mRNA_M-pyrifera_M_contig124808.5041.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124808.5041.1
Unique NamemRNA_M-pyrifera_M_contig124808.5041.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124808.5041.1 vs. uniprot
Match: A0A0L0GE16_9EUKA (Serine/threonine protein kinase (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GE16_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 1.720e-7
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   13 RFEKLKLVQHPNLAPYIDVVVGRHGRVFLVSEHRTTTLRDVFA 141
            RFE LK ++HP+L  YID+V+G H RV +VSE  TTTL DV A
Sbjct:   68 RFESLKGIRHPHLCEYIDLVIGDHERVMVVSEAYTTTLSDVIA 110
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BLAST of mRNA_M-pyrifera_M_contig124808.5041.1 vs. uniprot
Match: A0A7M5UYQ2_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UYQ2_9CNID)

HSP 1 Score: 54.3 bits (129), Expect = 4.440e-7
Identity = 22/42 (52.38%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 VMDRFEKLKLVQHPNLAPYIDVVVGRHGRVFLVSEHRTTTLR 129
            ++ RF+KLKL+QHP+L  Y+D+V G+H R+ +VSE  TT L+
Sbjct:   40 ILGRFQKLKLLQHPHLCQYVDIVRGKHERLVIVSEFYTTNLK 81
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BLAST of mRNA_M-pyrifera_M_contig124808.5041.1 vs. uniprot
Match: A0A433DCA6_9FUNG (Kinase-like domain-containing protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DCA6_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 1.350e-5
Identity = 17/45 (37.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 EVMDRFEKLKLVQHPNLAPYIDVVVGRHGRVFLVSEHRTTTLRDV 135
            +++ RF+ LK + HPNL  Y+++V G+H R+F+VSE+   ++  +
Sbjct:   51 QIIGRFQLLKTLAHPNLCEYVEIVKGKHDRIFVVSEYHENSMHKI 95
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BLAST of mRNA_M-pyrifera_M_contig124808.5041.1 vs. uniprot
Match: A0A015IET9_RHIIW (Pho85p n=10 Tax=Rhizophagus TaxID=1129544 RepID=A0A015IET9_RHIIW)

HSP 1 Score: 48.5 bits (114), Expect = 4.890e-5
Identity = 19/46 (41.30%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 EVMDRFEKLKLVQHPNLAPYIDVVVGRHGRVFLVSEHRTTTLRDVF 138
            E+  RF+ LK + HPNL  Y+++V G+H R+F+VSE+    L  ++
Sbjct:   44 EIFGRFQALKTLLHPNLCEYVEIVKGKHDRLFVVSEYHMNHLGKLY 89
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BLAST of mRNA_M-pyrifera_M_contig124808.5041.1 vs. uniprot
Match: A0A1Y1XZ41_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XZ41_9FUNG)

HSP 1 Score: 48.1 bits (113), Expect = 6.690e-5
Identity = 18/36 (50.00%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 EVMDRFEKLKLVQHPNLAPYIDVVVGRHGRVFLVSE 108
            E++ RF+KL+ + HPNL  Y+D++ G+H R+FLV+E
Sbjct:   49 EILGRFQKLQTLAHPNLCEYVDLLKGKHERLFLVTE 84
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BLAST of mRNA_M-pyrifera_M_contig124808.5041.1 vs. uniprot
Match: A0A397SN60_9GLOM (Uncharacterized protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SN60_9GLOM)

HSP 1 Score: 48.1 bits (113), Expect = 6.700e-5
Identity = 19/49 (38.78%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 EVMDRFEKLKLVQHPNLAPYIDVVVGRHGRVFLVSEHRTTTLRDVFAPS 147
            E+  RF+ LK + HPNL  Y+++V G+H R+F+V E+    L +++  S
Sbjct:   44 EIFGRFQALKTLLHPNLCEYVEIVKGKHDRLFVVFEYHMNHLGELYQSS 92
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124808.5041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A0L0GE16_9EUKA1.720e-760.47Serine/threonine protein kinase (Fragment) n=1 Tax... [more]
A0A7M5UYQ2_9CNID4.440e-752.38Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A433DCA6_9FUNG1.350e-537.78Kinase-like domain-containing protein n=2 Tax=Jimg... [more]
A0A015IET9_RHIIW4.890e-541.30Pho85p n=10 Tax=Rhizophagus TaxID=1129544 RepID=A0... [more]
A0A1Y1XZ41_9FUNG6.690e-550.00Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A397SN60_9GLOM6.700e-538.78Uncharacterized protein n=1 Tax=Glomus cerebriform... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124808contigM-pyrifera_M_contig124808:282..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size165
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.070341-UTR-M-pyrifera_M_contig124808:281..2871622815765.070341-UTR-M-pyrifera_M_contig124808:281..287Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124808 282..287 +
1692277558.871061-UTR-M-pyrifera_M_contig124808:281..2871692277558.871061-UTR-M-pyrifera_M_contig124808:281..287Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124808 282..287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.0805628-CDS-M-pyrifera_M_contig124808:287..4521622815765.0805628-CDS-M-pyrifera_M_contig124808:287..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124808 288..452 +
1692277558.8799193-CDS-M-pyrifera_M_contig124808:287..4521692277558.8799193-CDS-M-pyrifera_M_contig124808:287..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124808 288..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124808.5041.1prot_M-pyrifera_M_contig124808.5041.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124808 288..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124808.5041.1

>prot_M-pyrifera_M_contig124808.5041.1 ID=prot_M-pyrifera_M_contig124808.5041.1|Name=mRNA_M-pyrifera_M_contig124808.5041.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MDRFEKLKLVQHPNLAPYIDVVVGRHGRVFLVSEHRTTTLRDVFAPSHTT
KKPSW
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mRNA from alignment at M-pyrifera_M_contig124808:282..452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124808.5041.1 ID=mRNA_M-pyrifera_M_contig124808.5041.1|Name=mRNA_M-pyrifera_M_contig124808.5041.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig124808:282..452+ (Macrocystis pyrifera P11B4 male)
GAAGTGATGGACAGATTCGAGAAGCTGAAGCTCGTGCAGCACCCCAACCT
GGCTCCCTACATCGACGTCGTCGTGGGCAGGCATGGAAGAGTCTTCCTCG
TGTCTGAGCACCGCACCACGACCCTGCGCGACGTCTTCGCACCCAGCCAC
ACCACCAAGAAGCCCTCCTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124808:282..452+

>mRNA_M-pyrifera_M_contig124808.5041.1 ID=mRNA_M-pyrifera_M_contig124808.5041.1|Name=mRNA_M-pyrifera_M_contig124808.5041.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig124808:282..452+ (Macrocystis pyrifera P11B4 male)
ATGGACAGATTCGAGAAGCTGAAGCTCGTGCAGCACCCCAACCTGGCTCC
CTACATCGACGTCGTCGTGGGCAGGCATGGAAGAGTCTTCCTCGTGTCTG
AGCACCGCACCACGACCCTGCGCGACGTCTTCGCACCCAGCCACACCACC
AAGAAGCCCTCCTGGATGGACAGATTCGAGAAGCTGAAGCTCGTGCAGCA
CCCCAACCTGGCTCCCTACATCGACGTCGTCGTGGGCAGGCATGGAAGAG
TCTTCCTCGTGTCTGAGCACCGCACCACGACCCTGCGCGACGTCTTCGCA
CCCAGCCACACCACCAAGAAGCCCTCCTGG
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