mRNA_M-pyrifera_M_contig124884.5056.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124884.5056.1
Unique NamemRNA_M-pyrifera_M_contig124884.5056.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124884.5056.1 vs. uniprot
Match: C3XYG7_BRAFL (SRCR domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XYG7_BRAFL)

HSP 1 Score: 57.4 bits (137), Expect = 6.650e-10
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 DDIGCSGSEASIVDCPSGGWGVHNCAPSSESAGVVC 108
            DDI CSG+E S++DCPS GWGVHNC    E  GVVC
Sbjct:   40 DDIACSGTETSLIDCPSAGWGVHNCG-HGEDVGVVC 74
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BLAST of mRNA_M-pyrifera_M_contig124884.5056.1 vs. uniprot
Match: C3XYG9_BRAFL (SRCR domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XYG9_BRAFL)

HSP 1 Score: 57.4 bits (137), Expect = 1.140e-9
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 DDIGCSGSEASIVDCPSGGWGVHNCAPSSESAGVVC 108
            DD+ C+G+E S++DCPS GWGVHNC   SE  GVVC
Sbjct:   68 DDVACTGTETSLIDCPSAGWGVHNCG-HSEDVGVVC 102
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BLAST of mRNA_M-pyrifera_M_contig124884.5056.1 vs. uniprot
Match: UPI0013F26226 (deleted in malignant brain tumors 1 protein-like isoform X7 n=2 Tax=Chelonoidis abingdonii TaxID=106734 RepID=UPI0013F26226)

HSP 1 Score: 56.2 bits (134), Expect = 3.580e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 DDIGCSGSEASIVDCPSGGWGVHNCAPSSESAGVVC 108
            DD+ CSG+E+S+ +CPSGGWG+HNC   +E AGVVC
Sbjct:  616 DDVNCSGNESSLWECPSGGWGLHNCR-HNEDAGVVC 650
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BLAST of mRNA_M-pyrifera_M_contig124884.5056.1 vs. uniprot
Match: UPI0013F18262 (deleted in malignant brain tumors 1 protein-like isoform X8 n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=UPI0013F18262)

HSP 1 Score: 56.2 bits (134), Expect = 3.580e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 DDIGCSGSEASIVDCPSGGWGVHNCAPSSESAGVVC 108
            DD+ CSG+E+S+ +CPSGGWG+HNC   +E AGVVC
Sbjct:  616 DDVNCSGNESSLWECPSGGWGLHNCR-HNEDAGVVC 650
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BLAST of mRNA_M-pyrifera_M_contig124884.5056.1 vs. uniprot
Match: A0A8C5F1Y4_9SAUR (Uncharacterized protein n=1 Tax=Gopherus evgoodei TaxID=1825980 RepID=A0A8C5F1Y4_9SAUR)

HSP 1 Score: 56.2 bits (134), Expect = 3.590e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 DDIGCSGSEASIVDCPSGGWGVHNCAPSSESAGVVC 108
            DD+ CSG+E+S+ +CPSGGWG+HNC   +E AGVVC
Sbjct:   99 DDVNCSGNESSLWECPSGGWGLHNCR-HNEDAGVVC 133
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BLAST of mRNA_M-pyrifera_M_contig124884.5056.1 vs. uniprot
Match: A0A674INR7_TERCA (Uncharacterized protein n=2 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=A0A674INR7_TERCA)

HSP 1 Score: 56.2 bits (134), Expect = 3.590e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 DDIGCSGSEASIVDCPSGGWGVHNCAPSSESAGVVC 108
            DD+ CSG+E+S+ +CPSGGWG+HNC   +E AGVVC
Sbjct:  729 DDVNCSGNESSLWECPSGGWGLHNCR-HNEDAGVVC 763
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BLAST of mRNA_M-pyrifera_M_contig124884.5056.1 vs. uniprot
Match: A0A8C5F1Z8_9SAUR (Uncharacterized protein n=2 Tax=Gopherus evgoodei TaxID=1825980 RepID=A0A8C5F1Z8_9SAUR)

HSP 1 Score: 56.2 bits (134), Expect = 3.590e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 DDIGCSGSEASIVDCPSGGWGVHNCAPSSESAGVVC 108
            DD+ CSG+E+S+ +CPSGGWG+HNC   +E AGVVC
Sbjct:  195 DDVNCSGNESSLWECPSGGWGLHNCR-HNEDAGVVC 229
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BLAST of mRNA_M-pyrifera_M_contig124884.5056.1 vs. uniprot
Match: A0A8C3T8Z5_CHESE (Uncharacterized protein n=1 Tax=Chelydra serpentina TaxID=8475 RepID=A0A8C3T8Z5_CHESE)

HSP 1 Score: 55.8 bits (133), Expect = 4.910e-8
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 DDIGCSGSEASIVDCPSGGWGVHNCAPSSESAGVVC 108
            DD+ CSG+E+S+ +CPSGGWG+HNC   +E AGV+C
Sbjct:  359 DDVNCSGNESSLWECPSGGWGLHNCR-HNEDAGVIC 393
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BLAST of mRNA_M-pyrifera_M_contig124884.5056.1 vs. uniprot
Match: A0A8K0A2F1_BRALA (FGFR4 protein n=10 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A2F1_BRALA)

HSP 1 Score: 55.5 bits (132), Expect = 6.730e-8
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   13 CSGSEASIVDCPSGGWGVHNCAPSSESAGVVC 108
            C+G+EAS+ DCP GGW +HNC+  SESAGV C
Sbjct:  122 CAGTEASLSDCPHGGWNIHNCSKPSESAGVFC 153
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BLAST of mRNA_M-pyrifera_M_contig124884.5056.1 vs. uniprot
Match: A0A8B9TVE0_ANAPL (Uncharacterized protein n=7 Tax=Anas platyrhynchos TaxID=8839 RepID=A0A8B9TVE0_ANAPL)

HSP 1 Score: 54.7 bits (130), Expect = 1.070e-7
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 DDIGCSGSEASIVDCPSGGWGVHNCAPSSESAGVVC 108
            DD+ C+GSE+S+ +C S GWGVHNCA  SE AGVVC
Sbjct:  100 DDVQCTGSESSLFECRSSGWGVHNCA-HSEDAGVVC 134
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124884.5056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C3XYG7_BRAFL6.650e-1066.67SRCR domain-containing protein (Fragment) n=1 Tax=... [more]
C3XYG9_BRAFL1.140e-963.89SRCR domain-containing protein (Fragment) n=1 Tax=... [more]
UPI0013F262263.580e-863.89deleted in malignant brain tumors 1 protein-like i... [more]
UPI0013F182623.580e-863.89deleted in malignant brain tumors 1 protein-like i... [more]
A0A8C5F1Y4_9SAUR3.590e-863.89Uncharacterized protein n=1 Tax=Gopherus evgoodei ... [more]
A0A674INR7_TERCA3.590e-863.89Uncharacterized protein n=2 Tax=Terrapene carolina... [more]
A0A8C5F1Z8_9SAUR3.590e-863.89Uncharacterized protein n=2 Tax=Gopherus evgoodei ... [more]
A0A8C3T8Z5_CHESE4.910e-861.11Uncharacterized protein n=1 Tax=Chelydra serpentin... [more]
A0A8K0A2F1_BRALA6.730e-865.63FGFR4 protein n=10 Tax=Branchiostoma lanceolatum T... [more]
A0A8B9TVE0_ANAPL1.070e-766.67Uncharacterized protein n=7 Tax=Anas platyrhynchos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124884contigM-pyrifera_M_contig124884:408..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.7097344-CDS-M-pyrifera_M_contig124884:407..5151622815765.7097344-CDS-M-pyrifera_M_contig124884:407..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124884 408..515 -
1692277559.1310186-CDS-M-pyrifera_M_contig124884:407..5151692277559.1310186-CDS-M-pyrifera_M_contig124884:407..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124884 408..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124884.5056.1prot_M-pyrifera_M_contig124884.5056.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124884 408..515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124884.5056.1

>prot_M-pyrifera_M_contig124884.5056.1 ID=prot_M-pyrifera_M_contig124884.5056.1|Name=mRNA_M-pyrifera_M_contig124884.5056.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=36bp
DDIGCSGSEASIVDCPSGGWGVHNCAPSSESAGVVC
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mRNA from alignment at M-pyrifera_M_contig124884:408..515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124884.5056.1 ID=mRNA_M-pyrifera_M_contig124884.5056.1|Name=mRNA_M-pyrifera_M_contig124884.5056.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=108bp|location=Sequence derived from alignment at M-pyrifera_M_contig124884:408..515- (Macrocystis pyrifera P11B4 male)
GACGACATTGGCTGCAGCGGCTCTGAGGCAAGCATTGTGGACTGCCCCAG
TGGAGGTTGGGGCGTGCACAACTGTGCTCCAAGCTCTGAAAGCGCAGGCG
TGGTGTGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124884:408..515-

>mRNA_M-pyrifera_M_contig124884.5056.1 ID=mRNA_M-pyrifera_M_contig124884.5056.1|Name=mRNA_M-pyrifera_M_contig124884.5056.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig124884:408..515- (Macrocystis pyrifera P11B4 male)
GACGACATTGGCTGCAGCGGCTCTGAGGCAAGCATTGTGGACTGCCCCAG
TGGAGGTTGGGGCGTGCACAACTGTGCTCCAAGCTCTGAAAGCGCAGGCG
TGGTGTGTGACGACATTGGCTGCAGCGGCTCTGAGGCAAGCATTGTGGAC
TGCCCCAGTGGAGGTTGGGGCGTGCACAACTGTGCTCCAAGCTCTGAAAG
CGCAGGCGTGGTGTGT
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