mRNA_M-pyrifera_M_contig12477.5032.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12477.5032.1 vs. uniprot
Match: D7G7B6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7B6_ECTSI) HSP 1 Score: 102 bits (255), Expect = 6.280e-26 Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 1
Query: 58 MLLVLGGNATPSKEDVTTALAAVGVDADEARLDQLIADMAGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMF-----GGGD 375
MLLVLGGNA+P+KEDVTTALAAVG++ DEARLDQLIADMAGKDI ALIEAGKGKLASFG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+DMGGGMDMF GGGD
Sbjct: 1 MLLVLGGNASPTKEDVTTALAAVGIECDEARLDQLIADMAGKDIAALIEAGKGKLASFG--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXXEGGGD 109
BLAST of mRNA_M-pyrifera_M_contig12477.5032.1 vs. uniprot
Match: A0A835ZFT3_9STRA (60s acidic ribosomal protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT3_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.060e-25 Identity = 93/115 (80.87%), Postives = 105/115 (91.30%), Query Frame = 1
Query: 37 MRHMATYMLLVLGGNATPSKEDVTTALAAVGVDADEARLDQLIADMAGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGDDG 381
MRH+A YM+LVLGGNA+PS EDVT AL++VG++ADEARL QLIA+M GKD+N ++EAGK KLAS G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGG+ G
Sbjct: 1 MRHLAVYMMLVLGGNASPSAEDVTKALSSVGIEADEARLSQLIAEMEGKDLNEVMEAGKKKLASLG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGEGG 114
BLAST of mRNA_M-pyrifera_M_contig12477.5032.1 vs. uniprot
Match: A0A4D9D2N6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2N6_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.730e-19 Identity = 85/115 (73.91%), Postives = 95/115 (82.61%), Query Frame = 1
Query: 37 MRHMATYMLLVLGGNATPSKEDVTTALAAVGVDADEARLDQLIADMAGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VDMGGGMDMFGGGD 375
MRH+ATY+LL LGGN PS DVTTAL++VGV+ADE RL L+ D+ GKD+ LIE G LA+FGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+GG MDMFGGGD
Sbjct: 1 MRHLATYLLLKLGGNENPSASDVTTALSSVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADLGGAMDMFGGGD 115
BLAST of mRNA_M-pyrifera_M_contig12477.5032.1 vs. uniprot
Match: A0A7S1BJ38_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BJ38_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 9.080e-19 Identity = 81/111 (72.97%), Postives = 92/111 (82.88%), Query Frame = 1
Query: 37 MRHMATYMLLVLGGNATPSKEDVTTALAAVGVDADEARLDQLIADMAGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGG 369
M+H+A Y+L VLGGN +PS DVTTAL+AVGV+AD RL L+ D+ GKD+N L+ +GKG LA FG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DMGGGMDMFGG
Sbjct: 1 MKHLAAYLLCVLGGNESPSVSDVTTALSAVGVEADSERLATLVKDLEGKDLNELLTSGKGLLAKFG---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADMGGGMDMFGG 108
BLAST of mRNA_M-pyrifera_M_contig12477.5032.1 vs. uniprot
Match: A0A7S2RFX2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RFX2_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 9.580e-19 Identity = 78/111 (70.27%), Postives = 95/111 (85.59%), Query Frame = 1
Query: 37 MRHMATYMLLVLGGNATPSKEDVTTALAAVGVDADEARLDQLIADMAGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGG 369
M+H+A Y+LLVLGGNA+PS +DVT +LA+VGV+ D+ LD+LI+++ GKD+N ++E+GK LA FG XXXXXXXXXXXXXXXXXXXXXXXXXXXXX DMGGGMDMFGG
Sbjct: 1 MKHVAAYLLLVLGGNASPSADDVTKSLASVGVEVDKESLDKLISELDGKDVNEIMESGKDMLAKFG----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXADMGGGMDMFGG 107
BLAST of mRNA_M-pyrifera_M_contig12477.5032.1 vs. uniprot
Match: A0A448ZRL0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRL0_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.770e-18 Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 1
Query: 37 MRHMATYMLLVLGGNATPSKEDVTTALAAVGVDADEARLDQLIADMAGKDINALIEAGKGKLASFG 234
M+ +ATY++L +GGNA+PSKEDVT AL+AVGV+AD A LD+L AD+ GK+I LIEAGK +LA FG
Sbjct: 1 MKELATYLMLQIGGNASPSKEDVTGALSAVGVEADSASLDKLFADIEGKEIAELIEAGKDQLAKFG 66
BLAST of mRNA_M-pyrifera_M_contig12477.5032.1 vs. uniprot
Match: A0A7S0C3X8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3X8_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.090e-17 Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 1
Query: 37 MRHMATYMLLVLGGNATPSKEDVTTALAAVGVDADEARLDQLIADMAGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGG 369
M+HMA Y+LLVLGGNA+PS +DV AL VGV+ ++ RL+ LI+++ GKD++ LI G GKLA GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +DMGGGMDMFGG
Sbjct: 1 MKHMAAYLLLVLGGNASPSADDVKKALGVVGVEVEDERLNALISELEGKDLSELIATGTGKLAQLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--MDMGGGMDMFGG 109
BLAST of mRNA_M-pyrifera_M_contig12477.5032.1 vs. uniprot
Match: B7GA61_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GA61_PHATC) HSP 1 Score: 81.6 bits (200), Expect = 1.500e-17 Identity = 75/110 (68.18%), Postives = 95/110 (86.36%), Query Frame = 1
Query: 37 MRHMATYMLLVLGGNATPSKEDVTTALAAVGVDADEARLDQLIADMAGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFG 366
M+H+A Y+LL LGGNA+P+K+D+T AL+AVGV+ D A LD+++AD+ G+D+ AL+E+G LA+FG XXXXXXXXXXXXXXXXXXXXXXXXXXXXX+D+GGGMDMFG
Sbjct: 1 MKHLAAYLLLQLGGNASPTKDDITQALSAVGVEVDGADLDRMLADLEGQDLEALLESGNALLATFG----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDLGGGMDMFG 106
BLAST of mRNA_M-pyrifera_M_contig12477.5032.1 vs. uniprot
Match: A0A7S3Q302_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q302_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 2.020e-17 Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 1
Query: 37 MRHMATYMLLVLGGNATPSKEDVTTALAAVGVDADEARLDQLIADMAGKDINALIEAGKGKLASFG 234
M+H+A Y+LLVLGGN +PS DVTTALAAVGV+AD A LD+ +A+M GKDI+ + AGK LA FG
Sbjct: 1 MKHVAAYLLLVLGGNESPSAADVTTALAAVGVEADSASLDKFLAEMEGKDIDETLAAGKELLAKFG 66
BLAST of mRNA_M-pyrifera_M_contig12477.5032.1 vs. uniprot
Match: A0A2D4BM79_PYTIN (Ribosomal protein putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BM79_PYTIN) HSP 1 Score: 80.5 bits (197), Expect = 2.070e-17 Identity = 48/114 (42.11%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 37 MRHMATYMLLVLGGNATPSKEDVTTALAAVGVDADEARLDQLIADMAGKDINALIEAGKGKLASFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGDD 378
MR++A Y+L +LGGNA PS DVT L++VGV+ D RL+Q+I+++ GKD+N +I AG KLA FG D+GGGMDMFGGG D
Sbjct: 3 MRYIAAYLLAILGGNAAPSAADVTAILSSVGVEVDAERLNQVISELEGKDVNEIIAAGSKKLAKFG-----------------------------EEEEADLGGGMDMFGGGSD 87 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12477.5032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12477.5032.1 >prot_M-pyrifera_M_contig12477.5032.1 ID=prot_M-pyrifera_M_contig12477.5032.1|Name=mRNA_M-pyrifera_M_contig12477.5032.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp SSCFRPSLNRFKMRHMATYMLLVLGGNATPSKEDVTTALAAVGVDADEARback to top mRNA from alignment at M-pyrifera_M_contig12477:702..4219+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12477.5032.1 ID=mRNA_M-pyrifera_M_contig12477.5032.1|Name=mRNA_M-pyrifera_M_contig12477.5032.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3518bp|location=Sequence derived from alignment at M-pyrifera_M_contig12477:702..4219+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12477:702..4219+ >mRNA_M-pyrifera_M_contig12477.5032.1 ID=mRNA_M-pyrifera_M_contig12477.5032.1|Name=mRNA_M-pyrifera_M_contig12477.5032.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig12477:702..4219+ (Macrocystis pyrifera P11B4 male)back to top |