mRNA_M-pyrifera_M_contig124866.5054.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig124866.5054.1 vs. uniprot
Match: UPI001C57B1D5 (N4-gp56 family major capsid protein n=1 Tax=Pseudohoeflea sp. DP4N28-3 TaxID=2860393 RepID=UPI001C57B1D5) HSP 1 Score: 262 bits (669), Expect = 1.820e-84 Identity = 124/172 (72.09%), Postives = 149/172 (86.63%), Query Frame = 1
Query: 1 PSSGRIIRANAEADDQSVNSASTHRFILELVDEALLKAKTSTPLITPLNIDGSDKFVMFLHPSQVKDLRTDASTSRITWFDIQKAHIQGGEKRPSNPIYSGAVGEYNGVIMHEAYRVTNGVNSSTSAAVANTKRAVLCGAQSGSVAYGRETPKSTKYSWHEELFDYEKQLGI 516
PSS RI+RAN EA+DQ++NSASTHRFILE++DEA+ KAKT+TP I+P+NI G DK+VMFLHPSQV+DLRTDASTSRITW+D QKA +QGGE R NPI+SGA+GEYNGVI+HEAYR+ NGVNSS+ A VANTKRAV+CG Q+G +A GRE +TKY W EELFDY+ QLG+
Sbjct: 171 PSSSRIVRANDEANDQAINSASTHRFILEMIDEAVWKAKTATPYISPINIGGEDKYVMFLHPSQVRDLRTDASTSRITWYDTQKALLQGGEGRSRNPIFSGALGEYNGVILHEAYRIPNGVNSSSGAQVANTKRAVMCGKQAGMIATGREHTNATKYKWTEELFDYQNQLGV 342
BLAST of mRNA_M-pyrifera_M_contig124866.5054.1 vs. uniprot
Match: UPI00102F53F7 (N4-gp56 family major capsid protein n=1 Tax=Rhizobium leguminosarum TaxID=384 RepID=UPI00102F53F7) HSP 1 Score: 159 bits (402), Expect = 1.950e-44 Identity = 88/172 (51.16%), Postives = 119/172 (69.19%), Query Frame = 1
Query: 1 PSSGRIIRANAEADDQSVNSASTHRFILELVDEALLKAKTSTPLITPLNIDGSDKFVMFLHPSQVKDLRTDASTSRITWFDIQKAHIQGGEKRPSNPIYSGAVGEYNGVIMHEAYRVTNGVNSSTSAAVANTKRAVLCGAQSGSVAYGRETPKSTKYSWHEELFDYEKQLGI 516
PS+ RI+RA A A+D+S+ SA F L+L+D+A+ KAK + P I P+ I+G +K+VM+LH +QV DLRT+ ST + W DI KA QG ++ SNPIY G++GEYN VI+ EA V GVNSST A + +RAVL GAQS A+G +T KY EELFDY+++LG+
Sbjct: 170 PSTNRIVRAAAAANDESLTSADV--FTLDLIDKAVEKAKLANPKIRPVRINGENKYVMYLHTTQVTDLRTNTSTGQ--WLDITKAVYQGSKQ--SNPIYDGSLGEYNNVILREAEHVVPGVNSSTGAQITTVRRAVLLGAQSAVAAFGMKTAPD-KYKRVEELFDYQRELGV 334
BLAST of mRNA_M-pyrifera_M_contig124866.5054.1 vs. uniprot
Match: UPI0003616A4E (N4-gp56 family major capsid protein n=2 Tax=Bartonella TaxID=773 RepID=UPI0003616A4E) HSP 1 Score: 157 bits (398), Expect = 9.350e-44 Identity = 82/172 (47.67%), Postives = 115/172 (66.86%), Query Frame = 1
Query: 1 PSSGRIIRANAEADDQSVNSASTHRFILELVDEALLKAKTSTPLITPLNIDGSDKFVMFLHPSQVKDLRTDASTSRITWFDIQKAHIQGGEKRPSNPIYSGAVGEYNGVIMHEAYRVTNGVNSSTSAAVANTKRAVLCGAQSGSVAYGRETPKSTKYSWHEELFDYEKQLGI 516
PS RIIR + + D+ +N + H F L+L+DEA+LKAK + P ITP+ IDG + +VM+LHP+QVK LRT+ T+ W DIQKA K+ NPI+ G++G YNGV++ EA VT+GV S+ S AV +RAVL GAQS + +G+ +T Y+ EE FDYE++ G+
Sbjct: 170 PSKERIIRPDGKTKDEDLNDKAKHSFSLKLIDEAVLKAKLADPYITPVTIDGDEVYVMYLHPTQVKQLRTN--TAEGEWLDIQKAVYATSRKK--NPIFDGSLGMYNGVVLREAREVTHGVKSTDSTAVKTVRRAVLLGAQSAVIGFGKNH-SATNYTLKEEFFDYEREFGV 336
BLAST of mRNA_M-pyrifera_M_contig124866.5054.1 vs. uniprot
Match: UPI000D1BA550 (N4-gp56 family major capsid protein n=1 Tax=Rhizobium pusense TaxID=648995 RepID=UPI000D1BA550) HSP 1 Score: 156 bits (394), Expect = 2.810e-43 Identity = 86/168 (51.19%), Postives = 115/168 (68.45%), Query Frame = 1
Query: 13 RIIRANAEADDQSVNSASTHRFILELVDEALLKAKTSTPLITPLNIDGSDKFVMFLHPSQVKDLRTDASTSRITWFDIQKAHIQGGEKRPSNPIYSGAVGEYNGVIMHEAYRVTNGVNSSTSAAVANTKRAVLCGAQSGSVAYGRETPKSTKYSWHEELFDYEKQLGI 516
RIIR NA A+DQS+ ST F L+L+D A+ +AK + P I P+ ++G +K+VM+LHP+QV DLRT T + W DI KA QG ++ +NPIY G++GEYNGVI+ EA V GVNSST A + +RAVL GAQS A+G +T KY EELFDY+++LG+
Sbjct: 172 RIIRPNARANDQSI--VSTDLFDLKLIDYAVEQAKLANPKIRPVRVNGENKYVMYLHPAQVTDLRTSTLTGQ--WLDITKAVYQGSKQ--NNPIYDGSLGEYNGVILREAEHVVPGVNSSTGAQITTVRRAVLLGAQSAVAAFGMKTAPD-KYKTVEELFDYQRELGV 332
BLAST of mRNA_M-pyrifera_M_contig124866.5054.1 vs. uniprot
Match: UPI001BA869EB (N4-gp56 family major capsid protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BA869EB) HSP 1 Score: 155 bits (391), Expect = 6.720e-43 Identity = 77/168 (45.83%), Postives = 112/168 (66.67%), Query Frame = 1
Query: 13 RIIRANAEADDQSVNSASTHRFILELVDEALLKAKTSTPLITPLNIDGSDKFVMFLHPSQVKDLRTDASTSRITWFDIQKAHIQGGEKRPSNPIYSGAVGEYNGVIMHEAYRVTNGVNSSTSAAVANTKRAVLCGAQSGSVAYGRETPKSTKYSWHEELFDYEKQLGI 516
RI R DD ++N +T F L ++D + +A T+TPLI P+ + G +KF+MFLH Q+ DLRT+ + + W DIQKA + GG S PIY+GA+GEYNGVI+H + R+ G+ S+ A +T+RAV GAQ+G++A+G+E + Y W EELFDYE++LG+
Sbjct: 162 RIFRGGGATDDATINGDNTKTFNLAIIDACVERAYTATPLIRPIKVQGENKFLMFLHDYQITDLRTNTNAGQ--WLDIQKAALAGGAGSKS-PIYTGALGEYNGVILHRSNRIPMGI-SNAGAQQTSTRRAVFAGAQAGALAFGKEFSEGVHYKWVEELFDYERELGV 325
BLAST of mRNA_M-pyrifera_M_contig124866.5054.1 vs. uniprot
Match: UPI001CE31A18 (N4-gp56 family major capsid protein n=1 Tax=Bradyrhizobium sp. WSM 1738 TaxID=2821405 RepID=UPI001CE31A18) HSP 1 Score: 154 bits (388), Expect = 2.010e-42 Identity = 79/172 (45.93%), Postives = 114/172 (66.28%), Query Frame = 1
Query: 1 PSSGRIIRANAEADDQSVNSASTHRFILELVDEALLKAKTSTPLITPLNIDGSDKFVMFLHPSQVKDLRTDASTSRITWFDIQKAHIQGGEKRPSNPIYSGAVGEYNGVIMHEAYRVTNGVNSSTSAAVANTKRAVLCGAQSGSVAYGRETPKSTKYSWHEELFDYEKQLGI 516
PS+ RI R DD ++N +T F L+++D + A T++P+I P+ ++G K++ FLH QV +RT ST W DIQKA + GG S PIY+GA+GEYN V++H+ R+TNG+ S+ A ANT+RAV CGAQ+G V +G+E K + + W EELFDYE++LG+
Sbjct: 160 PSTNRIYRPGGATDDATINGDNTKFFKLDIIDAFVEAAGTASPMIRPIMVNGEKKYLGFLHDYQVTAMRT--STDAGQWLDIQKAALAGGAASKS-PIYTGALGEYNNVVLHKWNRITNGI-SNAGAVQANTRRAVFCGAQAGVVGFGKEFSKGSHFKWIEELFDYERELGV 327
BLAST of mRNA_M-pyrifera_M_contig124866.5054.1 vs. uniprot
Match: A0A5C7Q3P9_9DELT (N4-gp56 family major capsid protein n=1 Tax=Desulfurellales bacterium TaxID=2482794 RepID=A0A5C7Q3P9_9DELT) HSP 1 Score: 153 bits (386), Expect = 4.250e-42 Identity = 85/179 (47.49%), Postives = 119/179 (66.48%), Query Frame = 1
Query: 1 PSSGRIIRANAEAD---DQSVNSASTHRFILELVDEALLKAKTSTPLITPLNIDGSDKFVMFLHPSQVKDLRTDASTSRITWFDIQKAHIQGGE----KRPSNPIYSGAVGEYNGVIMHEAYRVTNGVNSSTSAAVANTKRAVLCGAQSGSVAYGRETPKSTKYSWHEELFDYEKQLGI 516
PSSGR + ++ DQS+ S T F L ++D+A+ KAK ++PLI P+ ++G D +VMFLHP QV +RT+ ST + W DIQKA + GG+ + N +++GA+G YNGVI+HE+ RVT GVN T AAVANT+RAVLCGA + + YG+ S + W E+ FDY+ QLG+
Sbjct: 158 PSSGRQVWSSISGTITADQSLTS--TDIFTLAMIDKAVEKAKMASPLIRPIRMNGKDHYVMFLHPYQVTSMRTNTSTGQ--WLDIQKAAMGGGKDSGGEGGQNGVFTGALGMYNGVILHESTRVTQGVNGGTRAAVANTRRAVLCGANAAHIGYGQGHSMSN-WKWVEKYFDYDNQLGV 331
BLAST of mRNA_M-pyrifera_M_contig124866.5054.1 vs. uniprot
Match: A0A846TD43_9CYAN (N4-gp56 family major capsid protein n=1 Tax=Synechococcaceae cyanobacterium SM1_2_3 TaxID=2720456 RepID=A0A846TD43_9CYAN) HSP 1 Score: 152 bits (384), Expect = 1.020e-41 Identity = 84/178 (47.19%), Postives = 122/178 (68.54%), Query Frame = 1
Query: 1 PSSGRIIRANAEADDQSVNSASTHRFILELVDEALLKAKTST------PLITPLNIDGSDKFVMFLHPSQVKDLRTDASTSRITWFDIQKAHIQGGEKRPSNPIYSGAVGEYNGVIMHEAYRVTNGVNSSTSAAVANTKRAVLCGAQSGSVAYGRETPKSTKYSWHEELFDYEKQLGI 516
PS+ RIIRA +A DQ++ + RF L +D A +A+T++ PL+ P+ +G+D +VMFLH QV DLRT ST+ W DIQK+ + GG+ + NPI++GA+G YNGV++H+A RVT GV+S+ AV NT+RAVLCGAQ+ ++A+G E +T+++W EE FDY Q G+
Sbjct: 158 PSTNRIIRAGGQATDQALTVSD--RFDLTHIDVARNRAETASIANGTGPLLRPIKYEGNDYYVMFLHDDQVFDLRT--STTAGQWQDIQKSAMMGGDVK-DNPIFTGALGIYNGVVLHKATRVTRGVHSTAGTAVDNTRRAVLCGAQAATIAFGSENG-ATRFNWVEEKFDYNNQFGV 329
BLAST of mRNA_M-pyrifera_M_contig124866.5054.1 vs. uniprot
Match: UPI000B5AACED (N4-gp56 family major capsid protein n=1 Tax=Rhizobium meliloti TaxID=382 RepID=UPI000B5AACED) HSP 1 Score: 151 bits (382), Expect = 1.860e-41 Identity = 83/172 (48.26%), Postives = 116/172 (67.44%), Query Frame = 1
Query: 1 PSSGRIIRANAEADDQSVNSASTHRFILELVDEALLKAKTSTPLITPLNIDGSDKFVMFLHPSQVKDLRTDASTSRITWFDIQKAHIQGGEKRPSNPIYSGAVGEYNGVIMHEAYRVTNGVNSSTSAAVANTKRAVLCGAQSGSVAYGRETPKSTKYSWHEELFDYEKQLGI 516
PS+ RI+RA A A D+++ SA+ F L+L+D+A+ +AK + P I P+ ++G K+V++LHP+QV LRT+ ST + W DI KA QG K NPIY G++GEYN VI+ EA V GVNS+T A + +RAVL GAQS A+G +T KY EELFDY+++LG+
Sbjct: 170 PSTNRIVRAAAAATDEALVSANV--FTLDLIDKAVERAKLANPKIRPVMVNGEKKYVLYLHPTQVTSLRTNTSTGQ--WLDITKAIYQGSRK--DNPIYDGSLGEYNNVILREAEHVMPGVNSTTGAQITTVRRAVLLGAQSAVAAFGMKTAPD-KYKTVEELFDYQRELGV 334
BLAST of mRNA_M-pyrifera_M_contig124866.5054.1 vs. uniprot
Match: A0A0R3MNX0_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium retamae TaxID=1300035 RepID=A0A0R3MNX0_9BRAD) HSP 1 Score: 150 bits (378), Expect = 5.990e-41 Identity = 80/172 (46.51%), Postives = 115/172 (66.86%), Query Frame = 1
Query: 1 PSSGRIIRANAEADDQSVNSASTHRFILELVDEALLKAKTSTPLITPLNIDGSDKFVMFLHPSQVKDLRTDASTSRITWFDIQKAHIQGGEKRPSNPIYSGAVGEYNGVIMHEAYRVTNGVNSSTSAAVANTKRAVLCGAQSGSVAYGRETPKSTKYSWHEELFDYEKQLGI 516
PS+ R R A DD ++N+ +T F L ++D + A T++PLI P+ ++G KFVMFLH QV D+RT+ + + W DIQKA + GG S PIY+GA+GEYN I+H+ R+ NG+ S+ AA +T+RAV CGAQ+G V +G+E K + + W EELFDYE++LG+
Sbjct: 160 PSADRHYRFGA-TDDATINADNTKTFNLGVIDACVEMAGTASPLIRPVMVNGEKKFVMFLHDYQVTDMRTNTNAGQ--WLDIQKAALAGGAASKS-PIYTGALGEYNNTILHKWNRLPNGI-SNAGAAQTSTRRAVFCGAQAGVVGFGKEFAKGSHFKWIEELFDYERELGV 326 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124866.5054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig124866.5054.1 >prot_M-pyrifera_M_contig124866.5054.1 ID=prot_M-pyrifera_M_contig124866.5054.1|Name=mRNA_M-pyrifera_M_contig124866.5054.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp PSSGRIIRANAEADDQSVNSASTHRFILELVDEALLKAKTSTPLITPLNIback to top mRNA from alignment at M-pyrifera_M_contig124866:2..517+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig124866.5054.1 ID=mRNA_M-pyrifera_M_contig124866.5054.1|Name=mRNA_M-pyrifera_M_contig124866.5054.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig124866:2..517+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig124866:2..517+ >mRNA_M-pyrifera_M_contig124866.5054.1 ID=mRNA_M-pyrifera_M_contig124866.5054.1|Name=mRNA_M-pyrifera_M_contig124866.5054.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig124866:2..517+ (Macrocystis pyrifera P11B4 male)back to top |