTLRSFGNRKATLRRYSPFRQSPTR-SVSQQIEFSPSHDRVTLHGVTEIQGLP 825
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BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A6CDR8_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6CDR8_9PLAN)

HSP 1 Score: 196 bits (499), Expect = 8.790e-56
Identity = 97/131 (74.05%), Postives = 116/131 (88.55%), Query Frame = 1 
Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTI+PD++PP AG MRSNSLKLIQHDI+GQKKKFISMLAKGNAE+EGN L+KNK+TPT+Q F A ADTIS+DESKD Y +RSFGNRKAT+RRYS   ++P+  + +QQIEF+PS+DRVTLHGVT +QGLP
Sbjct:  918 LDTIDPDRMPPGAGSMRSNSLKLIQHDIDGQKKKFISMLAKGNAEVEGNTLIKNKQTPTSQEFSASADTISFDESKDQYTLRSFGNRKATLRRYSPFRQSPTR-SVSQQIEFSPSHDRVTLHGVTEIQGLP 1047
[Close]
BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Match: A0A2E2C7J3_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C7J3_9PLAN)

HSP 1 Score: 193 bits (491), Expect = 1.080e-54
Identity = 97/131 (74.05%), Postives = 114/131 (87.02%), Query Frame = 1 
Query:    1 LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNALVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKTPSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP 393
            LDTI+ D+LPP AG MRSNSLKLIQHDIEGQKKK ISMLAKGNAE+EGN L+K+K+TPT+Q F A ADTIS+DESKD YM+RSFGNRKAT+RR+S +G+ P     +QQI+F+PS+DRVTLHGVT LQGLP
Sbjct:  919 LDTIDRDKLPPGAGSMRSNSLKLIQHDIEGQKKKSISMLAKGNAEVEGNTLIKSKQTPTSQEFSASADTISFDESKDQYMLRSFGNRKATLRRFSHSGQNPQRV-VSQQIDFSPSHDRVTLHGVTELQGLP 1048
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124892.5059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6AD92_9PLAN4.590e-8099.24Uncharacterized protein n=7 Tax=Bacteria TaxID=2 R... [more]
A0A517ZZE0_9PLAN2.100e-7491.60Uncharacterized protein n=6 Tax=Gimesia panareensi... [more]
A0A518I4W7_9PLAN1.620e-6482.44OstA-like protein n=1 Tax=Gimesia fumaroli TaxID=2... [more]
A0A517R8C3_9PLAN1.650e-6482.44OstA-like protein n=1 Tax=Gimesia alba TaxID=25279... [more]
A0A517W4I3_9PLAN1.400e-6280.15OstA-like protein n=1 Tax=Gimesia aquarii TaxID=25... [more]
A0A517X3G9_9PLAN2.640e-6279.39OstA-like protein n=1 Tax=Gimesia aquarii TaxID=25... [more]
A0A355G6T5_9PLAN2.550e-5673.28Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A3D3RH75_9PLAN3.140e-5674.05Uncharacterized protein (Fragment) n=1 Tax=Gimesia... [more]
A6CDR8_9PLAN8.790e-5674.05Uncharacterized protein n=6 Tax=Planctomycetaceae ... [more]
A0A2E2C7J3_9PLAN1.080e-5474.05Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124892contigM-pyrifera_M_contig124892:120..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score196.8
Seed ortholog evalue6.3e-48
Seed eggNOG ortholog344747.PM8797T_08449
Hectar predicted targeting categoryother localisation
EggNOG OGs2C710@1,2IZYQ@203682,32RI4@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.8030417-CDS-M-pyrifera_M_contig124892:119..5151622815765.8030417-CDS-M-pyrifera_M_contig124892:119..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124892 120..515 -
1692277559.1614106-CDS-M-pyrifera_M_contig124892:119..5151692277559.1614106-CDS-M-pyrifera_M_contig124892:119..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124892 120..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124892.5059.1prot_M-pyrifera_M_contig124892.5059.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124892 120..515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124892.5059.1

>prot_M-pyrifera_M_contig124892.5059.1 ID=prot_M-pyrifera_M_contig124892.5059.1|Name=mRNA_M-pyrifera_M_contig124892.5059.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
LDTINPDQLPPNAGWMRSNSLKLIQHDIEGQKKKFISMLAKGNAELEGNA
LVKNKKTPTNQSFIARADTISYDESKDLYMMRSFGNRKATIRRYSRTGKT
PSAPNQAQQIEFAPSYDRVTLHGVTGLQGLP*
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mRNA from alignment at M-pyrifera_M_contig124892:120..515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124892.5059.1 ID=mRNA_M-pyrifera_M_contig124892.5059.1|Name=mRNA_M-pyrifera_M_contig124892.5059.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig124892:120..515- (Macrocystis pyrifera P11B4 male)
CTGGATACAATCAACCCCGATCAGCTGCCTCCCAATGCAGGCTGGATGCG
GAGCAACAGTCTGAAACTGATTCAACACGACATTGAAGGACAGAAGAAAA
AATTCATCTCGATGCTGGCCAAGGGGAACGCCGAACTCGAAGGCAACGCC
CTGGTCAAAAACAAGAAGACACCGACCAACCAGTCGTTCATTGCCCGCGC
GGATACGATCAGCTATGACGAGTCCAAAGACCTCTACATGATGCGTTCGT
TTGGCAATCGCAAAGCCACGATCCGCCGCTATTCGCGTACCGGCAAAACT
CCCAGTGCGCCCAACCAGGCCCAGCAGATTGAATTCGCCCCCTCTTACGA
TCGCGTCACATTACACGGCGTAACCGGGTTACAGGGACTTCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124892:120..515-

>mRNA_M-pyrifera_M_contig124892.5059.1 ID=mRNA_M-pyrifera_M_contig124892.5059.1|Name=mRNA_M-pyrifera_M_contig124892.5059.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig124892:120..515- (Macrocystis pyrifera P11B4 male)
CTGGATACAATCAACCCCGATCAGCTGCCTCCCAATGCAGGCTGGATGCG
GAGCAACAGTCTGAAACTGATTCAACACGACATTGAAGGACAGAAGAAAA
AATTCATCTCGATGCTGGCCAAGGGGAACGCCGAACTCGAAGGCAACGCC
CTGGTCAAAAACAAGAAGACACCGACCAACCAGTCGTTCATTGCCCGCGC
GGATACGATCAGCTATGACGAGTCCAAAGACCTCTACATGATGCGTTCGT
TTGGCAATCGCAAAGCCACGATCCGCCGCTATTCGCGTACCGGCAAAACT
CCCAGTGCGCCCAACCAGGCCCAGCAGATTGAATTCGCCCCCTCTTACGA
TCGCGTCACATTACACGGCGTAACCGGGTTACAGGGACTTCCCTGACTGG
ATACAATCAACCCCGATCAGCTGCCTCCCAATGCAGGCTGGATGCGGAGC
AACAGTCTGAAACTGATTCAACACGACATTGAAGGACAGAAGAAAAAATT
CATCTCGATGCTGGCCAAGGGGAACGCCGAACTCGAAGGCAACGCCCTGG
TCAAAAACAAGAAGACACCGACCAACCAGTCGTTCATTGCCCGCGCGGAT
ACGATCAGCTATGACGAGTCCAAAGACCTCTACATGATGCGTTCGTTTGG
CAATCGCAAAGCCACGATCCGCCGCTATTCGCGTACCGGCAAAACTCCCA
GTGCGCCCAACCAGGCCCAGCAGATTGAATTCGCCCCCTCTTACGATCGC
GTCACATTACACGGCGTAACCGGGTTACAGGGACTTCCCTGA
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