mRNA_M-pyrifera_M_contig124863.5053.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124863.5053.1
Unique NamemRNA_M-pyrifera_M_contig124863.5053.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124863.5053.1 vs. uniprot
Match: A0A3B1AJ20_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1AJ20_9ZZZZ)

HSP 1 Score: 119 bits (298), Expect = 7.270e-32
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:    1 LKSLLGCSYFYGYVTGLITKTAFDKFASLIRSEELGKNTGRLLQSVIANMFFPNTDPDWTAVQAWEAQSVAYGMAEDTGYEDGYQAGVKFADEMAAGTDISQTSLLAAELLK 336
            ++ L+  +YFYGYV G   KT+  KF  ++  E LG+N  RLLQSVIAN+F+ N++PDW AVQ WEAQS AYGM ++  YE G + G  FA+E+ +  D SQT+LL  EL +
Sbjct:   54 IQVLMKDAYFYGYVIGACMKTSVVKFTPIVEKENLGENYRRLLQSVIANLFYQNSEPDWDAVQMWEAQSAAYGMVKNPNYERGMEVGAVFAEEIISRQDFSQTTLLGNELFR 165
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124863.5053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3B1AJ20_9ZZZZ7.270e-3250.89Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124863contigM-pyrifera_M_contig124863:1..342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.5872629-CDS-M-pyrifera_M_contig124863:0..3421622815765.5872629-CDS-M-pyrifera_M_contig124863:0..342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124863 1..342 +
1692277559.0753162-CDS-M-pyrifera_M_contig124863:0..3421692277559.0753162-CDS-M-pyrifera_M_contig124863:0..342Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124863 1..342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124863.5053.1prot_M-pyrifera_M_contig124863.5053.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124863 1..342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124863.5053.1

>prot_M-pyrifera_M_contig124863.5053.1 ID=prot_M-pyrifera_M_contig124863.5053.1|Name=mRNA_M-pyrifera_M_contig124863.5053.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
LKSLLGCSYFYGYVTGLITKTAFDKFASLIRSEELGKNTGRLLQSVIANM
FFPNTDPDWTAVQAWEAQSVAYGMAEDTGYEDGYQAGVKFADEMAAGTDI
SQTSLLAAELLKQ*
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mRNA from alignment at M-pyrifera_M_contig124863:1..342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124863.5053.1 ID=mRNA_M-pyrifera_M_contig124863.5053.1|Name=mRNA_M-pyrifera_M_contig124863.5053.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig124863:1..342+ (Macrocystis pyrifera P11B4 male)
CTGAAGTCATTGCTGGGTTGCAGTTACTTTTACGGTTACGTTACAGGGCT
TATTACAAAAACGGCGTTCGATAAATTCGCATCTTTGATAAGAAGCGAGG
AACTCGGCAAAAATACCGGCCGCTTACTACAGTCTGTAATTGCAAATATG
TTCTTTCCAAATACCGATCCGGACTGGACCGCTGTTCAGGCGTGGGAAGC
GCAATCTGTGGCATATGGTATGGCCGAAGATACCGGGTATGAGGACGGAT
ATCAGGCAGGTGTGAAGTTTGCGGATGAAATGGCGGCAGGTACGGACATA
TCCCAAACCTCGCTGTTGGCAGCCGAACTACTTAAACAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124863:1..342+

>mRNA_M-pyrifera_M_contig124863.5053.1 ID=mRNA_M-pyrifera_M_contig124863.5053.1|Name=mRNA_M-pyrifera_M_contig124863.5053.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig124863:1..342+ (Macrocystis pyrifera P11B4 male)
CTGAAGTCATTGCTGGGTTGCAGTTACTTTTACGGTTACGTTACAGGGCT
TATTACAAAAACGGCGTTCGATAAATTCGCATCTTTGATAAGAAGCGAGG
AACTCGGCAAAAATACCGGCCGCTTACTACAGTCTGTAATTGCAAATATG
TTCTTTCCAAATACCGATCCGGACTGGACCGCTGTTCAGGCGTGGGAAGC
GCAATCTGTGGCATATGGTATGGCCGAAGATACCGGGTATGAGGACGGAT
ATCAGGCAGGTGTGAAGTTTGCGGATGAAATGGCGGCAGGTACGGACATA
TCCCAAACCTCGCTGTTGGCAGCCGAACTACTTAAACAATGACTGAAGTC
ATTGCTGGGTTGCAGTTACTTTTACGGTTACGTTACAGGGCTTATTACAA
AAACGGCGTTCGATAAATTCGCATCTTTGATAAGAAGCGAGGAACTCGGC
AAAAATACCGGCCGCTTACTACAGTCTGTAATTGCAAATATGTTCTTTCC
AAATACCGATCCGGACTGGACCGCTGTTCAGGCGTGGGAAGCGCAATCTG
TGGCATATGGTATGGCCGAAGATACCGGGTATGAGGACGGATATCAGGCA
GGTGTGAAGTTTGCGGATGAAATGGCGGCAGGTACGGACATATCCCAAAC
CTCGCTGTTGGCAGCCGAACTACTTAAACAATGA
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