mRNA_M-pyrifera_M_contig124807.5040.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124807.5040.1
Unique NamemRNA_M-pyrifera_M_contig124807.5040.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A397G5H5_9GLOM (RRM domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G5H5_9GLOM)

HSP 1 Score: 96.3 bits (238), Expect = 5.560e-24
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    7 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDGR 177
            SASLYVG+LDP V E++LF++F  VGPVASIRVCRD VTRRSLGYAYVN+HN+ DG+
Sbjct:   50 SASLYVGELDPSVTEAMLFELFNPVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDGK 106
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A7S3SYJ6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SYJ6_9SPIT)

HSP 1 Score: 92.8 bits (229), Expect = 1.360e-22
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 PMSASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITD 171
            P  ASLYVGDL PDV E++L+++F  VGPVASIRVCRDTVTRRSLGY YVNYH++ D
Sbjct:   13 PQFASLYVGDLHPDVTEAMLYEIFNSVGPVASIRVCRDTVTRRSLGYGYVNYHSVGD 69
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A2G4TA72_RHIZD (Polyadenylate-binding protein n=7 Tax=Rhizopus TaxID=4842 RepID=A0A2G4TA72_RHIZD)

HSP 1 Score: 99.0 bits (245), Expect = 1.490e-22
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 PMSASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 174
            P SASLYVG+LDP V E++LF+MF  +GPVASIRVCRD VTRRSLGYAYVN+HNI DG
Sbjct:   45 PPSASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIADG 102
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A1D1Z4W1_9ARAE (Polyadenylate-binding protein, cytoplasmic and nuclear (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z4W1_9ARAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.630e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    7 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 174
            SASLYVG+LDP V E++LF+MF  VGPVASIRVCRD VTRRSLGYAYVN+HN+ DG
Sbjct:   47 SASLYVGELDPSVTEAMLFEMFSSVGPVASIRVCRDAVTRRSLGYAYVNFHNVIDG 102
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A261XZ09_9FUNG (Polyadenylate-binding protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XZ09_9FUNG)

HSP 1 Score: 97.8 bits (242), Expect = 3.780e-22
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 PMSASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 174
            P S SLYVG+LDP V E++LF+MF  VGPVASIRVCRD VTRRSLGYAYVNYHN  DG
Sbjct:   32 PASTSLYVGELDPSVTEAMLFEMFNMVGPVASIRVCRDAVTRRSLGYAYVNYHNAADG 89
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A086TJV3_9FUNG (Polyadenylate-binding protein n=1 Tax=Podila verticillata NRRL 6337 TaxID=1069443 RepID=A0A086TJV3_9FUNG)

HSP 1 Score: 97.8 bits (242), Expect = 3.860e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    7 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 174
            SASLYVG+LDP V E++LF+MF  VGPVASIRVCRD VTRRSLGYAYVN+HN+ DG
Sbjct:   53 SASLYVGELDPSVNEAMLFEMFNSVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDG 108
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A197KFZ8_9FUNG (Polyadenylate-binding protein n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A197KFZ8_9FUNG)

HSP 1 Score: 97.4 bits (241), Expect = 5.240e-22
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    7 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 174
            SASLY+G+LDP V E++LF+MF  VGPVASIRVCRD VTRRSLGYAYVN+HN+ DG
Sbjct:   60 SASLYIGELDPSVNEAMLFEMFNSVGPVASIRVCRDAVTRRSLGYAYVNFHNVADG 115
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A0B7NMG9_9FUNG (Polyadenylate-binding protein n=9 Tax=Mucorineae TaxID=1344963 RepID=A0A0B7NMG9_9FUNG)

HSP 1 Score: 97.1 bits (240), Expect = 7.100e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    7 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 174
            SASLYVG+LDP V E++LF+MF  +GPVASIRVCRD VTRRSLGYAYVN+HNI DG
Sbjct:   44 SASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDG 99
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A7S2V0G2_9STRA (Polyadenylate-binding protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0G2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.150e-22
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    7 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITD 171
            SASLYVGDL PDV E+LLF++F  VGPVASIRVCRDTVTRRSLGYAYVN+HN+ D
Sbjct:   14 SASLYVGDLAPDVSEALLFEIFNAVGPVASIRVCRDTVTRRSLGYAYVNFHNVAD 68
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BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Match: A0A1X2HWX9_SYNRA (Polyadenylate-binding protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HWX9_SYNRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.160e-22
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    7 SASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVNYHNITDG 174
            SASLYVG+LDP V E++LF+MF  VGPVASIRVCRD VTRRSLGYAYVN+HN+ DG
Sbjct:   48 SASLYVGELDPSVTEAMLFEMFNMVGPVASIRVCRDAVTRRSLGYAYVNFHNVADG 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124807.5040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397G5H5_9GLOM5.560e-2475.44RRM domain-containing protein n=1 Tax=Diversispora... [more]
A0A7S3SYJ6_9SPIT1.360e-2273.68Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A2G4TA72_RHIZD1.490e-2277.59Polyadenylate-binding protein n=7 Tax=Rhizopus Tax... [more]
A0A1D1Z4W1_9ARAE1.630e-2278.57Polyadenylate-binding protein, cytoplasmic and nuc... [more]
A0A261XZ09_9FUNG3.780e-2277.59Polyadenylate-binding protein n=1 Tax=Bifiguratus ... [more]
A0A086TJV3_9FUNG3.860e-2278.57Polyadenylate-binding protein n=1 Tax=Podila verti... [more]
A0A197KFZ8_9FUNG5.240e-2276.79Polyadenylate-binding protein n=2 Tax=Mortierellac... [more]
A0A0B7NMG9_9FUNG7.100e-2278.57Polyadenylate-binding protein n=9 Tax=Mucorineae T... [more]
A0A7S2V0G2_9STRA7.150e-2281.82Polyadenylate-binding protein n=2 Tax=Fibrocapsa j... [more]
A0A1X2HWX9_SYNRA7.160e-2278.57Polyadenylate-binding protein n=1 Tax=Syncephalast... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124807contigM-pyrifera_M_contig124807:93..305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score98.2
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog78898.MVEG_03549T0
Preferred namePAB1
KEGG koko:K13126
KEGG Pathwayko03013,ko03015,ko03018,map03013,map03015,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003727,GO:0003729,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005840,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008428,GO:0009889,GO:0009894,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015031,GO:0015833,GO:0015931,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031326,GO:0031329,GO:0031503,GO:0032268,GO:0032991,GO:0033036,GO:0034248,GO:0034613,GO:0035770,GO:0036464,GO:0042886,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051641,GO:0051649,GO:0060211,GO:0060255,GO:0061013,GO:0065007,GO:0065009,GO:0070717,GO:0070727,GO:0071014,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0098772,GO:1900151,GO:1901363,GO:1903311,GO:1990841,GO:1990904,GO:2000112
EggNOG free text desc.Binds the poly(A) tail of mRNA
EggNOG OGs1GRZN@112252,38F9F@33154,3NXFC@4751,KOG0123@1,KOG0123@2759
COG Functional cat.AJ
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03041
Exons1
Model size213
Cds size210
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.0261853-UTR-M-pyrifera_M_contig124807:92..951622815765.0261853-UTR-M-pyrifera_M_contig124807:92..95Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124807 93..95 +
1692277558.8515596-UTR-M-pyrifera_M_contig124807:92..951692277558.8515596-UTR-M-pyrifera_M_contig124807:92..95Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124807 93..95 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.03678-CDS-M-pyrifera_M_contig124807:95..3051622815765.03678-CDS-M-pyrifera_M_contig124807:95..305Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124807 96..305 +
1692277558.8623521-CDS-M-pyrifera_M_contig124807:95..3051692277558.8623521-CDS-M-pyrifera_M_contig124807:95..305Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124807 96..305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124807.5040.1prot_M-pyrifera_M_contig124807.5040.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124807 96..305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124807.5040.1

>prot_M-pyrifera_M_contig124807.5040.1 ID=prot_M-pyrifera_M_contig124807.5040.1|Name=mRNA_M-pyrifera_M_contig124807.5040.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MSASLYVGDLDPDVGESLLFDMFKQVGPVASIRVCRDTVTRRSLGYAYVN
YHNITDGRLRPPHIPLGSL*
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mRNA from alignment at M-pyrifera_M_contig124807:93..305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124807.5040.1 ID=mRNA_M-pyrifera_M_contig124807.5040.1|Name=mRNA_M-pyrifera_M_contig124807.5040.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig124807:93..305+ (Macrocystis pyrifera P11B4 male)
CCCATGTCCGCCTCCCTCTACGTGGGAGACTTGGACCCGGACGTAGGCGA
GAGCCTGCTGTTCGACATGTTCAAGCAGGTGGGCCCTGTGGCCTCGATTC
GCGTCTGCCGCGACACCGTCACCCGCCGCTCGCTGGGCTACGCCTACGTC
AACTACCACAACATCACTGATGGTAGGCTGCGCCCTCCCCACATTCCTCT
TGGCTCTCTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124807:93..305+

>mRNA_M-pyrifera_M_contig124807.5040.1 ID=mRNA_M-pyrifera_M_contig124807.5040.1|Name=mRNA_M-pyrifera_M_contig124807.5040.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig124807:93..305+ (Macrocystis pyrifera P11B4 male)
ATGTCCGCCTCCCTCTACGTGGGAGACTTGGACCCGGACGTAGGCGAGAG
CCTGCTGTTCGACATGTTCAAGCAGGTGGGCCCTGTGGCCTCGATTCGCG
TCTGCCGCGACACCGTCACCCGCCGCTCGCTGGGCTACGCCTACGTCAAC
TACCACAACATCACTGATGGTAGGCTGCGCCCTCCCCACATTCCTCTTGG
CTCTCTGTAAATGTCCGCCTCCCTCTACGTGGGAGACTTGGACCCGGACG
TAGGCGAGAGCCTGCTGTTCGACATGTTCAAGCAGGTGGGCCCTGTGGCC
TCGATTCGCGTCTGCCGCGACACCGTCACCCGCCGCTCGCTGGGCTACGC
CTACGTCAACTACCACAACATCACTGATGGTAGGCTGCGCCCTCCCCACA
TTCCTCTTGGCTCTCTGTAA
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