mRNA_M-pyrifera_M_contig124842.5048.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124842.5048.1
Unique NamemRNA_M-pyrifera_M_contig124842.5048.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124842.5048.1 vs. uniprot
Match: A0A6A4KLK2_9ERIC (eIF3_N domain-containing protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4KLK2_9ERIC)

HSP 1 Score: 80.9 bits (198), Expect = 1.260e-18
Identity = 35/71 (49.30%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 MAQYDLTPMVAKFLDRHLVLPLLDFLSNAPIFNPKDLLKARVQLLSKTNMVDFHEELHKLLHESDEAPKGM 213
            MA YDLTP +A  LDRHLV P+L+FL    ++  +D+LKA+++LL+ TNMVD+  ++HK L+ ++E P+G+
Sbjct:    1 MANYDLTPRIAPNLDRHLVFPILEFLQERQLYADEDILKAKIELLNNTNMVDYAMDIHKSLYHTEEVPQGV 71          
BLAST of mRNA_M-pyrifera_M_contig124842.5048.1 vs. uniprot
Match: UPI00098E2A61 (eukaryotic translation initiation factor 3 subunit E-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E2A61)

HSP 1 Score: 81.6 bits (200), Expect = 6.520e-18
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 MAQYDLTPMVAKFLDRHLVLPLLDFLSNAPIFNPKDLLKARVQLLSKTNMVDFHEELHKLLHESDEAPKGM 213
            MA YDLT  +A  LDRHLV PLL+FL     +N  D+LKA+++LLSKTNMVD+  ++HK L+ ++E P+ M
Sbjct:    1 MANYDLTSRIAPHLDRHLVFPLLEFLQERGFYNDDDILKAKIELLSKTNMVDYAMDIHKNLYHTEEVPQEM 71          
BLAST of mRNA_M-pyrifera_M_contig124842.5048.1 vs. uniprot
Match: A0A4W3JD29_CALMI (eIF3_N domain-containing protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3JD29_CALMI)

HSP 1 Score: 79.0 bits (193), Expect = 9.010e-18
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 MAQYDLTPMVAKFLDRHLVLPLLDFLSNAPIFNPKDLLKARVQLLSKTNMVDFHEELHKLLHESDEAPKG 210
            MA YDLT  +A FLDRHLV PLL+FLS   I+N K+LL+ ++ LLS TNMVDF  +++K L+   E P+G
Sbjct:    1 MADYDLTMKIANFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDKEIPQG 70          
BLAST of mRNA_M-pyrifera_M_contig124842.5048.1 vs. uniprot
Match: UPI000C1D66B9 (eukaryotic translation initiation factor 3 subunit E-like n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D66B9)

HSP 1 Score: 79.7 bits (195), Expect = 1.750e-17
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    4 AQYDLTPMVAKFLDRHLVLPLLDFLSNAPIFNPKDLLKARVQLLSKTNMVDFHEELHKLLHESDEAPKGML 216
            A+YDLTP +A  LDRHLV PLL+FL    ++  +D+LKA+++LL+ TNMVD+  ++HK L+ SD+ P  M+
Sbjct:    3 AKYDLTPRIAPQLDRHLVFPLLEFLQERGLYAEEDILKAKIELLNNTNMVDYAMDIHKSLYHSDDVPNEMV 73          
BLAST of mRNA_M-pyrifera_M_contig124842.5048.1 vs. uniprot
Match: A0A218W4P1_PUNGR (Eukaryotic translation initiation factor 3 subunit E n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218W4P1_PUNGR)

HSP 1 Score: 84.3 bits (207), Expect = 2.150e-17
Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 MAQYDLTPMVAKFLDRHLVLPLLDFLSNAPIFNPKDLLKARVQLLSKTNMVDFHEELHKLLHESDEAPKGML 216
            MAQYDLTP +A  LDRHLV PLL+FL    ++  +++LKA+++LLSKTNMVD+  ++HK L+ ++E P+ M+
Sbjct:    1 MAQYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEEILKAKIELLSKTNMVDYAMDIHKSLYHTEEVPQDMV 72          
BLAST of mRNA_M-pyrifera_M_contig124842.5048.1 vs. uniprot
Match: A0A674DC66_SALTR (Eukaryotic translation initiation factor 3 subunit E n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A674DC66_SALTR)

HSP 1 Score: 77.4 bits (189), Expect = 3.300e-17
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 MAQYDLTPMVAKFLDRHLVLPLLDFLSNAPIFNPKDLLKARVQLLSKTNMVDFHEELHKLLHESDEAP 204
            MA+YDLT  +A FLDRHLV PLL+FLS   I+N K+LL  ++ LLS+TNMVDF  ++HK L    E P
Sbjct:    1 MAEYDLTTKIAHFLDRHLVFPLLEFLSVKEIYNEKELLHGKLDLLSETNMVDFAMDVHKNLFPEKEIP 68          
BLAST of mRNA_M-pyrifera_M_contig124842.5048.1 vs. uniprot
Match: A0A6A2X8H6_HIBSY (Cyclin family isoform 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X8H6_HIBSY)

HSP 1 Score: 80.5 bits (197), Expect = 3.990e-17
Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 MAQYDLTPMVAKFLDRHLVLPLLDFLSNAPIFNPKDLLKARVQLLSKTNMVDFHEELHKLLHESDEAPKGML 216
            MA YDLTP +A  LDRHLV PLL+FL    ++  + +LKA+++LL+KTNMVD+  ++HK L+ +D+ P+ M+
Sbjct:    1 MAAYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKNLYHTDDVPQDMI 72          
BLAST of mRNA_M-pyrifera_M_contig124842.5048.1 vs. uniprot
Match: A0A199UQA3_ANACO (Eukaryotic translation initiation factor 3 subunit E n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UQA3_ANACO)

HSP 1 Score: 79.7 bits (195), Expect = 4.600e-17
Identity = 35/70 (50.00%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 MAQYDLTPMVAKFLDRHLVLPLLDFLSNAPIFNPKDLLKARVQLLSKTNMVDFHEELHKLLHESDEAPKG 210
            MA YDLT  +A  LDRHLV PLL+FL    +++  ++LKA+++LLS+TNMVD+  ++HK L+ +D+ P+G
Sbjct:    1 MANYDLTSRIAPHLDRHLVFPLLEFLQERQLYDDDEILKAKIELLSQTNMVDYAMDIHKSLYHTDDVPQG 70          
BLAST of mRNA_M-pyrifera_M_contig124842.5048.1 vs. uniprot
Match: A0A672GV44_SALFA (eIF3_N domain-containing protein n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A672GV44_SALFA)

HSP 1 Score: 77.0 bits (188), Expect = 4.940e-17
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 MAQYDLTPMVAKFLDRHLVLPLLDFLSNAPIFNPKDLLKARVQLLSKTNMVDFHEELHKLLHESDEAP---KGML 216
            MA+YDLT  +A FLDRHLV PLL+FLS   I+N K+LL+ ++ LLS TNMVDF  +++K L+   E P   +G+L
Sbjct:    1 MAEYDLTTKIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDKEIPHCNRGLL 75          
BLAST of mRNA_M-pyrifera_M_contig124842.5048.1 vs. uniprot
Match: B9T350_RICCO (Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9T350_RICCO)

HSP 1 Score: 77.0 bits (188), Expect = 5.340e-17
Identity = 34/72 (47.22%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 MAQYDLTPMVAKFLDRHLVLPLLDFLSNAPIFNPKDLLKARVQLLSKTNMVDFHEELHKLLHESDEAPKGML 216
            MA YDLTP +A  LDRHLV PLL+FL    ++    + K++++LLSKTNMVD+  ++HK L+ +++ P+ M+
Sbjct:    1 MATYDLTPRIAPNLDRHLVFPLLEFLQERQLYPEDQIFKSKIELLSKTNMVDYAMDIHKSLYHTEDVPQDMI 72          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124842.5048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A4KLK2_9ERIC1.260e-1849.30eIF3_N domain-containing protein (Fragment) n=1 Ta... [more]
UPI00098E2A616.520e-1853.52eukaryotic translation initiation factor 3 subunit... [more]
A0A4W3JD29_CALMI9.010e-1855.71eIF3_N domain-containing protein n=1 Tax=Callorhin... [more]
UPI000C1D66B91.750e-1750.70eukaryotic translation initiation factor 3 subunit... [more]
A0A218W4P1_PUNGR2.150e-1752.78Eukaryotic translation initiation factor 3 subunit... [more]
A0A674DC66_SALTR3.300e-1757.35Eukaryotic translation initiation factor 3 subunit... [more]
A0A6A2X8H6_HIBSY3.990e-1750.00Cyclin family isoform 1 n=1 Tax=Hibiscus syriacus ... [more]
A0A199UQA3_ANACO4.600e-1750.00Eukaryotic translation initiation factor 3 subunit... [more]
A0A672GV44_SALFA4.940e-1753.33eIF3_N domain-containing protein n=2 Tax=Euteleost... [more]
B9T350_RICCO5.340e-1747.22Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124842contigM-pyrifera_M_contig124842:51..325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.0
Seed ortholog evalue3.2e-14
Seed eggNOG ortholog3218.PP1S9_109V6.1
Preferred nameEIF3E
KEGG koko:K03250
KEGG Pathwayko03013,ko05160,map03013,map05160
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000502,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0005886,GO:0006139,GO:0006351,GO:0006352,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009651,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016020,GO:0016070,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0022414,GO:0030371,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031597,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045182,GO:0046483,GO:0048367,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0061458,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0090567,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1905368,GO:1905369,GO:2000112,GO:2000113
EggNOG free text desc.component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
EggNOG OGs37HTI@33090,3GE37@35493,KOG2758@1,KOG2758@2759
COG Functional cat.J
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03051,ko04147
Exons2
Model size216
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.3815594-CDS-M-pyrifera_M_contig124842:50..1821622815765.3815594-CDS-M-pyrifera_M_contig124842:50..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124842 51..182 -
1692277558.9873474-CDS-M-pyrifera_M_contig124842:50..1821692277558.9873474-CDS-M-pyrifera_M_contig124842:50..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124842 51..182 -
1622815765.3935947-CDS-M-pyrifera_M_contig124842:241..3251622815765.3935947-CDS-M-pyrifera_M_contig124842:241..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124842 242..325 -
1692277559.0030591-CDS-M-pyrifera_M_contig124842:241..3251692277559.0030591-CDS-M-pyrifera_M_contig124842:241..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124842 242..325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124842.5048.1prot_M-pyrifera_M_contig124842.5048.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124842 51..325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124842.5048.1

>prot_M-pyrifera_M_contig124842.5048.1 ID=prot_M-pyrifera_M_contig124842.5048.1|Name=mRNA_M-pyrifera_M_contig124842.5048.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
MAQYDLTPMVAKFLDRHLVLPLLDFLSNAPIFNPKDLLKARVQLLSKTNM
VDFHEELHKLLHESDEAPKGML
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mRNA from alignment at M-pyrifera_M_contig124842:51..325-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124842.5048.1 ID=mRNA_M-pyrifera_M_contig124842.5048.1|Name=mRNA_M-pyrifera_M_contig124842.5048.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=275bp|location=Sequence derived from alignment at M-pyrifera_M_contig124842:51..325- (Macrocystis pyrifera P11B4 male)
ATGGCGCAGTACGACCTCACACCGATGGTTGCCAAGTTCCTGGACAGGCA CCTGGTGCTCCCGCTCCTCGACTTCCTCTCCAACGTGAGTCCCCCGCCGC AGCTGGCGATCTGCGGCGCTGGCTGACGTGTGAACAGCAAGAGGCGCCGA TCTTCAACCCCAAGGACCTCCTCAAGGCGCGCGTGCAGCTACTCAGCAAG ACCAACATGGTCGACTTCCACGAGGAGCTCCACAAGCTCCTTCACGAGAG CGACGAGGCACCTAAAGGTATGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124842:51..325-

>mRNA_M-pyrifera_M_contig124842.5048.1 ID=mRNA_M-pyrifera_M_contig124842.5048.1|Name=mRNA_M-pyrifera_M_contig124842.5048.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig124842:51..325- (Macrocystis pyrifera P11B4 male)
ATGGCGCAGTACGACCTCACACCGATGGTTGCCAAGTTCCTGGACAGGCA
CCTGGTGCTCCCGCTCCTCGACTTCCTCTCCAACATGGCGCAGTACGACC
TCACACCGATGGTTGCCAAGTTCCTGGACAGGCACCTGGTGCTCCCGCTC
CTCGACTTCCTCTCCAACGCGCCGATCTTCAACCCCAAGGACCTCCTCAA
GGCGCGCGTGCAGCTACTCAGCAAGACCAACATGGTCGACTTCCACGAGG
AGCTCCACAAGCTCCTTCACGAGAGCGACGAGGCACCTAAAGGTATGCTG
GCGCCGATCTTCAACCCCAAGGACCTCCTCAAGGCGCGCGTGCAGCTACT
CAGCAAGACCAACATGGTCGACTTCCACGAGGAGCTCCACAAGCTCCTTC
ACGAGAGCGACGAGGCACCTAAAGGTATGCTG
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